Oncorhynchus mykiss (rainbow trout): 110519383
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Entry
110519383 CDS
T07259
Name
(RefSeq) guanine nucleotide exchange protein smcr8a isoform X1
KO
K23611
guanine nucleotide exchange protein SMCR8
Organism
omy
Oncorhynchus mykiss (rainbow trout)
Pathway
omy04140
Autophagy - animal
Brite
KEGG Orthology (KO) [BR:
omy00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
110519383
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
omy04131
]
110519383
Membrane trafficking [BR:
omy04131
]
Autophagy
Other autophagy associated proteins
Rab associated proteins
110519383
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SMCR8_C
Folliculin
RecX_HTH3
Motif
Other DBs
NCBI-GeneID:
110519383
NCBI-ProteinID:
XP_036828408
LinkDB
All DBs
Position
Unknown
AA seq
1023 aa
AA seq
DB search
MIGSPDVLAFTSEGDLGGYPDAQVLPEEFSLPLLPLSHPWTSPAHFNRDFILVAEFSEQV
GPLPVRTIPDDPRVIGSFDLNHFSLRIMSVDYQAVAPGPQPHHQTASPSLQTLPRLAFSE
DSRVVLGDSKEGVVVSFLQDSRVVLGDSKEGAFAYVHHLTLYDLEARGFVRPFCMAYVSA
DERKIMLQFQELSLRFSRASECLKTGNRRAFACELQRKLHDLEYTRTILQATLQRISNES
AEIREEAELQNTANELASVDRSILDHRSLLHQVTSYPNRKLKDPGFLPYDPSLIPETLSL
TPDPPSPSYTPQLVSGASLGGGGWSARRFDRRLKPLEELSDCYFLSLTLEQLGNAERRLR
GDQSVLHNRRITHRLSRTLSHTQFLFQLWDQEEEEDLEEEGAGLEGGSDVMSHPVAGAGR
PSLESFFSCVEEVSIKLETGSGGAEPTLDPEGEGVTVETSPGSVSSGDSIEVLGTERSYR
TQGLTHVELRELSGGLGQGEGCDVVRSCAPAEVWMRRDVRSLARRANSEDSIEIISTSDS
IFPDDLIFNAITEEEPEEHGIMGSVIQEEEEEEAAGEDTPIQQHSTLGIVVHEEEEHTRH
QRILGNIVQTEGKEELEDTPTRLHSTLGIEVRELEEEKPERWDTPAPTSEPQRTLVHQVS
EEGSSQQYEGHHANGEVRGQAGRDSRRVVVPDLQVNFSIPLRLDVRGRGSGGRRLLGDTA
YRLSVDEASDCMSNISTSPSSSLPPTHLHGNHSASNPRRHQRQRRKAGPGALKFLRQNSF
SQNAVFCLLSGRPLVVIGGEEGSVRRTVAALSLYLPSPGRYGDAVQPYLATPLQLTDLLT
WRLIGIHRTSPTAPSMLHSLARYGRYLAVLDLDQRTLRSPAYHGHLIGRLANPHTLIGRG
STYLLHVESCLAELTAKAFLFSCSPDLSTLTSGRAQSSPGGQAPPICHSHSDLQLPSLPG
EDDDFTLTQRRRDFLCGRGFSGEDDLRVMHFLSDLIKQHHAGSGPPALRFSYSAVPLHRN
TTT
NT seq
3072 nt
NT seq
+upstream
nt +downstream
nt
atgattggatctcctgatgtgctggccttcaccagtgaaggggatttgggggggtaccca
gatgcccaggtcctgccagaggagttctccctccctctccttcccctctctcacccctgg
acctcccctgcccatttcaacagggacttcatactggtggctgagttctcagaacaggtg
ggtcccctaccggtccggaccatccctgatgaccccagagtgatcggttccttcgacctg
aaccatttctctctacgcatcatgtctgtcgactaccaagccgtagcccctggtcctcag
ccacaccaccagacagctagtccttccctccagaccctcccccgtctggccttctcagag
gactccagggtggtgctgggtgactctaaggagggggtggttgtgtccttcctccaggac
tccagggtggtgctgggtgactctaaggagggggcgtttgcctacgttcaccacctgacg
ctctatgacctggaggcccgaggcttcgtccgcccgttctgcatggcctacgtctctgcc
gatgagaggaagatcatgctgcagttccaggagctgtcgctccgcttctcccgcgcctcc
gagtgcctgaagaccggaaaccgacgggccttcgcctgcgagctgcagaggaagcttcat
gacctagagtacacacgaaccatccttcaagcaacgcttcaaaggatatccaatgagagt
gcggagatcagggaggaggcggagctgcagaacacggccaacgagcttgctagcgtggat
cgttccatcctggaccacagatccctcctccaccaggtcacttcctatcccaacaggaag
ttaaaagaccctggctttctgccctacgacccctccctgatcccagagaccctctccttg
actcctgatcccccctccccctcatacaccccccagctggtttccggggcgtcgctaggg
ggcgggggctggtcagcgaggcggttcgaccgccgtctgaagccgttggaggagctgagc
gactgctacttcctgtctctgacgctagaacagctgggcaatgcagaacgccgtctccgt
ggagaccagagtgttctacacaaccgtcgcatcacacacaggctctccaggacgctttca
cacacacagttcctgttccagctctgggaccaggaggaggaggaggacctggaggaggag
ggggcggggctagagggaggaagcgacgtgatgtcacatcctgtggcgggggcgggacga
ccgagcctggagtcgttcttctcctgcgtggaggaggtgtcaatcaaactggagacagga
agtggaggggcggagccgacacttgatcctgagggagaaggagtaaccgtggagacgagc
ccaggcagcgtgagcagcggagacagcattgaggttctggggacggagcgctcgtataga
acacagggactaacccacgtggaactcagagagttgtctggtgggttgggtcagggtgaa
ggctgtgatgtggtgcggagttgtgcccctgcggaggtgtggatgagacgtgacgtgcgg
tccctggcacggagggcgaacagcgaggacagtattgagatcatcagcacctcagactcc
atcttccccgacgacctcatcttcaacgccatcacagaggaggagcctgaggagcatgga
atcatgggtagtgtaatccaggaagaggaggaggaggaggcagcaggtgaggacacgccc
attcagcagcacagcaccctgggtattgtagttcacgaggaggaggagcacactcggcac
cagagaatcctgggtaatatagtccagacggagggaaaggaggagctggaggacactccc
actcggctgcacagcaccctgggtattgaagtccgggaattggaggaggagaagccagag
agatgggacactccggcccccacgtctgagccccagagaactctggtccaccaggtgtca
gaagagggctcctcccagcagtacgagggtcaccatgccaacggcgaggtcagaggtcag
gctgggcgtgacagcaggcgggtggtggtgcctgacctccaggtgaacttttctatcccc
ttgaggttagatgttagaggtcgggggtcaggggggcggcggttgctaggcgacaccgct
tacaggctgagtgtagatgaggcatcggactgtatgagcaacatcagcacctctccatct
tcctctctgccccccacacatctccatggcaaccacagcgctagtaatccgcgacgacat
cagcgccagaggaggaaggcgggtcctggagccctcaagttcctgcggcagaattccttc
tcccagaatgccgtgttctgcctgctaagtggacggccgctggtggtgattggtggagag
gagggttccgtgaggaggacggtcgctgccctctcgctctacctgccttcacctggtcgc
tatggagatgctgtgcagccttacctggccacgccccttcagctgacagacctgctcacc
tggagactcatcggaatccacaggacgtctcctacagctcccagcatgcttcactctctg
gctcgttacggacggtacctggccgtgctggacctggaccagcgtacactgagaagcccc
gcctaccacggacacctcattggccggctggccaacccccacactctgataggtcgtggc
agcacctaccttctccacgtggagagctgcctcgctgagctgaccgctaaggccttcctg
ttctcctgttctcctgacctttcaactctaacatcgggtagagctcagagttcacctggg
ggtcaggcaccacccatctgccacagccactcggacctccagcttcccagcctccccggg
gaggacgatgacttcacgctgactcagcgtcgcagggacttcctgtgtgggcggggtttc
agcggggaggatgacctccgggtgatgcacttcctgtctgacctcatcaaacagcaccac
gcaggaagtggtcctccggccctccgcttctcctacagtgccgtccctttacatagaaac
acgacaacatag
DBGET
integrated database retrieval system
