Oncorhynchus mykiss (rainbow trout): 110506216
Help
Entry
110506216 CDS
T07259
Name
(RefSeq) TNF receptor-associated factor 6-like
KO
K03175
TNF receptor-associated factor 6 [EC:
2.3.2.27
]
Organism
omy
Oncorhynchus mykiss (rainbow trout)
Pathway
omy04010
MAPK signaling pathway
omy04120
Ubiquitin mediated proteolysis
omy04140
Autophagy - animal
omy04144
Endocytosis
omy04620
Toll-like receptor signaling pathway
omy04621
NOD-like receptor signaling pathway
omy04622
RIG-I-like receptor signaling pathway
omy05132
Salmonella infection
omy05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
omy00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
110506216
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
110506216
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
110506216
04140 Autophagy - animal
110506216
09150 Organismal Systems
09151 Immune system
04620 Toll-like receptor signaling pathway
110506216
04621 NOD-like receptor signaling pathway
110506216
04622 RIG-I-like receptor signaling pathway
110506216
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
110506216
09171 Infectious disease: bacterial
05132 Salmonella infection
110506216
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
omy04131
]
110506216
04121 Ubiquitin system [BR:
omy04121
]
110506216
Enzymes [BR:
omy01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
110506216
Membrane trafficking [BR:
omy04131
]
Endocytosis
Clathrin-mediated endocytosis
Ubiquitin E3 ligases
110506216
Ubiquitin system [BR:
omy04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRAF proteins
110506216
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRAF-mep_MATH
MATH_2
zf-TRAF
zf-C3HC4
zf-C3HC4_2
zf-RING_2
zf-RING_UBOX
zf-C3HC4_3
zf-C3HC4_4
zf-RING_5
Sina_ZnF
U-box
TRAF3_RING
DM
zf-TRAF_2
RING_XB3-XBAT31
zf-RING_11
zf-rbx1
Phage_GP20
Motif
Other DBs
NCBI-GeneID:
110506216
NCBI-ProteinID:
XP_036819610
LinkDB
All DBs
Position
26:50360511..50371743
Genome browser
AA seq
551 aa
AA seq
DB search
MSCFEIDKSSLENDEACCGGAAASQLSNCALAMLEKEGSDSALSPTESTPTSLQGGAPLQ
GYDVEFDPPLESKYECPICLMALRAAVQTPCGHRFCRSCIEKSIRDTGQRCPVDNEVLRE
DQLFPDNFAKREILSLTVRCTNVGCTDKMELRRLDGHVTKCEFATVPCPLCQDAVWKSQL
EMHQSQHCQRRPVSCPDCVESFVYEDSKIHESLCPFANVVCQYCGMELIRDQLESHYDTD
CPKAPIACTFSTFGCREMMQRNDLAQHMQEFTQMHMRCMAEYLHRHSLTGYTQPPSSEDR
GAAAAELGAHPGASSSGAPCQCCGELQTMRETTQQLEGRLVRQDHQLRELSIQAGLVAEL
RRKVTSLEENLKELEAKQCQGVYVWPLEGFSGYLRTQAAGQPVVVHSPGFYTGRPGYKLC
LRLHLQTPSAQRCSNYISLFVHTMQGEFDGQLSWPFQGTIRLAVLDQGPEGQHHVEVMET
KPDLQAFQRPTIQRNPKGFGYVTFLHLMELQQRGFVHDDTLLVRCEVTPRFDTALRREGA
AMQPRGPEASL
NT seq
1656 nt
NT seq
+upstream
nt +downstream
nt
atgtcctgctttgagattgataagagcagcctggagaatgatgaagcgtgttgcggtggg
gcggccgcgtcacagctgtccaactgtgcgctggccatgctggagaaagagggcagcgac
tctgcgctgagccccacggagagtacccccaccagcctacagggcggcgccccactgcaa
ggctacgacgtggagttcgaccctccgctggagagcaagtacgagtgccccatctgcctc
atggccctgagggcagccgtgcagacgccgtgcggccatcgcttctgccgtagctgcatc
gagaagtccatccgtgatacagggcagaggtgtccagtggataacgaggtactacgggaa
gaccagctgttcccagataactttgccaagcgggagatcctctccctaacggtgcgctgc
accaacgtaggctgcactgacaaaatggagcttcgccgcctggatggccatgttacgaaa
tgtgagtttgccaccgtgccttgtccgctgtgccaggacgcggtgtggaagagccagctg
gagatgcaccaaagccaacactgccagcggagacctgtgtcctgtcccgactgtgtagag
agctttgtttacgaggacagcaagattcatgagtcgctgtgtccctttgccaacgtggtg
tgtcagtactgcggtatggagctcatcagagaccagttggaatctcactatgacacagac
tgtccgaaggctccgattgcctgtaccttcagcacttttggatgtcgagagatgatgcag
cgcaatgacctggcgcagcacatgcaggagttcactcagatgcacatgcgctgcatggct
gagtacctgcacaggcacagccttaccgggtacacccagccaccttcttctgaggaccga
ggggctgccgccgcagagctgggggcacacccaggagctagcagcagtggcgccccctgc
cagtgctgcggggaactgcagaccatgcgggagaccacccagcagctggagggccgtcta
gtgcggcaggaccaccagctacgtgagctgagcattcaggcggggctggtggcggagctc
cgtcgtaaggtcacctcgctggaggagaacctaaaggagctggaggccaagcagtgccag
ggtgtgtacgtgtggcccttggagggcttctcgggctacctacgtacccaggctgccgga
cagcctgttgtggtgcacagccctggcttctacacgggccggccgggctacaagctgtgt
ctgcgcctccacctccaaacgccctcggcacagcgctgctccaactacatctcactgttt
gttcacaccatgcagggggaatttgatgggcagctgtcgtggcccttccaaggcaccatc
cggctggccgtgctggaccaggggcctgagggccagcaccatgtggaggtgatggagacc
aagcccgacctgcaggccttccagaggcccaccatccagaggaaccccaagggctttggc
tacgtcacctttctgcacttgatggagctacagcagcgggggtttgtgcacgacgacacg
ctgctggtgcgctgcgaggtgacgccgcgcttcgacaccgccctgaggcgcgagggggcg
gccatgcagcccagagggcccgaggcctcgctgtga
DBGET
integrated database retrieval system
