Oncorhynchus mykiss (rainbow trout): 110514337
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Entry
110514337 CDS
T07259
Symbol
ddx58
Name
(RefSeq) probable ATP-dependent RNA helicase DDX58
KO
K12646
ATP-dependent RNA helicase DDX58 [EC:
5.6.2.6
]
Organism
omy
Oncorhynchus mykiss (rainbow trout)
Pathway
omy04622
RIG-I-like receptor signaling pathway
omy04623
Cytosolic DNA-sensing pathway
omy05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
omy00001
]
09150 Organismal Systems
09151 Immune system
04622 RIG-I-like receptor signaling pathway
110514337 (ddx58)
04623 Cytosolic DNA-sensing pathway
110514337 (ddx58)
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
110514337 (ddx58)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04054 Pattern recognition receptors [BR:
omy04054
]
110514337 (ddx58)
Enzymes [BR:
omy01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
110514337 (ddx58)
Pattern recognition receptors [BR:
omy04054
]
Cytoplasmic pattern recognition receptors
RIG-I-like receptors
110514337 (ddx58)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RIG-I_C
CARD_2
RIG-I_C-RD
DEAD
ResIII
Helicase_C
AAA_22
PhoH
FcoT
IstB_IS21
SNF2-rel_dom
ABC_tran
AAA_19
ATP-synt_ab
Motif
Other DBs
NCBI-GeneID:
110514337
NCBI-ProteinID:
XP_036829300
LinkDB
All DBs
Position
Unknown
AA seq
976 aa
AA seq
DB search
MYELEKSNLQRCSEYVVHILRPSYVKGFMTTYLRPEVAERILSEESKSVTAAAQVFLDQV
CLLDELGWYQALLDALEAEDYKGLCEALKGWDFQTLESTKLHRVLLDRIEPRFTKMIKPR
DLLLHLGDCLRKRECEEIQAIENLKGPIAAAERLTDCLKRSDKQNWFKLLKSALYSCELT
DALQLLEPDTESSMSKMEVGDEDEGDTVMTVSFQYTEQSDDDDGMLMSGNPLTPSETPPT
SATGANSGVGEVQKGGEKRLREEEERGGGGGGEKSRGGEKKMREYQRELAEPVFQGKNTV
ICAPTGCGKTVVALAICEQHLKVKGKGAKVVFMATKVDVFNQQYKLFQEHFQEKDPDIRI
DGLCGNQGDQLSMKVVMENNDIIVLTPQILVNAMAQGEVPSLSCFSLLILDECHNTTGKH
PYNIIMTSYLDAKLSTEQNGQHLPQIVGLTASVGIGSFKNQSEAENNICQLCASLDSRII
STIHTNTDELQSYVHTPDKEFFLVQKRHTDPFIRIIHDIMAKIEGLAKTVYNIESLSSIE
NRDYGSQKYEQWIVDVQKKCRVLQLKDQEEESRVCRALYNYTEHLRKYNDALIINEDART
KDALEYLSSFIQQVKNAGHDATERQLTAYFDGQQGVLRGLSSGGQKENPKLDMLQYILEE
QYRQNDETKSVLFVRTRALADALKSWMEESDSLKFLKPGVLIGRGRKSSQLTGSGMTLNS
KKGVLDSFKSFDNQSKILIATSVADEGIDIPQCNLVLMYEYVGNVVKMVQVRGRGRAQGS
KCILVSDKKDRIDKEKHNMEKEKIVERAIRNLQDTPTEMLRKMEVFQRGDKVCRDMVKMV
PERPRTEGSYQLLCSKCKKHSCYTDDIRVLQDSHHIVLDPTLFSRARTEPHPKPKGFMGL
VKTRKLFCHCGLDWGIVASYLTIQNLPVLKIESFVVKNCVTEQQRYYRKWRDVTFSMKTF
ELTDIADSWNPLLEDQ
NT seq
2931 nt
NT seq
+upstream
nt +downstream
nt
atgtatgagttggagaagagcaatctacagaggtgtagtgaatacgtggttcatattttg
cgaccgtcttacgtcaaaggcttcatgacaacttacctgcgtccagaggttgcagagagg
atcctatcagaggagagtaagtctgtgacggcagcagcccaggtgtttctagaccaggtg
tgtctcctggacgaactgggatggtaccaggccctgctagatgccctggaagcagaagac
tataagggtctgtgtgaggccctgaaggggtgggactttcagaccctggagagcaccaag
ctacacagagtgctcctggaccggatagaaccccgcttcaccaaaatgatcaaacccaga
gacctgctgctacacctgggagattgtctcagaaagagagagtgtgaagagatacaggcg
atagagaacctgaagggaccaatagcagcagcagagaggctgactgactgtctgaagaga
agtgataaacaaaactggttcaaactgctgaagtcggctctgtactcctgtgaactgact
gatgccctgcagctactggaacctgacacagagtcatccatgtcaaagatggaagtgggt
gatgaggacgagggtgataccgtgatgactgtctccttccagtacactgagcagtctgac
gatgacgatgggatgctgatgagcggcaatcccttgacaccctctgaaaccccgcccacc
tctgcaacaggagccaatagtggtgttggtgaagtccagaaaggaggggagaagaggctg
agagaggaggaggagagaggaggaggaggaggaggagaaaagagtagaggaggagagaag
aaaatgagagagtatcagagagagctggctgaaccggtgtttcagggcaagaacacggtc
atctgtgccccaaccggctgtgggaagacggtggttgccctggcgatctgtgagcagcac
ctgaaggttaagggtaagggggcgaaggtcgtcttcatggcaaccaaggtggacgtcttc
aaccagcagtataaactgttccaggaacatttccaagagaaagaccctgacatcaggatc
gacggcctttgcggtaaccagggcgaccagctgtcgatgaaggtggtaatggagaacaat
gacatcatcgtcttaacccctcagatcctggtgaatgccatggcccaaggggaggttccc
tctctctcctgcttctctctgttgattctagatgagtgtcacaacaccacagggaaacac
ccctataacatcatcatgacgtcatacctggatgccaagctcagcacggagcagaacgga
caacacctgccccagattgtgggtctgacggcctcagtggggattggctcgttcaagaac
caatcagaggctgagaacaacatctgtcagctgtgtgccagtctggacagccgcatcatc
tccaccatacacacaaacactgacgagctacagtcctacgtgcacacacctgacaaagag
ttcttcctggtccagaagagacacacagaccctttcatcaggatcattcatgacatcatg
gctaagatagaaggactggccaagactgtctacaacatagagtccttgtcatccatagag
aatcgtgactacggcagtcagaagtatgaacagtggatcgttgatgttcagaagaaatgc
agagttctacagctgaaagaccaggaggaggagagtagagtctgtagggctctgtacaac
tacactgagcacctgaggaagtacaatgatgcgttgatcatcaacgaggatgccaggact
aaggatgcgctagagtacctgtcatctttcatacagcaggtgaagaacgcaggtcacgac
gcgacggagagacaactcaccgcttacttcgatggtcagcagggtgtactgcggggtttg
tccagcggggggcagaaggagaatcctaaattagacatgttacaatacatcctcgaggaa
cagtatcgacagaatgatgagaccaagtctgtgctgttcgttaggacacgggccctcgca
gacgccttgaagagctggatggaggagtctgactctctgaagttcctgaaaccaggagta
ctgattgggagaggacgcaagtccagccagctgactggctcaggcatgacgctgaactct
aagaaaggtgtgctggattcctttaagagttttgacaatcaaagcaagatcctgatcgct
acttcggtggccgacgagggcatcgatatcccacaatgcaacctggtattgatgtacgaa
tatgttggcaatgtggtcaagatggtccaagtcagaggtcgcggcagggcccaaggcagc
aagtgtatcttggtgtctgataaaaaggacaggattgataaagagaaacataacatggag
aaggagaagattgtagagagggccatcagaaacctacaggacacacctactgagatgctc
cgcaagatggaggtgtttcagcgtggggacaaggtgtgtcgtgacatggtgaagatggta
ccagagagaccccggactgaaggcagctaccagctcctctgctccaagtgtaaaaaacac
agctgttacacagacgacatcagagtactgcaggattctcaccacatcgttttggacccc
actctgttctctcgagctcgaacagaacctcaccctaaacccaaaggtttcatggggctg
gtgaagaccaggaagttattctgtcactgtggactggactggggcatagtggcctcatac
ctgaccatacagaatctgcctgtcttaaagatagagagctttgtggtgaagaactgtgtt
accgagcaacagaggtactacaggaaatggagagacgtgaccttttccatgaagaccttt
gaacttacagacatagctgatagctggaatccattgcttgaagaccagtaa
DBGET
integrated database retrieval system
