KEGG   Oncorhynchus mykiss (rainbow trout): 110494409
Entry
110494409         CDS       T07259                                 
Name
(RefSeq) H-2 class II histocompatibility antigen, A-U alpha chain
  KO
K06752  MHC class II antigen
Organism
omy  Oncorhynchus mykiss (rainbow trout)
Pathway
omy04145  Phagosome
omy04514  Cell adhesion molecule (CAM) interaction
omy04672  Intestinal immune network for IgA production
omy05168  Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:omy00001]
 09130 Environmental Information Processing
  09133 Signaling molecules and interaction
   04514 Cell adhesion molecule (CAM) interaction
    110494409
 09140 Cellular Processes
  09141 Transport and catabolism
   04145 Phagosome
    110494409
 09150 Organismal Systems
  09151 Immune system
   04672 Intestinal immune network for IgA production
    110494409
 09160 Human Diseases
  09172 Infectious disease: viral
   05168 Herpes simplex virus 1 infection
    110494409
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:omy04147]
    110494409
Exosome [BR:omy04147]
 Exosomal proteins
  Exosomal proteins of haemopoietic cells  (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
   110494409
  Exosomal proteins of epithelial cells
   110494409
  Exosomal proteins of breast milk
   110494409
SSDB
Motif
Pfam: MHC_II_alpha C1-set Ig_3 Ig_2 I-set ig
Other DBs
NCBI-GeneID: 110494409
NCBI-ProteinID: XP_036806345
Ensembl: ENSOMYG00000011927
LinkDB
Position
17:complement(65534437..65539713)
AA seq 242 aa
MSLCCLNMKTSMIVLILCCQVYAEDKVLHIDLAITGCSDSDGVNMYGLDGEEMWYADFNK
KEGVMPLPPFADPFTYPGAYEQAVANQGVCKANLAVAIKASKNPPEAIAPPHSSIYPRDD
VELGVENTLICHVSAFHPAPVRVRWTRNNQNVTEGVRLSTPYPNTDFTLNQFSSLTFTPE
EGDIYGCTVEHKALTEPLTRIWEPEVSQPSVGPAVFCGVGLTLGLLGVATGTFFLIKGNQ
CN
NT seq 729 nt   +upstreamnt  +downstreamnt
atgtctctctgttgtctgaacatgaagacctctatgattgtcctcatcctctgctgtcag
gtgtatgcagaagacaaagttctgcatattgatttagctattactggatgcagtgattca
gatggagtgaatatgtatggactggatggtgaagagatgtggtatgcagacttcaacaaa
aaggagggagtgatgccgctgcctccgtttgcagatccatttacctaccctggagcttat
gaacaggctgtagctaatcagggtgtatgcaaagcaaacctggccgtagctataaaagct
tccaagaacccaccagaggcaatagcccctcctcacagcagcatctaccccagggatgat
gtggaactgggggtggagaacaccctcatctgccacgtcagtgcgttccaccctgcacct
gtcagagtcaggtggaccaggaacaatcagaatgtgaccgagggagtgcgtctcagcacc
ccctaccccaacactgatttcaccctcaaccagttctccagtctgaccttcaccccagag
gagggagacatctatggctgtactgtggagcacaaggcccttactgagcccctgacacgg
atctgggaacctgaggtgagccagcccagtgtgggtcctgctgtgttctgtggagtgggt
ctgactctggggctgctgggagtggctaccggaacgttcttcctcatcaaagggaaccag
tgtaactga

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