Oncorhynchus mykiss (rainbow trout): 110516497
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Entry
110516497 CDS
T07259
Name
(RefSeq) short transient receptor potential channel 5-like
KO
K04968
transient receptor potential cation channel subfamily C member 5
Organism
omy
Oncorhynchus mykiss (rainbow trout)
Brite
KEGG Orthology (KO) [BR:
omy00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
omy01009
]
110516497
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
omy04040
]
110516497
Protein phosphatases and associated proteins [BR:
omy01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
110516497
Ion channels [BR:
omy04040
]
Voltage-gated cation channels
Transient receptor potential channel (TRP)
110516497
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ion_trans
TRP_2
Ank_2
Ank
Ank_3
Ank_4
PKD_channel
Ank_5
YVC1_C
LHD_TRPY1
Motif
Other DBs
NCBI-GeneID:
110516497
NCBI-ProteinID:
XP_036845130
LinkDB
All DBs
Position
9:5276408..5364096
Genome browser
AA seq
1086 aa
AA seq
DB search
MNPMAQLYYKKVSYSPYRDRIPLQIVRAELELSAEERAYLTAVEKGDYAGVKHALREAEV
YYNIDVNCLDPLGRSALLIAIENENLEVMELLLDHGVATGDALLYAIRKEVVGAVELLLS
HRRPSGEKQVPSLMMDSQFSEFTPDITPVILAAHTNNYEIIKLLVQRKVAIPRPHQIRCD
CVQCVSSSEVDSLRHSRSRLNVYKALASPSLISLSSEDPILTAFRLGWELKELSKVENEF
RQEYEELSQQCKLFAKDLLDQARSSRELETILNHRDDSEELDSRETSHDLAKLKLAIKYQ
HKEFVAQPNCQQLLATLWYDGFPGWRRRHWAVKLVTCFIIGLLFPVFSMIYLLAPKSSLG
VFVKKPFIKFICHTASYLNFLFLLLLASQHIARTKLHMQGPPPTVVEWMILPWVLGFIWA
EIKEMWDGGFTEYIHDWWNLMDFAMNSLYLATISLKIVAYVKYNSSRPREEWEMWHPTLI
AEALFAIANIFSSLRLISLFTANSHLGPLQISLGRMLLDILKFLFIYCLVLLAFANGLNQ
LYFYYETNASDEPNNCKGIRCEKQNNAFSTLFETLQSLFWSIFGLLNLYVTNVKARHEFT
EFVGATMFGTYNVISLVVLLNMLIAMMNNSYQLIADHADIEWKFARTKLWMSYFDEGGTL
PPPFNIVPSPKSVWYLCLWVHHRLCRRGAPPADDTDKHHDLQEFTERHADSLIQNQHYQE
VIRSLVKRYVAAMIRSAKTDEGLTEENFKELKQDISSFRYEVLDLLGNRRPPRCHFSSSS
ETTLRNEGGISDEGGPDPDLDPSLASQEGSGAKRSKGVTFLTPTGSMEKKKKPKYGVSAL
VRSISGMEVVSMKREEEEQEGWGEEEGKEGWEEEEDEEEGKPKSNGVRREAIPSSSFIFP
SSSTSVSLSFARTRSRLQQLSSATSNKTTDSFKRLGLLFSRKAPPLPLSLGQSPPSYTIS
DGLLRPLRGRGSYDLGSVGHVTHSEMHLNQVGHTNPVGAPPASSGRANGRDSLLTLPLPP
PCPCQSLHCASNMADSSSHLLDSSESVFEGGGGGGGGGRVLGEGWVGPCDVIENSGGIED
SVTTQL
NT seq
3261 nt
NT seq
+upstream
nt +downstream
nt
atgaatccaatggctcagttgtattataagaaagtgagctactctccgtaccgagacaga
atcccactgcagattgttcgggctgagttggagctctctgctgaggagagggcctacctc
accgctgtggagaaaggggactatgcaggtgtgaaacatgctctgcgtgaggcggaggta
tactacaatatagatgtgaactgtctggaccctctggggcggagcgcgctgctcatcgct
atcgagaacgagaacctggaggtgatggagctgcttctggaccacggggttgccacggga
gacgccctgctctacgccatacggaaagaggtggtgggggccgtggagttgctgctgtct
cataggagacctagtggagagaaacaggtcccctctctgatgatggacagtcagttctca
gagtttactccagacataactccagtcatcctggcagcgcacaccaacaactatgagatc
attaaactactggtacagaggaaagtggccatccccagacctcaccagatacgatgtgac
tgtgtccagtgtgtttctagttctgaggtggacagcctacgtcactccaggtctcgtctg
aacgtctataaggcgctggcctctccctcgctcatctctctctccagtgaagaccccatc
ctcacggcctttagactgggctgggaactcaaagagctcagcaaggtggagaatgagttt
cgtcaggagtatgaggagctgtctcagcagtgtaagctgtttgctaaagacctgttggac
caggctaggagcagcagagaactggagactatactgaaccacagagatgacagtgaagaa
ctggactccagagagaccagccacgacctggccaaactcaaactggccatcaagtaccaa
cacaaagagtttgtagcccagcctaactgccagcagctcctagctactctgtggtacgat
gggttccccggctggaggaggagacactgggctgtcaaactagtgacctgtttcatcata
ggactgctcttccctgtcttctcaatgatctacctcctagcccccaagtcttccctgggt
gtgtttgtgaagaaacccttcatcaagtttatctgtcacacagcctcctatctgaacttc
ctcttcctcctcctcctcgcctcccaacacatcgccaggaccaagctacacatgcagggt
cctccgcctactgttgtggaatggatgatactaccgtgggtactgggttttatctgggct
gagattaaggagatgtgggatggaggttttacagagtatatacatgactggtggaacctg
atggattttgctatgaactccctctacctggctactatatcactgaagatagtggcttac
gttaagtacaactcctcccgtcctagagaagagtgggagatgtggcaccctaccctgata
gcagaagcattgtttgctatagctaatatcttcagttctctacgactcatctccctgttc
acagccaactcccacctgggacctctacagatctcactgggaaggatgctgctggacata
ctgaagttcctcttcatctactgtctggtactgctggcgttcgccaacggtctgaatcag
ctgtacttctactacgagaccaacgcctcagatgaacccaacaactgcaagggcattcgc
tgtgagaaacagaataacgctttctcaacgttgtttgagactctccagtctctgttctgg
tccatctttggcctgttaaacctgtacgtgactaacgttaaagctcgtcatgagttcact
gagtttgtgggagccaccatgttcggaacctacaacgtcatctctctggtggttctgctc
aacatgttgatcgccatgatgaacaactcctaccaactcatcgctgaccatgcagatata
gagtggaagtttgcccggaccaagttatggatgagttattttgacgaggggggtactctg
ccccctcccttcaacatcgttcccagtcctaagtcagtgtggtacctctgtctgtgggtt
caccatcgactctgtaggagaggagcgccccctgctgacgacacagacaaacaccacgac
ctacaagagttcacggagcgtcatgcagacagcctgatacagaatcaacattatcaggaa
gtgatccgtagcctggtgaagaggtacgtggcggccatgatacgcagcgccaagacggac
gagggattgaccgaggagaactttaaggagttaaagcaggacatctccagtttccgttat
gaggtgttagatctccttggtaaccgccggccccccagatgccacttctcttccagcagt
gaaaccacacttagaaatgagggaggaatcagcgacgaaggagggcctgaccctgacctt
gacccctccctagcgtcgcaggaggggagtggagccaagaggtcaaagggcgtgacattt
ctgaccccgacaggaagcatggagaagaagaagaagcctaaatatggcgtctccgctctg
gtccggagtatttcaggaatggaagtggtatccatgaagagggaggaagaggagcaggaa
ggatggggggaggaggaagggaaggagggatgggaggaggaagaagatgaggaagagggt
aaaccaaagagcaacggggtgaggagagaagccattccgtcctcttcttttatcttccct
tcttcctccacctccgtctccttatcctttgctcgcactcgaagtcgtctccagcagttg
tcgtcggcgacgtccaataagacaacagactcctttaagcgcctcggcttactgttctca
cgcaaagccccgccccttcccctctccctcggccaatctcctccttcctacaccatctct
gacggcttgctccgccccctgagaggtcgcgggtcatatgaccttggttcggtgggtcat
gtgacccacagcgagatgcacctgaaccaggtcggacatactaacccggtcggagcccct
cctgcttcctctggacgagccaatggcagggactctctgctaaccttgcccctcccacct
ccctgtccctgccaatccctacactgtgcttccaatatggccgactcgagctcccacctc
ctggactccagcgagagcgtcttcgagggaggaggaggaggaggaggggggggccgggtt
ttgggagaggggtgggtggggccttgtgatgtcatagagaactccggtggcatcgaagac
tctgtcactacacaactgtag
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