Oncorhynchus mykiss (rainbow trout): 110532324
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Entry
110532324 CDS
T07259
Symbol
tardbpl
Name
(RefSeq) TAR DNA binding protein, like isoform X2
KO
K23600
TAR DNA-binding protein 43
Organism
omy
Oncorhynchus mykiss (rainbow trout)
Pathway
omy03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
omy00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
110532324 (tardbpl)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
omy03019
]
110532324 (tardbpl)
Messenger RNA biogenesis [BR:
omy03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Negative regulators of mRNA 3' end processing
110532324 (tardbpl)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TDP-43_N
RRM_1
TDP-43_C
RRM_7
RRM_PARP14_3
RRM_3
Motif
Other DBs
NCBI-GeneID:
110532324
NCBI-ProteinID:
XP_021471787
Ensembl:
ENSOMYG00000019329
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All DBs
Position
9:51705866..51710352
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AA seq
392 aa
AA seq
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MAELYIRVGEDENEEPMEIPSEDDGTVLLSTVAAQFPGACGLRYRSPASQCMRGVRLVEG
ILHAPENDWGSLVYVVNYPKDNKRKMDEMDAASAVKMKRGIDRTSDLIILGLPWKTSEQD
LKDYFATFGEVIMVQVKRDVKTGNSKGFGFVRFTEYETQSKVISQRHMIDGRWCDCKLPN
SKAGPDEPMRNCKIFVGRCTEDITTDELRQFFMQYGEVTDVFIPKPFRAFAFVTFSDDQV
ASALCGEDLIIKGVSVHISNAEPKHNNSRQMMDRGAGGFGGQGYGGGRGGLPSSGSSGVN
FGGFSLNPAMMAAALQSMLANQQGQTNVAGTAIAGQTSATGDQSQAYSSSSTSYSSPGAA
SLGWAAGTNSASGSGFSSGFGTMESKSSGWGM
NT seq
1179 nt
NT seq
+upstream
nt +downstream
nt
atggcagaattatacattcgcgtgggagaggatgaaaacgaagagccaatggagatccca
tctgaggatgatggcactgttttgctgtcaacagtagcagcccagtttcccggagcgtgc
ggcctacgttacaggagccctgcgtctcagtgcatgcgaggcgtccgtctggttgagggc
atcttgcatgcacctgagaatgactggggtagtctggtgtacgtcgtcaactacccaaaa
gataacaaaaggaagatggatgaaatggatgccgcctctgctgtaaaaatgaagagaggt
attgatagaacatcagacctcattatccttgggttgccatggaaaacatctgagcaagat
ttgaaagactactttgccacttttggagaagtcatcatggtgcaggtcaaaagagatgtc
aagactgggaactcaaaagggtttggctttgttcggttcactgagtatgagactcaatcc
aaagtgatttctcagcgacacatgatcgatggaagatggtgtgactgcaaactaccaaac
tctaaggcagggcctgatgagcccatgcgcaactgtaaaatctttgttggccgctgcaca
gaggacattaccactgatgagctccggcagttcttcatgcagtatggcgaggtcaccgac
gtcttcattcctaaacccttccgggcgtttgcctttgtcactttctcagatgaccaggtt
gcctcagcattgtgcggagaagacctgatcatcaagggtgtcagcgtgcacatctccaac
gccgagcctaagcacaataatagtaggcaaatgatggatcgtggggctggtgggttcggg
ggtcagggctatggcggtggtcgtggagggctaccgagcagtggcagtagcggggtgaat
tttgggggctttagccttaacccagccatgatggctgccgctctgcaaagtatgctggct
aaccagcagggtcagaccaatgtggcaggcactgccatcgccgggcagacaagtgccacc
ggagatcaaagccaagcctatagttctagcagcaccagttacagcagccccggcgcagct
agtcttgggtgggctgcaggcactaactctgcctccggcagtgggttcagctctggcttt
ggcactatggagtcaaagtcatcaggttggggaatgtag
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