Oncorhynchus nerka (sockeye salmon): 115101042
Help
Entry
115101042 CDS
T07952
Name
(RefSeq) LOW QUALITY PROTEIN: toll-like receptor 8
KO
K10170
toll-like receptor 8
Organism
one
Oncorhynchus nerka (sockeye salmon)
Pathway
one04620
Toll-like receptor signaling pathway
Brite
KEGG Orthology (KO) [BR:
one00001
]
09150 Organismal Systems
09151 Immune system
04620 Toll-like receptor signaling pathway
115101042
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04054 Pattern recognition receptors [BR:
one04054
]
115101042
04090 CD molecules [BR:
one04090
]
115101042
Pattern recognition receptors [BR:
one04054
]
Membrane-bound pattern recognition receptors
Toll-like receptors
115101042
CD molecules [BR:
one04090
]
Proteins
115101042
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LRR_8
LRR_4
LRR_1
LRR_5
TIR
TIR_2
LRR_12
LRR_LRWD1
LRR_9
Motif
Other DBs
NCBI-GeneID:
115101042
NCBI-ProteinID:
XP_029476065
LinkDB
All DBs
Position
LG19:9034961..9046423
Genome browser
AA seq
1035 aa
AA seq
DB search
MKEQHRCPLYTSFQRLLLLLVSLCLSPSCSGRTWAQRKLPCDVISLNHSLAYDCSCRKLL
QVPHDISWNATELDLSSNQIKTLSSSSFWNLQNLTLLDLSYNFNPQNIHKIEDQTFSMLD
QLEALLLDGNGLCTVPRGLPSGLQILFLRYNDIRTVTPEDFRDILRIKVIHLSDNCQGSV
CSGTLDIANHTFSSLTNLTNLTLSFNRLKVIPNFLPASLQLLKLERNLITHIQQHDLSAL
TNLSALDLSGNCPVCSNTPFLCVPCNTPNGALQIHPDAFRSLSQLQELSLSGNSLEHLQT
SWFENLTNLHYLYLSFNRLVGEIANGDFLSVLPFVEVMDLSYNNAGQNSHNLTLSKNFSK
LASLKTLHLENYVFSALYKNHLEPLYCLANLSVLNLGTNFIYWTDLSLFEKFHNLSSVGL
SENSLTFLSKRVDALFVNGYGWGYEPDIDRYGPFIHKDKFYRRHLPNIKPECLAYGPVLD
LSKNNIFHINPDMLQGLNNTACLNLSSNFIGDMFNGSEFVHFSKLKYLDLSQNKVYLRYE
HAFSELTALEVLDLSYNKHYFLVAGLNHSLAFLEHLESLKVLNLSWNEISTLTDKTMSSS
SLQELNFQGNRLDIMWNEGQDFNHLFRELNNLTSLDLSYNQLRHIPSEVYHNFPKALRHL
TLSKNGLEDFNWTMLTQLPHLEELDLSKNHLEQVALTVSTLNSSLRLLDLSHNRISQLAP
GFLSGARSLYVLNLSFNLLELINQTTFETGAENHLQQLSLQGNPIHCTCDLLEFQLWMRS
NEVEIPLLASGVTCDMPMERKGRSVLSYDIEECVKDDNAMAFCILTLLLVVHVLLVSLTA
HLFYWDLSYILDYCGAKLKHQCLLQHTACVYDAFVMYDTTDPLASDWVLNHLRVELEERG
ERVRPLCLEERDWMPGVPIMDNLSNSVRQSRKTVFVLTEGFLSRGVVKMAALLVQQRLVE
EGVDAMVLLLLQPQVLRRSRILHLRRRLCRRSVLEWPATACPAAQRWFWHNLKRAIRKDQ
RATHASLHGTYFTGR
NT seq
3108 nt
NT seq
+upstream
nt +downstream
nt
atgaaggaacaacaccggtgtcccctttacacttcctttcagaggctgctgttactccta
gtgtcgctgtgtctctccccctcctgctctgggaggacctgggctcagaggaaactaccc
tgtgatgtcatctctctcaaccattcactggcctacgactgctcgtgcaggaagctactc
caggtaccccacgatatcagctggaatgccacagagctcgacctgtcctccaaccaaatc
aagacactctccagctcctcgttctggaacctccagaatctgactctgctagaccttagc
tataacttcaacccccagaacatccataagatagaggaccaaacattctccatgctggat
cagctggaggcactgctccttgacggtaatggcctttgcacagtgccgaggggccttcct
tctgggttgcagattttgtttctgaggtacaatgacatcaggactgtaacaccggaagac
ttcagggatattctacgaattaaagtcatccatttaagtgacaactgccaagggagtgtc
tgtagtgggaccctggatattgcaaaccacactttttccagcctcactaacctgacaaac
ctgacactgtcttttaacagactgaaagtaatccctaattttctccccgcatccctccag
ctgctcaaactcgaacggaacctaatcacccacattcaacagcatgacctgagtgcactc
actaatctgagcgctctagacctttcgggtaactgtcctgtgtgttctaacaccccgttc
ctctgcgttccctgtaatacacccaacggggcactacagatccacccagatgccttcagg
agcctctcccagctgcaggagctgagcctatcaggaaactccctagagcacctacaaaca
tcctggtttgagaacctcaccaacttacactacctgtacctctcatttaatcgtctggtt
ggggagatagccaatggggacttcctctctgtgctacctttcgtagaagtgatggacttg
tcttacaataatgctggacaaaattcccacaacttgaccctctcaaagaatttttccaaa
ctggcatctctgaagacattacacctagaaaactatgttttttcagctctttacaaaaat
cacttggaaccactttactgtttagctaatctgtctgtcctcaatttgggaaccaacttc
atctattggacagacctttcactttttgaaaagttccacaatttatccagtgttggcctc
tcagagaacagtctgactttcctgtccaagagggtagatgccttgtttgtgaatgggtat
ggctggggctatgagccagatatagacaggtacgggcctttcatacacaaggataaattc
taccgtcgccatttgcctaacattaaaccagagtgtcttgcgtacggtccagtgctcgac
ctcagcaaaaacaacatcttccacataaaccctgatatgctgcagggcctgaacaacaca
gcttgtctcaacctgtcatctaacttcattggagacatgttcaacggcagtgagtttgta
catttctccaagctgaagtacttggatctatcccagaataaagtctacctgcgctatgag
catgcattcagtgaactgacagcactggaggtgttggacttgagttataataaacattac
tttctggtggcagggctaaaccacagtttagcgttcctagaacacctggaatctctgaag
gttctgaacttgagctggaatgagatcagcaccctcactgataaaaccatgtcaagcagc
tccctgcaagaattgaacttccagggcaaccgcctggacatcatgtggaacgagggtcag
gactttaatcatcttttcagagaacttaataacctgacgtccctggatctgtcatacaac
cagctccgccacatcccatctgaggtataccacaacttccccaaggccctgagacacttg
actctgagtaaaaacggacttgaggactttaactggacgatgctcacacaactgccacat
ctggaggagctggacttgagtaagaaccacctggagcaggtggccttaaccgtctccact
cttaacagttcactgaggctgctggacctgagccataacaggatttcccagctagcgcct
ggtttcctcagcggcgccaggagcctgtatgtgctgaacctcagcttcaacctgctggag
ctcatcaaccagacaacgtttgaaacaggagctgagaaccacctccagcagctgtcacta
caggggaacccgatccactgcacctgtgacttgctggagttccaactgtggatgaggagc
aatgaggtggagatccctctgctggccagcggggtgacgtgtgacatgcccatggagagg
aagggcaggtctgtgctgagttacgacatagaggaatgcgtgaaggatgacaacgcaatg
gccttttgcatcctcacgttgttactcgttgttcacgttctgttggtatctctcacagca
cacctcttttactgggacctgtcctatatccttgactactgtggggccaagctgaagcac
caatgtctcttacagcacacagcctgtgtctacgatgccttcgtcatgtatgacaccaca
gacccgctggcctctgattgggtgttgaaccaccttagggtggaactagaggagcgcgga
gagagggttcgcccactctgcctggaggagcgtgattggatgccaggggtgcctatcatg
gataacctttccaatagcgtgcgacagagcaggaaaacggtgtttgtgctgacagagggc
ttcctgtcgcgtggtgtggttaaaatggccgccctgctggtgcagcagcggctggtggag
gagggtgtggatgccatggtgttgctgctgctgcagccccaggttctgcgacgctcacgc
atcctccacctgcgcagacggctctgcaggcgcagtgttctggagtggccagcaactgcc
tgtccggctgcccagcgctggttctggcacaacctgaagagagccatacggaaagatcag
cgagccacacacgcatcactacacggcacatacttcactgggcggtga
DBGET
integrated database retrieval system
