Oncorhynchus mykiss (rainbow trout): 110537686
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Entry
110537686 CDS
T07259
Name
(RefSeq) HLA class II histocompatibility antigen, DQ beta 1 chain isoform X1
KO
K06752
MHC class II antigen
Organism
omy
Oncorhynchus mykiss (rainbow trout)
Pathway
omy04145
Phagosome
omy04514
Cell adhesion molecule (CAM) interaction
omy04672
Intestinal immune network for IgA production
omy05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
omy00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04514 Cell adhesion molecule (CAM) interaction
110537686
09140 Cellular Processes
09141 Transport and catabolism
04145 Phagosome
110537686
09150 Organismal Systems
09151 Immune system
04672 Intestinal immune network for IgA production
110537686
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
110537686
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
omy04147
]
110537686
Exosome [BR:
omy04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
110537686
Exosomal proteins of epithelial cells
110537686
Exosomal proteins of breast milk
110537686
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
C1-set
C2-set_2
MHC_II_beta
Psg1
Ig_3
C2-set_3
Psb34
YsaB
DUF3040
Motif
Other DBs
NCBI-GeneID:
110537686
NCBI-ProteinID:
XP_021479590
Ensembl:
ENSOMYG00000013589
LinkDB
All DBs
Position
12:45845245..45848770
Genome browser
AA seq
285 aa
AA seq
DB search
MYVLNCFPIHLLLLFSSLSEVVDSSDEDFAHDDAWCRFSSRDLHDMEYILEHHFNKIMVA
QYNSTTERWTGYTAWGVISAEKWNEDPDEIPRRRSDMDVLCKPYANRIYNTTEMFMVEPN
VTLRLEGPSSDSSLVCSVHFFYPKHIRVTWLRNGEEVTSDVTSTDVLANGLWSYQIQSYL
KYTPTTGERITCMVEHISQTEPKLYYWDPSLPKSEKNKIVIGVCGLLLGVVFVVAGLIYW
KKSTGRLLGLIGELDYGTCDDGLFSCLLIQYLCFTFNRTAVGSYW
NT seq
858 nt
NT seq
+upstream
nt +downstream
nt
atgtatgtgctgaattgcttccccatccacctgctgctcctcttctcctctctgtctgaa
gtagttgattcctcagatgaagattttgcacacgatgatgcatggtgtcggtttagctcc
agagatttacatgacatggagtatattttagagcatcattttaacaagatcatggtggct
cagtacaacagcaccacagagaggtggacaggatacacagcatggggagtgatatctgca
gaaaagtggaatgaggacccagatgagatccccaggaggagatcagatatggatgtgtta
tgcaagccatatgctaatcggatctacaacacaacagagatgtttatggttgagcccaat
gtcacactgaggctagaggggccatccagtgactccagccttgtgtgtagtgtccacttc
ttctaccctaaacacatcagagtgacgtggctgaggaacggggaggaagtgacctcagat
gtgacctccactgacgtactggccaatggactctggagctaccagatacagtcctatttg
aagtacacacccacaactggagagaggatcacctgtatggtggagcacatcagccagact
gagcccaaactttattactgggacccctccttgcctaagtctgagaagaataagatagtg
atcggtgtctgtgggctgctgctgggggtggtctttgtagtagctggactgatctactgg
aagaaatctactggacggctgttgggtcttattggtgaacttgattatgggacttgtgat
gatggtttattctcatgcctcttaattcagtatctctgttttactttcaacaggacggct
gttgggtcttattggtga
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