Oncorhynchus mykiss (rainbow trout): 110522588 Help Entry 110522588         CDS       T07259                                  Symbol thbs1b Name (RefSeq) thrombospondin-1 isoform X1   KO K16857   thrombospondin 1 Organism omy  Oncorhynchus mykiss (rainbow trout) Pathway omy04115   p53 signaling pathway omy04145   Phagosome omy04148   Efferocytosis omy04350   TGF-beta signaling pathway omy04510   Focal adhesion omy04512   ECM-receptor interaction omy04820   Cytoskeleton in muscle cells Brite KEGG Orthology (KO) [BR:omy00001]  09130 Environmental Information Processing   09132 Signal transduction    04350 TGF-beta signaling pathway     110522588 (thbs1b)   09133 Signaling molecules and interaction    04512 ECM-receptor interaction     110522588 (thbs1b)  09140 Cellular Processes   09141 Transport and catabolism    04145 Phagosome     110522588 (thbs1b)    04148 Efferocytosis     110522588 (thbs1b)   09143 Cell growth and death    04115 p53 signaling pathway     110522588 (thbs1b)   09144 Cellular community - eukaryotes    04510 Focal adhesion     110522588 (thbs1b)   09142 Cell motility    04820 Cytoskeleton in muscle cells     110522588 (thbs1b)  09180 Brite Hierarchies   09182 Protein families: genetic information processing    04131 Membrane trafficking [BR:omy04131]     110522588 (thbs1b)   09183 Protein families: signaling and cellular processes    00536 Glycosaminoglycan binding proteins [BR:omy00536]     110522588 (thbs1b) Membrane trafficking [BR:omy04131]  Endocytosis   Phagocytosis    Opsonins     110522588 (thbs1b) Glycosaminoglycan binding proteins [BR:omy00536]  Heparan sulfate / Heparin   Extracellular matrix molecules    110522588 (thbs1b) BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  TSP_C TSP_3 TSP_1 TSP1_spondin VWC TSP1_ADAMTS EGF_3 TSP1_CFP_C Laminin_G_3 EGF TSP1_CCN Laminin_G_2 cEGF Motif Other DBs NCBI-GeneID:  110522588 NCBI-ProteinID:  XP_036832124 Ensembl:  ENSOMYG00000014684 LinkDB All DBs Position 4:38626216..38651062 Genome browser AA seq 1174 aa AA seqDB search MKLTGIFLLLMLLTCESVRVAENRDDNSVYDLFELVQVSKKNHGVTLVKGDDPYSPAYKI LNPDLIPELPESSFRDLIDSIHAERGFLLLLNFKQFKRTRGSLLTVEKRDGSGAVFEIVS NGKANTLDVVFSTVNKQQVVSIEDVDLATGHWKNITLFVQEDRAQLYVGCEEVNTAELDA PIQSILTQETPATARLRIGKGAVKDRFMGVLQNVRFVFGTTLDAILRNKGCQNSVLTDEI VLIDDTINGSSPAIRTDYTGHKTKDLQMICGFSCEDLAGMFKELKGLGVVVKELSNELRK VTDENKFLMNRVGIHSGVCLHNGIVHKNKAEWTVDDCTECTCQNSATVCRKISCPLIPCA NATVPDGECCPRCGTPSDYAEDGWSLWSEWTHCSVSCGRGIQQRGRSCDRINNNCEGTSV QTRDCYLQECDKRFKQDGAWSHWSPWSSCSVTCGAGVITRIRLCNSPTPQLEGKDCQGEG RQTEKCTKSPCPINGNWGPWSLWDTCSATCGGGAQTRKRLCNDPAPKYGGKECQGDSKAT QQCNKNACPIDGCLSNPCFPGTKCTSFPDGTWRCGKCPSAYSGDGIKCEDIDECKEVPDA CFVFNGVHRCENTDPGYNCLPCPARYSGPQPFGRGVEEATAKKQVCTPRNPCLDGSHDCN KNARCNYLGQFTDPMYRCECKPGYAGNGHICGEDTDLDGWPNQDLVCVENATYHCKKDNC PNLPNSGQEDYDKDGVGDACDNDDDNDGIADDRDNCPFVYNPRQYDYDRDDIGDRCDNCP YNSNPDQTDTDNNGEGDACSVDIDGDGILNEKDNCPYVYNVDQRDTDLDGVGDMCDNCPL EHNPDQVDSDDDRVGDKCDSNQDIDEDGHQNNLDNCPYIPNANQADHDKDGKGDACDHDD DNDGIPDEKDNCRLAFNPDQIDSDGDGRGDACKDDFDQDNVPDIYDVCPENFDISETDFR KFQMVPLDPKGTSQIDPNWVVRHQGKELVQTVNCDPGIAVGFDEFNSVDFSGTFFINTER DDDYAGFVFGYQSSSRFYVVMWKQITQTYWNNKPTKAQGYSGLSIKVVNSTTGPGEHLRN ALWHTGNTPGQVKTLWHDPKNIGWKDFTAYRWHLIHRPRTGHIRVVMYEGKKIMADSGSI YDKTYAGGRLGLFVFSQEMVYFSDLKYECRGKEQ NT seq 3525 nt NT seq  +upstreamnt  +downstreamnt atgaagttgacaggaatatttctgctgttgatgcttttgacctgcgagagcgtacgagtt gcagagaaccgagacgacaatagcgtgtacgacctgttcgagctggtccaagtctccaag aagaaccacggagtgaccctagtgaagggcgacgacccatacagtcccgcctacaagatc ctcaacccggacctgatccccgagctccccgagagctccttcagggacctcatcgattcc atccatgccgagaggggcttcctcctcctgcttaacttcaagcagttcaagcggaccagg ggctccctcttgaccgtggagaagcgggacggatcaggagcagtgttcgagattgtctcg aatggaaaagcgaacaccctggatgtggttttctccaccgttaataagcaacaggtggtc tcgatagaagatgtggacttggcgacgggccactggaagaatattacgctgttcgtgcag gaggaccgggcgcagctatatgttggctgtgaggaggtgaacacggcggaactggacgct cccatccagagcatcctcactcaggagactcccgccacagcgcgcctcaggatcgggaag ggagcggtgaaggaccggttcatgggggtgctccaaaacgtgcgcttcgtctttggaacc actttggacgcgattctgcgcaacaagggatgtcaaaactctgttctgactgatgagatc gtccttatcgacgacaccatcaatgggtccagccctgccattaggacggactacactggc cacaaaactaaagacctgcagatgatctgtgggttctcctgcgaggacctggctggcatg ttcaaggaattgaaggggctgggagtggtggtgaaggagctgtccaatgagctacgcaaa gtgacggacgagaacaagtttttgatgaacagagttgggatccacagtggagtctgtctg cacaacggcatcgtccacaagaacaaggccgagtggaccgttgacgactgtaccgagtgc acttgtcaaaactctgccaccgtgtgccgtaagatctcctgccccctgatcccgtgtgcc aacgcaaccgtgcccgatggagagtgctgcccgcgctgtggaacaccgagtgactatgcg gaggatggatggtccctctggtctgaatggacccactgttccgtgtcttgtgggcgggga attcagcagagaggccgctcctgcgaccgcatcaacaacaactgcgagggaacctcggtc caaaccagggactgctaccttcaggagtgtgacaaacgcttcaagcaggacggtgcctgg agccactggtccccctggtcatcctgctcggtcacctgtggggcgggtgtcatcacccgt atccgcctctgcaactcccccacaccccagctggaaggcaaggactgccaaggagaagga agacagactgagaagtgcaccaagtcaccctgcccaatcaacggtaactggggaccctgg tcgctatgggatacctgctctgccacctgtgggggaggagctcagacacgtaaacgcctc tgcaacgaccccgcccctaaatatggtggtaaggagtgccagggtgactccaaggccact cagcagtgcaacaagaacgcctgtcccatcgatggctgtctgtccaacccttgcttccct gggaccaagtgcaccagcttccctgatggaacatggaggtgtggaaaatgcccctctgct tactctggtgatggcatcaagtgcgaggacattgacgagtgcaaagaggttcctgacgct tgcttcgtgttcaacggagtccaccgctgtgagaacactgaccctggttacaactgtctg ccctgtcccgcacgctactctggacctcagcccttcggcaggggagtggaggaggccacc gccaagaaacaggtgtgtacaccacgtaacccctgcctggatgggagccacgactgcaac aagaatgcccgctgtaactacctgggacaatttaccgaccccatgtaccgctgtgagtgt aagcctggctatgctggaaatggacacatctgtggtgaggacacggacctggacggatgg cccaaccaagacctggtctgtgtggagaacgccacctaccactgcaagaaggacaactgc cccaaccttcccaactcaggccaagaagactacgacaaggatggtgttggtgacgcttgt gacaacgatgatgacaatgatggtattgctgacgacagggataactgtccgttcgtgtac aaccccaggcaatacgactatgacagagatgatattggagatcgttgtgataactgtcct tacaacagcaaccctgaccagaccgacacagacaacaacggggaaggagacgcctgctct gtggacattgatggagatggcattctgaatgagaaagacaactgcccgtacgtctacaac gtggaccagagagacaccgacctggacggtgtgggagacatgtgtgacaactgtcctctg gaacacaaccctgaccaggttgactctgatgacgaccgtgtgggagataagtgtgacagc aaccaggacatcgatgaagatggccaccagaacaacctggacaactgcccctacatcccc aacgctaaccaggccgaccacgacaaagacggaaagggagacgcctgcgaccacgatgat gacaatgacgggatcccagacgagaaagataactgcagattggccttcaaccctgaccag atcgactccgatggtgatggtcgaggagacgcttgcaaagatgactttgaccaagacaat gtgcctgacatctacgacgtgtgtccggagaactttgacatcagcgagacggacttcagg aagttccagatggttcccctggaccccaagggaacgtcccagatcgaccccaactgggtg gtcagacatcagggcaaagagctggtccagaccgtcaactgtgaccctggcattgctgtt ggttttgatgagttcaactcggtggacttcagtggaaccttcttcatcaacacagagcga gatgacgactacgccggctttgtgttcggctaccagtccagctccaggttctacgtggtg atgtggaagcagatcacacagacctactggaacaacaaacccaccaaggctcagggatac tcaggactgtccatcaaggtggtcaactccactactggacctggtgagcacctcaggaac gctctctggcacacgggtaacaccccaggacaggtgaagactctttggcacgacccgaag aacattggctggaaagacttcacagcctacagatggcacctgatccacagaccaagaaca ggacacatcagagtggtcatgtacgaggggaagaagatcatggctgattctgggagcata tatgacaagacgtatgcaggcggaagactaggcctctttgtcttctcgcaagagatggta tacttctcagacctcaagtatgaatgcagaggtaaggaacaatga

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