Oncorhynchus mykiss (rainbow trout): 110508084
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Entry
110508084 CDS
T07259
Name
(RefSeq) T-lymphoma invasion and metastasis-inducing protein 1 isoform X1
KO
K05731
T-lymphoma invasion and metastasis-inducing protein 1
Organism
omy
Oncorhynchus mykiss (rainbow trout)
Pathway
omy04530
Tight junction
omy04810
Regulation of actin cytoskeleton
Brite
KEGG Orthology (KO) [BR:
omy00001
]
09140 Cellular Processes
09144 Cellular community - eukaryotes
04530 Tight junction
110508084
09142 Cell motility
04810 Regulation of actin cytoskeleton
110508084
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Ortholog
Paralog
GFIT
Motif
Pfam:
PH_Tiam1
RhoGEF
Tiam_CC_Ex
PH
RBD
PH_9
PDZ
SOS1_NGEF_PH
PDZ_6
PDZ_2
Motif
Other DBs
NCBI-GeneID:
110508084
NCBI-ProteinID:
XP_036821625
LinkDB
All DBs
Position
27:43873126..44069585
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AA seq
1678 aa
AA seq
DB search
MGNVESQNGDHAFYGTQHGYLSRKHMSRSLRISKHQSSSGSTRCTHDRNATQGKVEHRNS
ETSTRSSSTPSIPQSLADHALEPFNQTNVLSDFSPIWVDRMAMNLRPVSFHTHLDNPSVG
PQLDNPSVGPQLDPATPETRPQCPQDRGLGLYNNTGEGTYLQKTRDGPREPREPREGVSF
KKKRSKSADMWREHSLEFSLSDLSQEHLTSTEEIIDTEEADDRDFPDCEGLLGLVSPEGL
EGVDAAGRANSLDQLYGGQKTPTRRPVARYAKWHHDANREAREGEDDKMLSPSEEDGNSY
GAYTLPCRRSHCLSEGLTNHQAASCNTMQGRRAQTIQDVTAGEGSEYEDSGIDGVTASGA
EHQSRRYKTMSMSFSVCSAAGRSLFAGSDSGSSSGGGASEGVQGVYENFRQELEMSSCQT
ESLEEAGSALSDEQSVMSSAYQSDPLLSVAQGTVRKAGRLAVKNFLVHKKNKKVESATRR
KWKSYWVCLKGCTLFFYETDGRSGIDHNSAPKHAVWVENSIVQAVPEHPKKDFVFCLSNS
LGDAFLFQSCSQTELENWITAIHSACAAAVARQHHREDTVRLLRAEIKKLEQKIDMDEKM
KKMGDMQLSAVTDTKKRKTILDQIFLWEQNLEQFHMGLFRFRCYLASLQGGELPNPKRLL
AVASRPTKLAMGRLGIFSVSSFHALVAARTESGVRRRTQAMSRSSSSKRKSRFSSLWGLD
TTSKKKTHPTINQVFADGEEPVKKPLDGIYDVDTAGERGKSHEGTVKSLPQVNSDSHMTD
SDIWVPDHLTPSWVCLPNDQPVLAIIQPGESALDVLETICKAHRLDPAKHYLRLKFLVEN
QVQFYIPKPEEDVCDLLYKEIELGSKITKVIQFDRDESCMIGYGFSISVVEEDSVQQLYI
TDVKAGGLAFAKGLNAGDEILQLNGKDSCRLKFGDMKGAFSQASLSLTVNTLPSTDRRQI
CYLPPRRSDAQEVLHTDIFSMNQEEILDDGVGLTLESSGDSLDDDSESFSEADQCRKSTE
QVAAFCRSLHDMNPSECATSSSSPSLESPVPPPATGTATGTRQLSDADKLRKVICELVET
ERTYVKDLHCLIGRYLTPLQKETCLTQDELDILIGNLPEMVEFQVEFLKTLEDGTRLVPD
LEKLERVDQFKKILFSLGGSFLYYADRFKIYSAFCASHTKVPKVLVKAKTDADFKAFLEE
RNPKQQHSSTLESYLIKPIQRVLKYPLLLRELYSLTDPDSEEHYHLNVAMKAMNKVASHI
NEMQKIHEEFGLVFDQLIAEQSGDKKEVADLSMGDLLLHTSVAWINPPSSLGKWKKEPQL
AAFIFKTAVVFVCKDGSKQKKKMGGSHRASSVSSEDKDPFRFRHMISTDTLQVRALNNQE
GEASAVCEIVHVKSESEGRPERIFHLCCSSVDSKKDFLKTVHSILRDKQRRQLMKTESLP
PNQQYVPFGGKRLCALKGARPAMNRAVSDPARTLGRRKLVRNRFTIDTDIVFDGEPDQES
PLSPLSPEEPEGQGQKEGQGRGEVQAGDTDRWVEEQFDLERYEEEQQEAQVKGGGDVKET
DILSDDDDFCQSVGGPSTEPLSTTDLEGPVGALSMGEECKEVGPKHLQPQGGTGTTTPGM
RLSHPGKQCALVGCTDRLVNFELKPSNGSNTGIQGEESGLIQSTNDIETWRALPILVT
NT seq
5037 nt
NT seq
+upstream
nt +downstream
nt
atgggcaacgtggagagccagaacggcgaccatgccttctacggcacccaacatggctac
ctgtcccgcaaacacatgtctcgttccctccgcatctccaagcatcagtccagctccggt
tccacccgctgcacccacgaccgcaacgccactcagggcaaagtagaacaccgtaactct
gagacctccacgcgttccagcagcacccctagtatcccacagtccttagcggatcacgca
ctggagcccttcaaccagaccaatgtcctgtcagacttctcccctatttgggtggaccgt
atggccatgaacctccggcccgtctccttccatacccacctggacaacccatctgtaggg
ccccaactggacaacccatctgtagggccccagttagacccagcaacaccagagactaga
ccccagtgcccccaggacagaggtctaggcctgtacaataacactggggaggggacctac
ctccagaagaccagagacggaccccgggaaccccgggaaccccgggagggagtcagcttt
aagaagaagaggtccaaatcagccgacatgtggagagaacacagtctggagttcagtctg
tcagacctcagccaggaacacctcaccagcacagaggagatcatcgacaccgaggaggca
gacgacagggacttccctgattgtgaaggcctgctggggctcgtgtccccagagggtctg
gagggtgtggacgctgctggcagggccaactccctggatcagctgtatggcggtcagaag
accccaactcgccggcccgtggcacgctatgctaagtggcaccatgacgctaaccgcgaa
gcccgggagggagaggacgataagatgctgtctccgtcggaggaggatgggaactcgtac
ggagcgtacactctgccctgtcgacgctcacactgcctgtctgagggcctgaccaatcac
caggctgcctcctgtaacaccatgcagggccgcagagcacagaccatacaggatgtgaca
gccggagagggcagtgagtacgaggacagtggcatagacggggtgacggcttcgggggca
gagcatcagtcccggcgctataagaccatgtctatgtccttctctgtgtgctcggcggcg
gggcggagcctgtttgctggcagtgacagcggaagcagcagcgggggaggagccagtgag
ggggtccagggggtctatgagaacttcagacaggagttggagatgagctcgtgtcagaca
gagagtctggaggaggcggggtcagcactgagtgacgaacagagcgtcatgagctcagcc
taccaatcagatcccctgctcagcgttgcccagggaaccgtgaggaaggcgggccgtctg
gctgtcaagaacttcctggttcacaagaagaacaagaaggtggagtcggccaccaggagg
aagtggaagagctactgggtctgcctcaaaggatgcactctgttcttctacgagacagac
ggacggtcggggatcgaccacaacagtgctcctaaacatgcggtgtgggttgagaacagt
atcgtccaggccgtccctgaacaccccaagaaggactttgtcttctgcctcagcaactct
ctaggagatgcttttctcttccagtcctgcagccagacggagctggagaactggatcacg
gccatccactcggcgtgcgcggcggccgttgccaggcagcatcaccgggaggacacggtg
cgtctgttgagggcggagattaagaagctggagcagaagatcgacatggacgagaagatg
aagaagatgggagacatgcagctcagtgccgtgaccgataccaagaagaggaagaccata
ctggaccagatctttctgtgggagcagaacttggaacagttccacatgggtctgttccgg
ttccggtgttacctggccagtctgcagggaggggagctgcccaaccccaaacgcctgcta
gccgtagcctccagacccaccaaactggccatgggacgcctcggaatcttctctgtgtcg
tcctttcatgcgctggtggcagctcgtacagagagcggggtgaggagacgtacccaggcc
atgtctcgttcctcctcgtccaaacgtaagagcaggttctcctctctgtgggggctggac
actacttccaagaagaagactcaccccaccatcaaccaggtgtttgctgatggggaggag
ccagtgaaaaagcctctggacgggatctatgatgtggacactgccggggagagagggaag
agtcatgaggggacagtgaagagccttcctcaggtcaactcagacagtcacatgacagac
agtgatatctgggtgcctgaccacctgacaccgtcctgggtgtgtcttcctaacgaccag
cctgtcctcgccatcatccagcctggagagtctgctctggacgttctagagacaatctgc
aaggcccaccggctggatcctgccaaacattacctccgcctcaagttcctcgtcgaaaac
caagttcagttctacatccctaaaccggaggaggacgtgtgtgacttgctttataaagag
atagagctgggctccaaaataaccaaagtcatccagttcgacagggatgagtcctgtatg
attggttacgggttttccatctcagtggtggaggaggattcagtgcagcagctctacatt
accgatgtgaaggcgggaggattagccttcgctaaaggtctgaatgcgggggatgagatc
ttgcagctgaatgggaaagactcgtgcagattgaagttcggggacatgaagggggcgttt
tcccaggcctctctgtccctgaccgtcaacactctgccctccacggaccgacgacaaatc
tgttacctgcccccccgacgctctgacgcacaggaagtcctccacacagacatcttctct
atgaaccaggaggagattctggatgacggggttggtctgacgctggagagttctggagac
agcctggacgacgactccgagagcttcagcgaggcagaccaatgcagaaagagtacggag
caggttgcagcattctgccgcagtctccatgacatgaatccgtctgagtgtgccacaagt
tcctcctcccccagtctggagtcgcccgtgcctccgcccgccaccggcaccgccaccggc
acccgtcagctctccgacgccgacaagctacgcaaagtcatctgtgagctggtggagacc
gaacgcacctatgttaaagatcttcattgtctcatcgggaggtatttaaccccactacag
aaggagacctgcctcactcaggatgagctggacattctgattgggaacctgcctgagatg
gtggagttccaggtggaattcctgaagactctagaagacgggaccagattggtcccagac
ctggagaagctggagagagtagaccagttcaagaaaatcctcttctctctaggaggttct
ttcctgtactatgcagatcggtttaagatctacagtgcgttctgcgccagccacaccaaa
gtccccaaggtgctcgtgaaagctaagaccgatgcagacttcaaggcgtttctggaagag
aggaacccgaaacagcaacactcctcaaccctggagtcctacctgatcaaacccatccag
agagttctgaagtacccactactactgagagagctgtactcactgacggaccctgacagt
gaagaacactatcacctgaatgtcgctatgaaggccatgaacaaggtggccagtcacatc
aatgagatgcagaagatccacgaggagtttgggttggtgtttgaccagctcatagcggag
cagagtggagacaagaaagaggttgctgatctgtcgatgggtgacttgctgctccacacc
agcgtagcctggatcaaccctccctcctccctgggcaaatggaagaaagaaccccaactg
gctgcattcatcttcaaaacagccgtggtgtttgtgtgcaaggatggctccaagcagaag
aagaaaatgggtggctcccatcgagcgtcgtctgtctcgtctgaagacaaggacccattc
cgcttccgtcacatgatctccacagacacgctccaagtccgagccctcaataaccaagaa
ggggaggcctctgccgtatgtgagatcgtccacgtcaagtccgagtcagaaggacggccg
gagaggatattccacctgtgctgcagttctgtggacagtaagaaggacttcttgaagaca
gtccactccatcctgagagataaacaacgacgtcagctgatgaagacagagtctctaccc
cccaaccagcagtatgtccccttcggaggcaaacgcctctgtgccctgaagggagccaga
cctgccatgaacagagcagtgtcagacccggcgaggaccctgggtcggaggaaactggtg
aggaaccgtttcaccatcgacacagacatcgtcttcgacggcgagccggaccaggagtcc
cctctgtctccactgtcccctgaagagcctgagggacagggacaaaaggaaggacagggc
cggggggaggtgcaggcaggggatacggaccgctgggtggaggagcagtttgacctggag
cgctatgaggaggagcagcaggaggcgcaggtgaaaggaggaggagacgttaaagagaca
gacatccttagtgacgatgacgatttctgccagtctgttggaggaccctccactgaacct
ctatccaccacagacctagaagggcccgtaggggccctgtccatgggagaagaatgcaaa
gaggtgggccctaaacacctccagccccagggaggcacggggaccactaccccagggatg
aggctctcccacccggggaagcagtgtgctctggttgggtgtacagatagactggtgaac
ttcgaactgaagccctccaatgggagcaatactggaatacaaggagaggagagcggtctt
atccaatcaaccaatgatatagagacatggagggctcttccaatcctggtgacgtag
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