Oncorhynchus mykiss (rainbow trout): 110489940
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Entry
110489940 CDS
T07259
Symbol
smchd1
Name
(RefSeq) structural maintenance of chromosomes flexible hinge domain-containing protein 1
KO
K23113
structural maintenance of chromosomes flexible hinge domain-containing protein 1
Organism
omy
Oncorhynchus mykiss (rainbow trout)
Brite
KEGG Orthology (KO) [BR:
omy00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
omy03036
]
110489940 (smchd1)
03400 DNA repair and recombination proteins [BR:
omy03400
]
110489940 (smchd1)
Chromosome and associated proteins [BR:
omy03036
]
Eukaryotic type
Heterochromatin formation proteins
Other heterochromatin formation proteins
110489940 (smchd1)
DNA repair and recombination proteins [BR:
omy03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Other NHEJ factors
110489940 (smchd1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SMCHD1_S5
HATPase_c_3
SMC_hinge
HATPase_c
DUF3300
Motif
Other DBs
NCBI-GeneID:
110489940
NCBI-ProteinID:
XP_036800127
Ensembl:
ENSOMYG00000022813
LinkDB
All DBs
Position
15:complement(28337647..28377476)
Genome browser
AA seq
2014 aa
AA seq
DB search
MAESEGVTTSAVANSNRTHISQSKNGVNGSDKPHKSVVIFDCRPERHDAMERVLDINGLD
FNDFLQVVSKEFAIPSNETFVLTTTDRKGIDFDRYENLQQGNTLHLLQTEDQILPVATKE
HIVFLPHYDTLVQSGMYEYYASEGQNSLPYAFAELIDNALSATSHNTGVRTIDIRLLFDE
SLGKHAVVIMDNGCGMTSKQLNNWAVYRLSKFSRESGMFSSDHAGYVRPDPVARSLNSDI
SYFGVGGKQAVFYIGQSTRMITKPAGSPDVHELIISKEEFERKERNKEDIYSGFIRNRKM
ADSSHVRDDEERFLHGLIAEEVGKDSFTAVVVTGIQPEHVTFLKQDFHLWTRELAHLYHY
YIHGLNGNDMKASYRNSDCVSNIDIQISLLEKFPKIPRMVNLREIDNDMQTLYINTSADT
FEFKACTDVDGIVEGILRYHPFLYDRETYPEDPYAIPATEEDDDSIVLNQARGKRPIFEC
FWNGRLIPYTTVSEFDWCAWPKKTGTVPAECYSRFSGVLFTNDRFQVSTNKLTFMDLELQ
LKNKETLFTRIVNGQEQRVKIHKEFHQWLKTCHEKWDKQVKFRGFKRTITRTDVTTKKMQ
SPWATFSSIEWDGRAYKAGQYVKSQKTQPIFFGSVIQFLLYGDHEGDVYATGGQVQVAME
PKALYDDIKTIPISKIDRVITNAAIKKSIDDELAKLPDKLKVTWPEGNPWTQNDVRPAGT
PLGPLHVEILNKKGESISRIPSAMQNTTRKALSIELKVVWHSPNGDVETNSHIAAHSAKW
AFWFRTMENLNKLGKYTLHLNTILNVNESNATVWAGNRLPNHTLDFSITEGSAERFVVGT
VNTLLHVGVPFHIPLELLDEYGHPARPPPNLKPLLECSALEVSYEGVTARGTILTIRGVR
ARGAVQHYQSKTHDLKVVLPGLKQDSQTLKISLLPGNPDSLKVKQEDPITVENGTSVSFD
VEVHDVAGNVTAHPKLIISCQLQGIPGSTSMVAVDCSNTGAGTLVLKPITFKNIAGDQTV
KATFDIPSQKSVAPVQRDLRVVPSTRVSRLEVYSQEDEDSLVDSMVLRDKEKIDWTAGDL
LENLHYRLYDERGRVVPLSEEMARRIKVNWAADVSVEELAQGKLPNVPVPTLVKEEHFYQ
VSYMEELVSVDTSFTIVPRPDEPKHMKATLSESTVRMGEVLSGKIFLQLTDQYGNKTQML
TATCVDSLAVDAEGLDKASLVFTWQESTHSMLVTGVRFNPGFPGIRELNFTWRDFAEHVT
IKLTAGVPAQLKLVDGPQEPLQVLNEQGIQTPFLLQLFDEWGNPSPDQRVVVTLKTSTPA
LKVKSPVNSQPIDKDGKASFVVDHVSGPKGEYALEFRGSFNKKPIHGPAVKLTIIPDPNK
PVKLVVEYNTNSVFPAGGTLTVFSVSVVSEEGSTIKNLNPANMSMLLWKGEPSGTSRPPS
GAAQLKCSKPMEDEKANSFHFRDKVIPDHVGKYTIQFVLCVDKTKGLWSHQYVINVVPND
PVKLAPDLQPPTPVVVNNNVLDSRTLVEDMSLKLMDMYNNSAGLELSGKVVVTIKSSKGS
SDKNLPLFEGKVKSLQFSLANGEAQITNLFIMENSPGQDGNEYVLLFRPSVPGYGPKNPL
AAFELPFRFYNDVENRKQMSELTKKKDQLKQTVDIYRSLFDTNRQLITELSNQVRNATNK
ESHLKSELGKNGMAVAQLSSIPAIDKVISQKTADAEKMKLQTRRVCAMPDPFRGNLDVLG
KIGHLALVEDDDVATVISWHLLGDIDCVVTMTTAAARKIYDDTQGKQQVMPLDTVFWRKN
SSRPLPHIRNGQDSFRPIGNPVFARDLLIFPENAENCHIVFGNLLGDTILTDDLDSANHY
RKGVVQSKVPCPTLLTRQGDRIRSNGKFGGLQNKAPPIERLRGQVFGAPLPKDYHTFMGQ
IDLLQQYRLAMEKSRQVQEDFDSHMQYLKSPEMVQKEEEMDEQEKQLKDIETKLASTPVR
TPSAIGVKRSLDKAGESSGMVTKRTRRKLLKQDY
NT seq
6045 nt
NT seq
+upstream
nt +downstream
nt
atggcagagtcggaaggtgtgacaacgtctgctgttgccaatagcaatagaacacacatt
tcacagagtaaaaatggagttaacgggtcagataaaccacataaaagtgtggtaatattc
gactgtcgtccggaaagacacgacgcaatggagagagttctggacataaatggcttggac
ttcaacgacttccttcaagttgtatcgaaggaatttgccattccttccaacgaaacgttt
gtcttgacaacaacggacagaaaaggaatagattttgacagatatgagaatcttcaacaa
ggaaacactctccacctgttgcagaccgaggaccagatcctgcccgtggcaactaaggaa
cacattgtgtttctccctcactatgacacactggtccagagtggcatgtatgagtactac
gctagtgagggccagaattctttaccgtatgcctttgcagaactaatcgacaatgcactg
tcagctacatcgcacaacacaggagtgaggaccatagacatccgattgctgtttgatgag
tccttggggaaacatgcagtggttatcatggacaatggctgtggaatgacctccaaacag
cttaataactgggctgtgtacaggctctccaaattcagcagggaaagcggcatgttttca
agtgatcatgcagggtatgttcgccctgatccagtcgctcgcagtctcaacagtgatata
tcatattttggagtaggagggaaacaagcagtgttctacattggacagtcaaccaggatg
atcaccaaaccagcgggctccccagatgtccatgaactcatcatttcaaaagaagaattt
gagaggaaggagcggaacaaggaagatatttacagtggtttcatcagaaaccggaagatg
gctgactcgtcccacgtgagagacgacgaggagcgcttcctccatgggctgatcgctgag
gaggtgggaaaggacagcttcacggccgtggtggttacgggaatccagcctgaacatgtc
accttcctcaagcaggacttccacctgtggaccagagaactggcccacttgtatcactac
tacattcacggcctaaatgggaatgacatgaaagcctcctaccgaaactctgattgtgtt
tccaacattgacattcagatctctctgctggagaagttccccaagatccctcgcatggtg
aacctccgagagatcgacaacgacatgcagacgctctacatcaacacgtcggctgacaca
ttcgagttcaaggcctgcacagacgttgacggaatagtggaggggatcctgaggtaccac
cccttcctctatgacagggagacctaccccgaagacccctatgccataccagctacggaa
gaggatgatgacagtatcgtcctgaaccaggccagggggaagaggcccatatttgagtgt
ttttggaatggacgtctcatcccatacaccactgtatccgagtttgattggtgcgcatgg
ccaaagaagacagggacagtgcctgcagagtgttacagcaggttctcaggggtgctgttc
accaatgacaggttccaggtcagcaccaataagctcactttcatggacctggagctgcag
ctaaagaataaggagaccttattcacccgcattgtcaatggccaggaacaaagggttaaa
atccataaggagtttcaccagtggctgaagacctgccacgagaagtgggacaagcaagta
aagttcagaggcttcaagagaaccatcacacgaacagacgtgaccacaaagaagatgcaa
tctccttgggctaccttctcctccatcgagtgggacggtagagcgtacaaagctggtcaa
tacgtgaagtctcagaaaacacagcccatcttctttggctccgttattcagttcctactg
tatggcgatcacgagggagatgtctacgccacaggagggcaggtgcaggtggccatggaa
ccaaaggcgctgtacgatgacatcaagacaatacccatctccaaaatcgacagggtgatt
accaatgcagccatcaagaagagcattgatgacgaactagccaaactcccagacaagcta
aaagtgacctggccagagggcaacccctggacccagaacgatgttcggccagcaggcact
ccactaggacctctccatgtggaaattctcaacaagaaaggagagtcaatatccaggata
ccatcagccatgcaaaacacaacacggaaagcactttcgatcgaactaaaagttgtttgg
cattcacctaatggtgatgtggagaccaactctcacattgcagcacattcggccaagtgg
gcattctggttcagaaccatggagaacctgaacaagctggggaagtacactctgcacctg
aacacaatactcaatgtcaatgagagcaacgctaccgtctgggctgggaatcggcttccc
aaccacacactggacttctccattactgagggcagtgcagagaggtttgtggtgggcaca
gtgaacaccctgctccatgtgggggtgcctttccacatcccactggagctgctggatgaa
tacggtcaccctgctcgcccccctcccaacctcaagcccctcctggaatgcagtgccctg
gaagtgagttacgagggggtgaccgctagggggaccattttgaccatccgaggcgtcaga
gccaggggggcggtgcagcactaccagagcaagacgcacgacttgaaagtggtactgcct
ggcctcaaacaggactcgcagactctgaagatcagccttctccctggtaacccagattca
ctgaaagtgaaacaagaggatccaatcactgtggagaatggaacttcggttagctttgat
gtggaggtccatgacgtagcaggaaacgtcacagctcaccccaaactgatcatcagctgc
cagttgcaggggatccctggttcgacctccatggtggctgtagactgcagtaacacagga
gccgggaccctggtgctaaaaccaatcaccttcaaaaacattgcgggagaccagacggtt
aaagctacatttgatattcctagtcagaagagtgtagctccagtccagagggatctgagg
gttgtccccagcacccgtgtgtcacgtctcgaggtgtacagtcaggaggacgaggacagc
ctggtggactccatggtgcttagggacaaggaaaagatagactggactgcaggggacctc
ctggagaacctccattatagactgtatgacgagagaggcagggtggtccctctgtctgag
gagatggcccggaggatcaaggtgaactgggcggctgacgtgagtgtggaggagctggct
caggggaagctgcccaacgtgcctgtcccgacgctggtgaaggaggagcacttctaccag
gtctcctacatggaggagctggtgtctgtcgacacctccttcactatagtgccccgcccc
gacgagccgaaacacatgaaagccaccctgagcgagtcgaccgtgaggatgggagaggtc
ctatcaggaaagatcttcttacagcttacagaccagtatggtaataaaactcagatgctg
accgcgacctgtgtggactctctcgccgtggatgccgagggtcttgacaaagcatccctg
gtctttacctggcaggagagcacccactccatgttagtgacaggggtgcggttcaaccct
gggttcccaggcatcagagagctgaacttcacctggagggactttgcggagcatgtgaca
attaaattgacggctggggtccctgcacagctcaaactagtggacggaccacaagagccc
ctgcaggtactgaatgagcagggcatccagacgcccttcctcctccagctgtttgacgag
tgggggaacccctctcctgaccagagggttgtggtgacactgaagacttccactccagct
ctaaaggtgaagtcacccgttaattcacaaccgatagacaaagatggaaaagccagtttc
gtagtagaccatgtgagcggtccaaagggggagtatgcgctggagttcagagggtccttc
aacaagaagcccatccacggtccagccgtaaagcttaccattatccccgatcctaacaaa
cctgtcaaactggtggtggagtacaacacaaactcagtgtttcctgctggaggcaccctc
acagtgttttcagtgtctgtggtgtcggaggagggcagcaccatcaagaacctcaaccct
gccaacatgtccatgctgttgtggaagggagagccgtcagggacgtcaaggcccccctca
ggggctgcccaactgaaatgcagcaaacccatggaagatgaaaaggcgaacagttttcac
ttcagagacaaagtcatcccagaccatgtcgggaagtacaccatccagtttgtgctgtgt
gttgacaagactaaagggctgtggagtcaccagtatgtcataaatgttgtacccaacgac
cctgtcaaattggccccagacctgcagccaccaaccccagtggtggttaacaacaacgtc
cttgacagtcggactctggtggaggacatgtctctgaaattaatggatatgtataataac
tcagcggggctggagctgagtgggaaagtggtggtgactattaagagctccaaaggctcc
agtgacaaaaatctgcctctctttgagggcaaagtcaagagcctgcagtttagcctggct
aatggagaggcccaaatcactaatctgttcatcatggagaacagtcctggtcaggatggg
aatgagtacgtcttgctcttcagaccttcggtcccagggtatggccccaaaaatcccctg
gcagcgtttgagcttcccttccgcttctacaacgatgtggaaaacaggaagcagatgtct
gaattgaccaagaagaaggaccagctcaaacagaccgttgatatctacaggagtctgttt
gacaccaacaggcaactcatcactgagctcagtaatcaggtgcgcaacgccaccaacaag
gagagtcacttgaaatccgagctcgggaagaatggcatggctgtagcacaactgtcgtcc
atcccagcgatcgacaaagtcatcagtcagaagacggctgacgcggagaagatgaaactc
cagacgcggagagtctgcgccatgcccgatcccttcaggggcaaccttgacgtcctggga
aaaattggccacctggcgctggtggaggacgatgacgtggccacggtcatctcctggcac
ctcttgggggacattgactgtgtggtcaccatgacaacggcggcggcacggaagatctat
gacgacacccaggggaagcagcaggtcatgcccctggacacggtgttctggaggaagaac
agcagcagacccttgccccatataaggaacggtcaggacagctttcgtcccattgggaac
cctgtgtttgcccgagacctcctcattttcccagagaatgcagagaactgccacatagtg
ttcggcaacctccttggagacaccattttgacggatgacctggactctgctaaccactac
aggaagggggtggtccagagcaaggtgccatgccccaccctcctgactcggcagggcgat
aggatccgcagcaacggcaagtttgggggcttgcagaacaaagcccctccaatagagaga
ctgcgtggccaggtgttcggcgcacccctccccaaggactaccacacctttatgggccag
attgacctgctccagcagtaccggttggccatggaaaagagcagacaggtgcaggaggac
tttgacagccacatgcaatacctgaagtcacctgaaatggtgcagaaagaagaggagatg
gatgagcaggagaagcagctcaaagacatcgagacaaagcttgccagtactccagttcgg
acgccttccgccattggggtgaaacggagtcttgacaaggccggagaatcgtccggtatg
gtaaccaagaggacgaggcggaagttattaaaacaagactattga
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integrated database retrieval system
