KEGG   Oncorhynchus mykiss (rainbow trout): 110485635
Entry
110485635         CDS       T07259                                 
Name
(RefSeq) low-density lipoprotein receptor
  KO
K12473  low-density lipoprotein receptor
Organism
omy  Oncorhynchus mykiss (rainbow trout)
Pathway
omy03272  Virion - Hepatitis viruses
omy04144  Endocytosis
Brite
KEGG Orthology (KO) [BR:omy00001]
 09120 Genetic Information Processing
  09125 Information processing in viruses
   03272 Virion - Hepatitis viruses
    110485635
 09140 Cellular Processes
  09141 Transport and catabolism
   04144 Endocytosis
    110485635
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04131 Membrane trafficking [BR:omy04131]
    110485635
Membrane trafficking [BR:omy04131]
 Endocytosis
  Clathrin-mediated endocytosis
   Low-density lipoprotein receptor (LDLR) family proteins
    110485635
SSDB
Motif
Pfam: Ldl_recept_a Ldl_recept_b FXa_inhibition cEGF EGF_CA SGL DUF5050 EGF_3 EGF hEGF Gemini_mov
Other DBs
NCBI-GeneID: 110485635
NCBI-ProteinID: XP_036805169
Ensembl: ENSOMYG00000010728
LinkDB
Position
17:20329640..20354129
AA seq 877 aa
MLPTRVGITGVTACCLVLLSHCFAPTDAAYTCGTSQFRCGNGKCITSRWVCDGGDDCGDG
TDELPAACEAKTCLPTEFSCGGPLNKCISGTWHCDGKADCDNGADEKSCAAKNCTDNEFR
CSNGQCIAVSFVCDKDNDCSDGSDETSCPTATCGPNAFQCNNTVCVPRLWACDGDADCAD
GSDEWPQNCGGRDTKPTTKPCGPHEFHCGSGECIHRSWSCDGGKDCQDNSDETNCSRPTC
QPDEFQCNDGSCIHGSRQCDRQFDCRDLSDEIDCKSVDACEGPNNFRCKSGECITVDKVC
NRQKDCRDMSDEPIRECGNNECLTNNGGCSHTCTDLKIGFNCSCPAGYSLGKDNRKCEDI
DECADPDTCTQICVNILGSYKCECEEGYELDPKTKTCKAATGTVPYLLFTNRHEVRKMTL
DRSEYVPLIPSLKNVVALDMDMPGHKIFWSDLYHRKIYSADMNLAGNSSHHNVVIDSQME
APECLAVDWIHGNIYWTDSVLQTISVATTDGTRRKTLISEGLEKPRSIVVDPANNFMYWT
DWGDEAKIEKSGLNGADRVALVTDNIKWPNGITLDMVNQRLYWVDSKMHTVSSIGVNGEG
RHTLIYNEDKLAHPLSLAVFEEKVFWTDMGDRAVMSANRLTGNDITVLAEDLMQPEDIIV
YHNLKQPIGKNWCTDKNFVNGGCEFLCLPAPQINQHSPKYTCACPDHMTLGLDMRKCVAA
PTTTAPSTTPKIAAPIPTRAPTKQPAGPTSTTTTTTTTTSSARRVQPQDPDRSATTHSPQ
ETAVTGQSGYVAMPKVAEASHHTVLYIVLPIMMMCLVLFGAVLLWRHWRLKNTNTIHFDN
PVYQKTTEDELHICRNHSQDGYTYPQRQMVSLEEDLA
NT seq 2634 nt   +upstreamnt  +downstreamnt
atgctaccgactcgtgtgggaatcaccggggtgacagcatgttgcctggtgttactttcc
cactgttttgctcctacagatgctgcgtatacatgtgggacaagtcagttcaggtgtggc
aacgggaaatgtatcaccagccggtgggtgtgtgacggaggtgatgactgtggtgacgga
actgacgagctgccagccgcctgcgaggctaagacctgcctgcccactgagttcagctgc
ggaggcccactgaacaagtgtatctccggaacgtggcactgtgatggcaaagctgactgt
gacaatggagctgatgagaagagctgtgccgcaaagaactgcaccgacaacgagttccgc
tgctccaacggtcagtgcatcgccgtctccttcgtgtgcgacaaggacaacgactgttcc
gatggttctgacgagacttcctgtcccaccgccacctgcggtcccaacgccttccagtgt
aacaacactgtgtgtgtcccgcgtctctgggcctgcgacggtgacgccgattgtgccgat
ggttcagacgagtggccccagaactgtggcgggagggacaccaaaccgacaacaaagccc
tgtgggccacatgaattccactgtgggagtggggagtgtatccacaggagttggagctgt
gatggaggcaaggactgtcaggataattcagatgaaaccaactgcagtcggcccacttgc
cagccagatgagtttcagtgtaatgatggctcctgtatccatggtagccgtcagtgtgac
cgccagtttgactgcagggatctgagtgatgagattgactgcaagagcgtggatgcgtgt
gagggcccgaataacttcaggtgtaagagtggggagtgcatcaccgtggacaaggtgtgc
aacaggcagaaagactgccgagacatgtccgacgaacctatcagggagtgtggcaacaac
gagtgtttgaccaataacggcggttgctctcacacctgtaccgacctgaagattggcttc
aattgctcctgtcctgctgggtacagtctggggaaggacaacaggaaatgtgaagacatt
gatgagtgtgctgacccagacacctgtacccagatctgtgtgaacatcctgggaagttac
aagtgtgagtgtgaggagggctatgaactggaccccaagaccaagacctgcaaggctgcc
acaggtactgtcccctacctgttgttcaccaaccgccacgaggtgaggaagatgactctg
gaccgtagcgagtacgtccctctcatccccagcctgaagaacgtggtggccctggacatg
gacatgcctggacacaagatcttctggtctgacctgtaccacaggaagatctacagcgcc
gacatgaacttggcagggaactcctcccaccacaacgtggtgattgacagccagatggag
gcgccggagtgcctggccgtcgactggattcacggtaacatctattggacggacagtgtg
ctccagaccatctccgtggcaaccacggacggaacacggcgaaagacactgatcagcgaa
ggactggagaaaccaagaagcatcgtggtggacccagccaataacttcatgtactggact
gactggggcgacgaggccaagatcgagaagagtgggctgaacggagccgaccgcgtcgcc
ttggtaacggacaacatcaagtggcctaacggcatcactcttgacatggttaaccagcgt
ctgtactgggtggactctaagatgcacaccgtctccagcatcggcgtaaacggagaagga
cgacacacactcatctacaacgaggacaagctggctcaccccctctctctcgccgtcttc
gaggagaaagtattctggaccgacatgggcgacagagcggtcatgagcgccaaccgcctg
acaggaaatgacatcactgtactggcggaggacctgatgcagccagaggacatcattgta
taccacaacctcaagcagcccatcggaaagaactggtgcacagacaaaaactttgtgaat
ggaggttgtgagttcctatgtctacctgctccccagatcaaccaacactcccccaaatac
acctgtgcctgtcctgatcacatgaccctcggcctggacatgaggaagtgtgtggcagct
ccaacaactaccgctccctccaccactcccaaaattgcagctcccatccctaccagggcc
ccaaccaaacagccagctggccccacttccaccacaactacaactaccacaactacctcc
tccgcccgccgggtccagcctcaggaccctgataggtccgcgaccactcacagtccacag
gaaactgcggtcacaggtcaaagtggctatgttgccatgcccaaagtagctgaggcatca
caccatactgtgctctacattgtcttacctatcatgatgatgtgcctggtgctgtttggt
gcagtgttactatggagacactggaggctgaagaacaccaacaccatccactttgacaac
cccgtgtaccagaagaccacagaggacgagttgcacatctgtagaaaccacagccaggac
ggatacacctacccacagagacagatggtgagcctggaagaagacctggcatga

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