KEGG   Oncorhynchus mykiss (rainbow trout): 100301720
Entry
100301720         CDS       T07259                                 
Symbol
smndc1
Name
(RefSeq) survival motor neuron domain containing 1
  KO
K12839  survival of motor neuron-related-splicing factor 30
Organism
omy  Oncorhynchus mykiss (rainbow trout)
Pathway
omy03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:omy00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    100301720 (smndc1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:omy03041]
    100301720 (smndc1)
Spliceosome [BR:omy03041]
 Complex A
  U2 snRNP components
   U2 related factors
    100301720 (smndc1)
 Complex B
    100301720 (smndc1)
 Other splicing related proteins
  Proteins involved in snRNP biogenesis
   Other proteins involved in snRNP biogenesis
    100301720 (smndc1)
SSDB
Motif
Pfam: SMN_Tudor TUDOR DUF2067 PWWP T3SS_needle_F DUF2730
Other DBs
NCBI-GeneID: 100301720
NCBI-ProteinID: NP_001154021
Ensembl: ENSOMYG00000019347
UniProt: C1BEV6
LinkDB
Position
1:complement(74183813..74189681)
AA seq 236 aa
MSEDLLKQLGSYKAQLQQVEAALSTDPENEDLLKLQKDLSEVIDLTKDLLTSQPSEGTAS
ANSSDAAPLKHSWSVGDRCMTVWSQDGQVYEAEIEEIDGENGTAAITFFGYGNAEVVPLQ
NLKPAEEGKHSEEDGKPKSRKEQIADQREYKKKKAQKKVLRMKELEQEREDQKSKWQSFN
NKAYNKNKKGQVKRSIFASPESVNGKVGVGTCGIADKPMTTYHDTSKYNVRHLMPQ
NT seq 711 nt   +upstreamnt  +downstreamnt
atgtcagaagatttgttgaaacagttgggcagctacaaagcccagttacaacaagtggaa
gccgccttatcaaccgatcctgagaacgaagaccttctcaaattacagaaagacttatcg
gaagtcatagacttgacaaaagacctcctgacgtcgcagccctctgaaggtactgctagt
gccaacagctctgatgcagcccccttgaaacacagctggagcgttggggacaggtgtatg
actgtgtggagtcaggatggacaggtgtatgaggctgagattgaggagatagacggcgag
aacggcacggcggccattaccttcttcggctacgggaacgcagaggtggtgccactgcag
aacctcaaacctgccgaggagggcaagcattctgaggaggacgggaaacccaagtccagg
aaagagcagatagcagaccagagggagtacaagaagaagaaggcccagaagaaggtgctg
aggatgaaggagctggaacaggagcgagaagaccagaaatccaagtggcaaagtttcaac
aacaaggcctacaacaagaacaagaaaggacaggtgaagaggagtatatttgcatcgccg
gagagcgtaaacggaaaggtgggagtaggaacatgtggcatagcagacaaacccatgacc
acgtatcacgacacatccaaatataacgtcaggcatctcatgccacagtga

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