Orbus mooreae: RHO11_00390
Help
Entry
RHO11_00390 CDS
T10515
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
omo Orbus mooreae
Pathway
omo03030
DNA replication
omo03410
Base excision repair
omo03420
Nucleotide excision repair
omo03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
omo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
RHO11_00390 (ligA)
03410 Base excision repair
RHO11_00390 (ligA)
03420 Nucleotide excision repair
RHO11_00390 (ligA)
03430 Mismatch repair
RHO11_00390 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
omo03032
]
RHO11_00390 (ligA)
03400 DNA repair and recombination proteins [BR:
omo03400
]
RHO11_00390 (ligA)
Enzymes [BR:
omo01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
RHO11_00390 (ligA)
DNA replication proteins [BR:
omo03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
RHO11_00390 (ligA)
DNA repair and recombination proteins [BR:
omo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
RHO11_00390 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
RHO11_00390 (ligA)
MMR (mismatch excision repair)
DNA ligase
RHO11_00390 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
RHO11_00390 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
Nlig-Ia
PTCB-BRCT
5_3_exonuc
HHH
RNA_ligase
BRCT_2
RTT107_BRCT_5
Auto_anti-p27
DZR_2
Motif
Other DBs
NCBI-ProteinID:
WVD61620
LinkDB
All DBs
Position
93610..95661
Genome browser
AA seq
683 aa
AA seq
DB search
MNTKQDSMSINDQIEHLRQIIRQYEYQYYVMDDPTVPDAEYDRLMAQLRVLEQQNPSLIT
AESPTQRVGGVALSQFKTIKHEMPMLSLDNVFDEESFVAFDKRIRERSNVSTQDIEYCCE
LKLDGLAVSLLYQNGNFIQAATRGDGNVGEDITENVKTIRAIPLKLTGDNIPARLEVRGE
VFMTHQGFEKLNRDAEKRNEKPFANPRNAAAGSLRQLDPKVTAKRPLAFYCYGLGIFEGE
SLPDTHYERLMQFKKWGLPVSDKVKLNRGCSAVMEYFNNIEQLRMSLGFDIDGVVIKVNS
IELQQQLGFVARAPRWATAFKFPAQEQITQLKKVDFQVGRTGAITPVARLEPVQVAGVIV
SNATLHNSDEIERLGIREGDFVSIRRAGDVIPKVVSVILEQRPADTKEICFPTHCPVCGS
IIVRDEGEAISRCSGGLVCAAQRKEALKHFVSRRAFDINGLGDRIIEQLVDRDYIKNPVD
LYSLSLPKLCSLDKVGEKLATNLLNALQASKETTLGRFIYALGIPHVGEVTAENLANELG
SLEAIRASSVEQLQNVTEIGEVIALSIFNFFKEEHNNYVIDELISEKIGIHWQENQKPAV
VNDSFFKDKTIVLTGSLSTMSRDEAKDKLKQLGAKITGSVSKNTDLVIAGEAAGSKLTKA
QELNIEIIDEQTMQSYFAQAGIS
NT seq
2052 nt
NT seq
+upstream
nt +downstream
nt
atgaatacaaaacaagattcgatgagtatcaatgatcaaatagaacatctacgacaaatt
attagacaatatgaatatcagtactatgtcatggatgatccgacagttcctgatgctgaa
tatgatcgattgatggcacaacttcgagttctagagcagcaaaatccttcgctaattact
gctgaatcacccacccaacgtgtgggtggcgtggcattaagtcaatttaaaaccatcaaa
catgaaatgccgatgttatcattagataatgtttttgatgaagagagctttgtggcgttt
gataaacgtattcgtgaacgaagtaatgtatcgactcaggatattgagtattgttgcgaa
ttaaaacttgatggtttagcagtgagtctgttatatcaaaacggtaattttatacaagca
gcaacacgtggtgatggtaatgttggtgaggatattaccgaaaatgttaaaaccattcga
gcgataccgctcaagcttactggggataatattccggctcgtttagaagttcgaggtgag
gtttttatgactcatcagggctttgaaaaattaaacagagatgctgaaaaacgcaatgaa
aaaccgtttgcaaatccacgtaatgcagctgctggttcattaaggcaattagatcctaaa
gttaccgcgaaaagaccactggccttttactgttatggattaggtatatttgaaggtgaa
tccttacccgatacccattatgaacgtttaatgcagtttaaaaaatgggggcttcctgtt
agtgataaagtaaaacttaatcgtggctgtagtgcggttatggaatattttaataatatt
gagcaactcagaatgtcattaggctttgatattgatggggtagtaattaaagtcaattct
attgagttgcagcagcaattaggttttgtcgctagagcgcctcgctgggcaacggctttt
aaatttcccgcacaagaacaaattacccaacttaaaaaagttgattttcaagtcggtaga
acaggtgcgataaccccagtggcaagactcgagcctgtacaagtagcgggggtgattgtc
agtaatgcaacgctgcataatagtgatgaaattgaacgcttaggtattcgtgaaggtgat
tttgtatcaatacgtagagcaggggatgttatccctaaagtagtgtctgtgatattagaa
caacggcccgctgatactaaagagatttgttttccaacacattgtccagtttgtggttct
attattgttcgtgatgaaggtgaggctatttcacgatgttctggtggattagtgtgtgcc
gctcagcgtaaagaagcgttaaagcattttgtgtcccgtcgtgcttttgatattaatggt
cttggtgatcgtattattgaacagcttgttgaccgagattatataaaaaatcctgttgat
ctatattctttaagcttgcctaaattatgttcattggataaagtgggtgaaaaattagcg
actaatttacttaatgctctgcaagcaagcaaagagacaacattaggacgatttatttat
gcgttaggtattcctcacgttggggaggtcaccgcagaaaatttagctaatgaattagga
tcgttagaggctattcgggcaagttcagtagaacagttacaaaatgtcaccgaaattggt
gaagtgattgcgctaagcatctttaacttttttaaagaagagcataacaattatgttatt
gatgaactaattagcgaaaaaattggtattcactggcaagaaaatcaaaaaccagctgtt
gttaacgatagtttctttaaagacaagacgattgttttaaccgggtcattatcaacaatg
agccgagatgaagctaaagataaacttaaacaactgggtgctaaaattacgggtagtgta
tcaaaaaatactgatcttgttattgctggggaagctgctggttcaaagttaactaaagca
caagaactgaatatagaaatcattgatgaacaaaccatgcaaagctattttgctcaagct
ggtattagttaa
DBGET
integrated database retrieval system
