Oncorhynchus mykiss (rainbow trout): 110529176 Help Entry 110529176         CDS       T07259                                  Name (RefSeq) thrombospondin-1   KO K16857   thrombospondin 1 Organism omy  Oncorhynchus mykiss (rainbow trout) Pathway omy04115   p53 signaling pathway omy04145   Phagosome omy04148   Efferocytosis omy04350   TGF-beta signaling pathway omy04510   Focal adhesion omy04512   ECM-receptor interaction omy04820   Cytoskeleton in muscle cells Brite KEGG Orthology (KO) [BR:omy00001]  09130 Environmental Information Processing   09132 Signal transduction    04350 TGF-beta signaling pathway     110529176   09133 Signaling molecules and interaction    04512 ECM-receptor interaction     110529176  09140 Cellular Processes   09141 Transport and catabolism    04145 Phagosome     110529176    04148 Efferocytosis     110529176   09143 Cell growth and death    04115 p53 signaling pathway     110529176   09144 Cellular community - eukaryotes    04510 Focal adhesion     110529176   09142 Cell motility    04820 Cytoskeleton in muscle cells     110529176  09180 Brite Hierarchies   09182 Protein families: genetic information processing    04131 Membrane trafficking [BR:omy04131]     110529176   09183 Protein families: signaling and cellular processes    00536 Glycosaminoglycan binding proteins [BR:omy00536]     110529176 Membrane trafficking [BR:omy04131]  Endocytosis   Phagocytosis    Opsonins     110529176 Glycosaminoglycan binding proteins [BR:omy00536]  Heparan sulfate / Heparin   Extracellular matrix molecules    110529176 BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  TSP_C TSP_3 TSP_1 TSP1_spondin VWC TSP1_ADAMTS EGF_3 TSP1_CFP_C Laminin_G_3 EGF TSP1_CCN cEGF Laminin_G_2 Motif Other DBs NCBI-GeneID:  110529176 NCBI-ProteinID:  XP_036840548 Ensembl:  ENSOMYG00000004674 UniProt:  A0A8C7NLN1 LinkDB All DBs Position 8:complement(7670795..7689709) Genome browser AA seq 1172 aa AA seqDB search MKLTGIFLLLMLWTCESVRVAESRDDNSVYDLFELVHVSKKNHGVTLVKGDDPYSPAYKI LNPDLIPEVPESSFRDLIDSIHAERGFLLLLNFKQFKRTRGSLLTVEKRDGSGAVFEIVS NGKANTLDVVFSTVNKQQVVSIEDVDLATGHWKNITLFVQEDRAQLYVGCEEVNTAELDA PIQSILTQETPITARLRIGKGAVKDRFMGVLQNVRFVFGTTLEAILRNKGCQNSVLTDRI IVMDNPINGSSPAIRTDYTGHKTKDLQMICGFSCEDLAGMFKELKGLGVVVKELSNELRK VTDENKLLMNRAGIHSGVCLHNGIVHKNKAEWTVDDCTECTCQNSATVCRKISCPLIPCA NATVSDGECCPRCGTLSDYAEDGWSLWSEWTHCSVSCGRGIQQRGRSCDRINNNCEGTSV QTRDCYLQECDKRFRQDGAWSHWSPWSSCSVTCGAGVITRIRLCNSPTPQLGGKDCQGEG RQTEKCTKSPCPVNGNWGPWSLWDTCSSTCGGGAQTRKRLCNDPAPKYGGKECQGDSKAT QLCNRNACPVDGCLSNPCFPGTKCTSVPDGTWNCGKCPTGYSGDGIKCEDIDECKEVPDA CFVFNGVHRCENTDPGYNCLPCPARYSGPQPFGRGVEEATAKKQVCTPRNPCLDGSHDCN KNARCNYLGHFADPMYRCECKPGYAGNGHICGEDTDLDGWPNQDLVCVENATYHCKKDNC PNLPNSGQEDYDMDGVGDACDNDDDNDGIPDDRDNCPFVYNPRQYDYDRDDVGDRCDNCP YNSNPDQTDTDNNGEGDACSVDIDGDGILNEKDNCPYVYNVDQRDTDLDGVGDMCDNCPL EHNPDQVDSDDDRVGDKCDSNQDIDEDGHQNNLDNCPYIPNANQADHDKDGKGDACDHDD DNDGIPDEKDNCRLAFNPDQLDSDGDGRGDVCKDDFDQDNVPDIYDVCPENFDISETDFR KFQMVPLDPKGTSQIDPNWVVRHQGKELVQTVNCDPGIAVGFDEFNAVDFSGTFFINTER DDDYAGFVFGYQSSSRFYVVMWKQITQTYWSNKPTKAQGYSGLSIKVVNSTTGPGEHLRN ALWHTGNTPGQVRTLWHDPKNVGWKDFTAYRWHLIHRPRTGHIRVVMYEGKRIMKDSGSI YDKTYAGGRLGLFVFSQEMVYFSDLKYECRDA NT seq 3519 nt NT seq  +upstreamnt  +downstreamnt atgaagttgacaggaatatttctgctattgatgctttggacctgcgagagcgtacgagtt gcagagagccgagacgacaatagcgtgtacgacctgttcgagctggtccacgtctccaag aagaaccacggagtgaccctagtgaagggcgacgacccatacagtcccgcctacaagatc ctcaacccggacctgatccccgaggtccccgagagctccttcagggacctcattgattcc atccacgcggagaggggattccttctcctcctcaacttcaagcagttcaagcggaccagg ggctccctcctaacggtggaaaagcgtgacggatccggagccgtgttcgagatcgtctcc aacgggaaagcgaacaccctggatgtggttttctccaccgtgaataaacaacaggtggtg tcgatagaagatgtggacttggcgacgggccactggaagaatattacgctgttcgtgcag gaggaccgggcgcagctgtatgttggctgtgaggaggtgaacacggcggaactggacgct cccatccagagcatcctcactcaggagactcccatcaccgcgcgtctcagaatcgggaaa ggagcggtgaaggaccggttcatgggggtgctccaaaacgttcgctttgtctttggaacc accttagaagcgatactgcgcaacaaaggatgccaaaactctgttctgaccgatagaatc atcgtcatggacaaccccatcaatgggtccagccctgccattaggactgactacactggc cacaaaactaaagacctgcagatgatctgtgggttctcctgtgaggacctggctggcatg ttcaaggaactgaaggggctgggagtggtggtgaaggagctgtctaacgagctgcgcaaa gtgacggatgagaacaagctgttgatgaacagagcggggatccacagtggagtctgtctg cacaacggcatcgtccacaagaacaaggccgagtggactgtcgacgactgcactgagtgc acttgtcagaactctgccaccgtatgccgcaagatctcctgcccactgatcccctgtgcc aacgccaccgtgtctgatggagagtgttgcccgcgctgtggaacactgagtgactatgcg gaggacggctggtccctctggtctgaatggacccactgttccgtgtcttgtgggcggggc attcagcagaggggccgttcctgcgaccgcatcaacaacaactgcgagggaacctccgtc caaaccagggactgctaccttcaggagtgtgacaaacgcttcaggcaggacggcgcctgg agccactggtccccctggtcatcctgctcggtcacctgtggggcgggtgtcatcacccgt attcgcctctgcaactcccccacaccccagctgggaggcaaggactgccaaggagaggga agacagactgagaagtgcaccaagtcaccctgccccgtcaacggtaactggggaccctgg tcgctatgggatacctgctcttccacctgtgggggaggagcccagacacgtaaacgtctc tgcaacgaccccgcccccaaatatggtggcaaggagtgccagggtgactccaaggccact cagctgtgcaacaggaacgcctgtcccgtcgatggttgtctgtctaacccctgctttcct gggaccaagtgcaccagcgttcccgatggaacatggaattgtgggaaatgtcccactggt tactctggtgacggcatcaagtgcgaggacattgacgagtgcaaagaggttcctgacgct tgcttcgtgttcaacggagtccaccgctgtgagaacactgaccctggttacaactgtctg ccctgtcccgcacgctactctggacctcagcccttcggcaggggagtggaggaggccacc gccaagaaacaggtgtgtacaccacgtaacccctgcttggatgggagccacgactgcaac aagaacgcacgctgtaactacctgggacactttgccgaccccatgtaccgctgtgagtgt aagcctggctatgccggaaacggacacatctgtggtgaggacacggacctggacggatgg cccaaccaagacctggtctgtgtggagaacgccacctaccactgcaagaaggacaactgc cccaaccttcccaactcaggccaagaagactacgacatggatggtgttggtgacgcgtgt gacaacgatgatgacaacgatggcattcctgacgacagggataactgtccgttcgtgtac aaccccaggcaatatgactatgacagagatgatgttggagatcgttgtgataactgtcct tacaacagcaaccctgaccagaccgacacagacaacaacggggaaggagacgcctgctct gtggacattgatggagatggtattctgaatgagaaagacaactgcccgtatgtctacaac gtggaccagagagacaccgacctggacggtgtgggagacatgtgtgacaactgtcctctg gaacacaaccctgaccaggttgactctgatgacgaccgtgtgggagacaagtgtgacagc aaccaggacatcgatgaggacggccaccagaacaacctggacaactgcccctacatcccc aacgctaaccaggccgaccacgacaaagacggcaagggagacgcctgcgaccacgatgac gacaacgacgggatccctgatgagaaagacaactgcagactggccttcaaccctgaccag ctcgactctgatggtgacggtcgcggagatgtttgcaaagatgattttgaccaagacaac gtccctgacatctacgacgtgtgtccggagaactttgacatcagcgaaacggacttcagg aagttccagatggttcccctggaccccaagggaacgtcccagatcgaccccaactgggtg gtcagacatcagggcaaagagctggtccagaccgtcaactgtgaccctggcattgctgtt ggttttgatgagttcaacgcggtggacttcagtggaaccttcttcatcaacacagagaga gatgatgattacgccggctttgtgttcggctaccagtccagctccaggttctacgttgtg atgtggaagcagatcacacagacttactggagcaacaaacccaccaaggctcagggatac tcaggactgtccatcaaggtggtcaactctactactggacctggagagcacctcaggaac gctctctggcacacgggcaacaccccaggacaggtgaggactctgtggcacgaccctaag aatgttggctggaaagacttcacagcctacagatggcacctgatccacagaccaagaaca ggacacatcagagtggtcatgtacgaggggaagaggatcatgaaggattccgggagcata tacgacaagacgtacgcaggcggaagactaggcctctttgtcttctcgcaagagatggta tacttctcagacctcaagtatgaatgcagagatgcataa

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