Oncorhynchus masou masou (cherry salmon): 135557937
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Entry
135557937 CDS
T10723
Name
(RefSeq) thrombospondin-1-like isoform X1
KO
K16857
thrombospondin 1
Organism
omm Oncorhynchus masou masou (cherry salmon)
Pathway
omm04115
p53 signaling pathway
omm04145
Phagosome
omm04148
Efferocytosis
omm04350
TGF-beta signaling pathway
omm04510
Focal adhesion
omm04512
ECM-receptor interaction
omm04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
omm00001
]
09130 Environmental Information Processing
09132 Signal transduction
04350 TGF-beta signaling pathway
135557937
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
135557937
09140 Cellular Processes
09141 Transport and catabolism
04145 Phagosome
135557937
04148 Efferocytosis
135557937
09143 Cell growth and death
04115 p53 signaling pathway
135557937
09144 Cellular community - eukaryotes
04510 Focal adhesion
135557937
09142 Cell motility
04820 Cytoskeleton in muscle cells
135557937
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
omm04131
]
135557937
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
omm00536
]
135557937
Membrane trafficking [BR:
omm04131
]
Endocytosis
Phagocytosis
Opsonins
135557937
Glycosaminoglycan binding proteins [BR:
omm00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
135557937
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TSP_C
TSP_3
TSP_1
TSP1_spondin
VWC
VWC2L_2nd
TSP1_ADAMTS
EGF_3
TSP1_CFP_C
Laminin_G_3
EGF
cEGF
TSP1_CCN
Laminin_G_2
Motif
Other DBs
NCBI-GeneID:
135557937
NCBI-ProteinID:
XP_064847731
LinkDB
All DBs
Position
16:39588691..39605375
Genome browser
AA seq
1174 aa
AA seq
DB search
MKLTGIFLLLMLWTCESVRVAENRDDNSVYDLFELVQVSKKNHGVTLVKGDDPYSPAYKI
LNPDLIPELPESSFRDLIDSIHAERGFLLLLNFKQFKRTRGSLLTVEKRDGSGAVFEIVS
NGKANTLDVVFSTVNKQQVVSIEDVDLATGHWKNITLFVQEDRAQLYVGCEEVNTAELDA
PIQSILTQETPATARLRIGKGAVKDRFMGVLQNVRFVFGTTLDAILRNKGCQNSVLTDEI
VLIDDPINGSSPAIRTDYTGHKTKDLQMICGFSCEDLAGMFKELKGLGVVVKELSNELRK
VTDENKFLMNRVGIHSGVCLHNGIVHKNKAEWTVDDCTECTCQNSATVCRKISCPLIPCA
NATVPDGECCPRCGTLSDYAEDGWSLWSEWTHCSVSCGRGIQQRGRSCDRINNNCEGTSV
QTRDCYLQECDKRFKQDGAWSHWSPWSSCSVTCGAGVITRIRLCNSPTPQLGGKDCQGEG
RQTEKCTKSPCPINGNWGPWSLWDTCSATCGGGAQTRKRLCNDPAPKYGGKECQGASKAT
QQCNKNACPVDGCLSNPCFPGTKCTSFPDGTWSCGKCPTGYSGDGIKCEDIDECKEVPDA
CFVFNGVHRCENTDPGYNCLPCPARYSGPQPFGRGVEEATAKKQVCTPRNPCLDGSHDCN
KNARCNYLGHFADPMYRCECKPGYAGNGHICGEDTDLDGWPNQDLVCVENATYHCKKDNC
PNLPNSGQEDYDKDGVGDACDNDDDNDGIADDRDNCPFVYNPRQYDYDRDDIGDRCDNCP
YNSNPDQTDTDNNGEGDACSVDIDGDGILNEKDNCPYVYNVDQRDTDLDGVGDMCDNCPL
EHNPDQVDSDDDRVGDKCDSNQDIDEDGHQNNLDNCPYIPNANQADHDKDGKGDACDHDD
DNDGIPDEKDNCRLAFNPDQIDSDGDGRGDACKDDFDQDNVPDIYDVCPENFDISETDFR
KFQMVPLDPKGTSQIDPNWVVRHQGKELVQTVNCDPGIAVGFDEFNSVDFSGTFFINTER
DDDYAGFVFGYQSSSRFYVVMWKQITQTYWNNKPTKAQGYSGLSIKVVNSTTGPGEHLRN
ALWHTGNTPGQVKTLWHDPKNIGWKDFTAYRWHLIHRPRTGHIRVVMYEGKKIMADSGSI
YDKTYAGGRLGLFVFSQEMVYFSDLKYECRGKEQ
NT seq
3525 nt
NT seq
+upstream
nt +downstream
nt
atgaagttgacaggaatatttctgctgttgatgctttggacctgcgagagcgtacgagtt
gcagagaaccgagacgacaatagcgtgtacgacctgttcgagctggtccaagtctccaag
aagaaccacggagtgaccctagtgaagggcgacgacccatacagtcccgcctacaagatc
ctcaacccggacctgatccccgagctccccgagagctccttcagggacctcatcgattcc
atccatgcggagaggggcttccttctcctcctcaacttcaagcagtttaagcggaccagg
ggctccctcttgaccgtggagaagcgggacggatcgggagccgtgttcgagattgtctcg
aatggaaaagcgaacaccctggatgtggttttctccaccgttaacaagcaacaggtggtg
tcgatagaagatgtggacctggcgacgggccactggaagaatattacgctgttcgtgcag
gaggaccgggcgcagctgtatgttggctgtgaggaggtgaacacggcggaactagacgct
cccatccagagcatcctcactcaggagactcccgccacagcgcgcctcaggatcgggaag
ggagcggtgaaggaccggttcatgggggtgctccagaacgtgcgctttgtctttggaacc
actttggacgcgattctgcgcaacaagggatgtcaaaactctgttctgactgatgagatc
gtccttatcgacgaccccatcaatgggtccagccctgccattaggacagactacactggc
cacaaaactaaagacctgcagatgatctgtgggttctcctgtgaggacctggctggcatg
ttcaaggaactgaaggggctgggagtggtggtgaaggagctgtccaatgagctgcgcaaa
gtgacggacgagaacaagtttttgatgaacagagttgggatccacagtggagtctgtctg
cacaacggcatcgtccacaagaacaaggctgagtggaccgtcgacgactgcactgagtgc
acttgtcaaaactctgccaccgtgtgccgtaagatctcctgccccctgatcccgtgtgcc
aacgcaaccgtgcccgatggagagtgctgcccgcgctgtggaacactgagtgactatgcg
gaggatggatggtccctgtggtctgaatggacccactgttccgtgtcttgtgggcgggga
attcagcagagaggccgctcctgcgaccgcatcaataacaattgcgagggaacctccgtc
caaaccagggactgctaccttcaggagtgtgacaaacgcttcaagcaggacggtgcctgg
agccactggtccccctggtcatcctgctcggtcacctgtggggcgggtgtcatcacccgg
atccgcctctgcaactcccccacaccccagctgggaggcaaggactgccaaggagaggga
cgacagactgagaagtgcaccaagtcaccctgcccaatcaacggtaactggggaccctgg
tcgctatgggatacctgctctgccacttgtgggggaggagctcagacacgtaaacgtctc
tgcaacgaccccgcccctaaatatggtggtaaggagtgccagggtgcctccaaggctact
cagcagtgcaacaagaacgcctgtcccgtcgatggctgtctgtccaacccttgctttcct
gggaccaagtgcaccagctttcccgatggaacatggagttgtgggaaatgtcccactggt
tactctggtgacggcatcaagtgcgaggacattgacgagtgcaaagaggttcctgacgct
tgcttcgtgttcaacggagtccaccgctgtgagaacactgaccctggttacaactgtctg
ccctgtcccgcacgctactctggacctcagcccttcggcaggggagtggaggaggccacc
gccaagaaacaggtgtgtacaccgcgtaacccctgcctggacgggagccacgactgcaac
aagaacgcccgctgtaactacctgggacactttgccgaccccatgtaccgctgtgagtgt
aagcctggctatgccggaaacggacacatctgtggtgaggacacggacctggacggatgg
cccaaccaagacctggtctgtgtggagaacgccacctaccactgcaagaaggacaactgc
cccaaccttcccaactcaggccaagaagactacgacaaggatggtgttggtgacgcttgt
gacaacgatgatgacaatgatggtattgctgacgacagggataactgtccgtttgtgtac
aaccccaggcaatatgactatgacagagatgatatcggagatcgttgtgataactgtcct
tacaacagcaaccctgaccagaccgacacagacaacaacggggaaggagacgcctgctct
gtggacattgatggagatggcatcctgaatgagaaagacaactgcccgtacgtctacaac
gtggaccagagagacactgacctggacggtgtgggagacatgtgtgacaactgtcctctg
gaacacaaccctgaccaggttgactctgatgatgaccgtgtgggagataagtgtgacagc
aaccaggacatcgatgaagatggccaccagaacaacctggacaactgcccctacatcccc
aacgctaaccaggccgaccacgacaaagacggaaagggagatgcctgcgaccacgatgat
gacaatgacgggatcccagacgagaaagataactgcagactggccttcaaccctgaccag
atcgactccgatggtgatggtcgaggagacgcttgcaaagatgactttgaccaagacaat
gtgcctgacatctacgacgtgtgtccggagaactttgacatcagcgagacggacttcagg
aagttccagatggttcccctggaccccaagggaacgtcccagatcgaccccaactgggtg
gtcagacatcagggcaaagagctggtccagaccgtcaactgtgaccctggcattgctgtt
ggttttgatgagttcaactctgtggacttcagtggaaccttcttcatcaacacagagaga
gatgatgactacgccggctttgtgttcggctaccagtccagctccaggttctacgtggtg
atgtggaagcagatcacacagacctactggaacaacaaacccaccaaggctcagggatac
tcaggactgtccatcaaggtggtcaactccactactggacctggggagcacctcaggaat
gctctctggcacactggtaacaccccaggacaggtgaagactctttggcacgaccctaag
aacattggctggaaagacttcacagcctacagatggcacctgatccacagaccaagaaca
ggacacatcagagtggtcatgtacgaggggaagaagatcatggctgattctgggagcata
tatgacaaaacgtacgcaggcggaagactaggcctctttgtcttctcgcaagagatggtc
tacttctcagacctcaagtatgaatgcagaggtaaggaacaatga
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