Oncorhynchus mykiss (rainbow trout): 110506983 Help Entry 110506983         CDS       T07259                                  Name (RefSeq) TNF receptor-associated factor 6   KO K03175   TNF receptor-associated factor 6 [EC:2.3.2.27] Organism omy  Oncorhynchus mykiss (rainbow trout) Pathway omy04010   MAPK signaling pathway omy04120   Ubiquitin mediated proteolysis omy04140   Autophagy - animal omy04144   Endocytosis omy04517   IgSF CAM signaling omy04620   Toll-like receptor signaling pathway omy04621   NOD-like receptor signaling pathway omy04622   RIG-I-like receptor signaling pathway omy05132   Salmonella infection omy05168   Herpes simplex virus 1 infection Brite KEGG Orthology (KO) [BR:omy00001]  09120 Genetic Information Processing   09123 Folding, sorting and degradation    04120 Ubiquitin mediated proteolysis     110506983  09130 Environmental Information Processing   09132 Signal transduction    04010 MAPK signaling pathway     110506983   09133 Signaling molecules and interaction    04517 IgSF CAM signaling     110506983  09140 Cellular Processes   09141 Transport and catabolism    04144 Endocytosis     110506983    04140 Autophagy - animal     110506983  09150 Organismal Systems   09151 Immune system    04620 Toll-like receptor signaling pathway     110506983    04621 NOD-like receptor signaling pathway     110506983    04622 RIG-I-like receptor signaling pathway     110506983  09160 Human Diseases   09172 Infectious disease: viral    05168 Herpes simplex virus 1 infection     110506983   09171 Infectious disease: bacterial    05132 Salmonella infection     110506983  09180 Brite Hierarchies   09182 Protein families: genetic information processing    04131 Membrane trafficking [BR:omy04131]     110506983    04121 Ubiquitin system [BR:omy04121]     110506983 Enzymes [BR:omy01000]  2. Transferases   2.3  Acyltransferases    2.3.2  Aminoacyltransferases     2.3.2.27  RING-type E3 ubiquitin transferase      110506983 Membrane trafficking [BR:omy04131]  Endocytosis   Clathrin-mediated endocytosis    Ubiquitin E3 ligases     110506983 Ubiquitin system [BR:omy04121]  Ubiquitin ligases (E3)   Single Ring-finger type E3    TRAF proteins     110506983 BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  TRAF-mep_MATH MATH_2 zf-TRAF zf-C3HC4 zf-C3HC4_2 zf-RING_2 zf-RING_UBOX zf-C3HC4_3 zf-C3HC4_4 zf-RING_5 Sina_ZnF U-box TRAF3_RING DM zf-TRAF_2 RING_XB3-XBAT31 zf-RING_11 zf-rbx1 zf-C3HC4_IRF-2BP1_2 Motif Other DBs NCBI-GeneID:  110506983 NCBI-ProteinID:  XP_036837353 UniProt:  A0A8C7TS44 LinkDB All DBs Position 6:90345783..90353348 Genome browser AA seq 551 aa AA seqDB search MSCFEIDKSSLENDEACCGGAAASQLSNCALAMLEKEGSDSALSPTESTPTSLQGGAPLQ GYDVEFDPPLESKYECPICLMALRAAVQTPCGHRFCRSCIEKSIRDTGQRCPVDNEVLRE DQLFPDNFAKREILSLTVRCTNVGCTDKMELRRLDGHVTKCEFATVPCPLCQDAVWKSQL EMHQSQHCQRRPVSCPDCVESFVYEDSKIHESLCPFANVVCQYCGMELIRDQLESHYDTD CPKAPIACTFSTFGCREMMQRNDLAQHMQEFTQMHMRCMAEYLHRHSLTGYTQPPSSEDR GAAAAELGAHPGASSSGAPCQCCGELQTMRETTQQLEGRLVRQDHQLRELSIQAGLVAEL RRKVTSLEENLKELEAKQCQGVYVWPLEGFSGYLRTQAAGQPVVVHSPGFYTGRPGYKLC LRLHLQTPSAQRCSNYISLFVHTMQGEFDGQLSWPFQGTIRLAVLDQGPEGQHHVEVMET KPDLQAFQRPTIQRNPKGFGYVTFLHLMELQQRGFVHDDTLLVRCEVTPRFDTALRREGA AMQPRGPEASL NT seq 1656 nt NT seq  +upstreamnt  +downstreamnt atgtcctgctttgagattgataagagcagcctggagaatgatgaagcgtgttgcggtggg gcggccgcgtcacagctgtccaactgtgcgctggccatgctggagaaagagggcagcgac tctgcgctgagccccacggagagtacccccaccagcctacagggcggcgccccactgcaa ggctacgacgtggagttcgaccctccgctggagagcaagtacgagtgccccatctgcctc atggccctgagggcagccgtgcagacgccgtgcggccatcgcttctgccgcagctgcatc gagaagtccatccgtgatacagggcagaggtgtccagtggataacgaggtactacgggaa gaccagctgttcccagataactttgccaagcgagagatcctctccctaacggtgcgctgc accaacgtaggctgcactgacaaaatggagcttcgccgcctggatggccatgttacgaaa tgtgagtttgccaccgtgccttgtccgctgtgccaggacgcggtgtggaagagccagctg gagatgcaccaaagccaacactgccagcggagacctgtgtcctgtcccgactgtgtagag agctttgtttacgaggacagcaagattcatgagtcgctgtgtccctttgccaacgtggtg tgtcagtactgcggtatggagctcatcagagaccagttggaatctcactatgacaccgac tgtccgaaggctccgattgcctgtaccttcagcacttttggatgtcgagagatgatgcag cgcaatgacctggcgcagcacatgcaggagttcactcagatgcacatgcgctgcatggct gagtacctgcacaggcacagccttaccgggtacacccagccaccttcttctgaggaccga ggggctgccgccgcagagctgggggcacacccaggagctagcagcagtggcgccccctgc cagtgctgcggggaactgcagaccatgcgggagaccacccagcagctggagggccgtcta gtgcggcaggaccaccagctacgtgagctgagcattcaggcggggctggtggcggagctc cgtcgtaaggtcacctcgctggaggagaacctaaaggagctggaggccaagcagtgccag ggtgtgtacgtgtggcccttggagggcttctcgggctacctacgtacccaggctgccgga cagcctgttgtggtgcacagcccgggcttctacacgggccggccgggctacaagctgtgt ctgcgcctccacctccaaacgccctcggcacagcgctgctccaactacatctcactgttt gttcacaccatgcagggggaatttgatgggcagctgtcgtggcccttccaaggcaccatc cggctggccgtgctggaccaggggcctgagggccagcaccatgtggaggtgatggagacc aagcccgacctgcaggccttccagaggcccaccatccagaggaaccccaagggctttggc tacgtcacctttctgcacttgatggagctacagcagcgggggtttgtgcacgacgacacg ctgctggtgcgctgcgaggtgacgccgcgcttcgacaccgccctgaggcgcgagggggcg gccatgcagcccagagggcccgaggcctcgctgtga

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