Oncorhynchus nerka (sockeye salmon): 115102982
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Entry
115102982 CDS
T07952
Name
(RefSeq) ranBP-type and C3HC4-type zinc finger-containing protein 1-like isoform X1
KO
K20894
shank-associated RH domain-interacting protein
Organism
one
Oncorhynchus nerka (sockeye salmon)
Pathway
one04217
Necroptosis
one04621
NOD-like receptor signaling pathway
Brite
KEGG Orthology (KO) [BR:
one00001
]
09140 Cellular Processes
09143 Cell growth and death
04217 Necroptosis
115102982
09150 Organismal Systems
09151 Immune system
04621 NOD-like receptor signaling pathway
115102982
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
one04121
]
115102982
Ubiquitin system [BR:
one04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
LUBAC complex
115102982
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Gene cluster
GFIT
Motif
Pfam:
Sharpin_PH
Zn_ribbon_RanBP
ubiquitin
Motif
Other DBs
NCBI-GeneID:
115102982
NCBI-ProteinID:
XP_029479352
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Position
LG20:complement(48311346..48314983)
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AA seq
440 aa
AA seq
DB search
MALSSGGWGKPPVPAPSQSVHGGPALANCNTVLMSVRVSVCHSGIRPLCLPGAGDEALRL
QLSMDPSKAGEFRLALRDISGSGRSVFIAEFDLRSVQYEVKSPCLHEMRLATPPHDCIRF
NFRCDLEAEQWATVVMSSLREAHRVAVNSSPHPMDDRQQHEAAALEQRSTASLPLTEELC
LELARAIEAGDSQGAAQHASALARQKAVLTIQLSEKCYAEGEISLSVAVEDISSSCCVTV
KVFPHMTVAALKQQVFLEYGFHPRVQRWVIGQCLCTEPRSLASYGVQRDGDTAYLYLVSA
RHARLTRQLFQQDQEGAHLTPSPPTSNGPLSQDWRGYSTLPSRLSHNTQGSTGSGAERLG
TSEIRDALNLETLHLKDKPDKPSKASKTQTEWACPSCTFINKPTRPGCEICSTARPDSRK
HSRIQQEKGRREEQISALSS
NT seq
1323 nt
NT seq
+upstream
nt +downstream
nt
atggcactgagttctggcggttggggtaaaccgcctgtgccagccccgtcccagtctgta
catggcgggcccgcgctggctaactgcaataccgtcttgatgtcggtacgggtgtcggtt
tgccattcgggtattcgaccgctttgcctccctggagctggcgatgaggctctccgtctt
caacttagcatggaccccagcaaagctggagagtttcggctagcactgagggacattagc
ggaagcggccgtagtgtgttcattgcggagtttgacctgcgctctgtgcagtatgaggtc
aagtccccatgccttcacgagatgcgcttggccacgccccctcatgactgtatccgcttc
aacttccgctgtgacctggaggctgagcagtgggccactgtggtgatgtcatcactaaga
gaggcacacagagttgctgtaaatagttccccacatcctatggatgaccgacagcagcac
gaagcagcagctctagaacagcgcagcacagcctccttaccactcactgaggagctgtgc
ttggagcttgcccgggcgatcgaggcaggtgacagccagggcgctgctcagcacgcgtct
gctctagctcgtcagaaggcagtgctcactatccaactgtctgagaagtgttatgccgaa
ggagagataagtttgtctgtggcagtggaagacatctcctcttcctgttgcgtcacagtg
aaagtctttccccacatgactgtcgcagcactcaagcagcaggtgtttttggagtatggc
tttcaccctcgcgtgcagcgctgggtgattggacaatgcctgtgcacagagcctaggtcc
ctggcctcgtatggggtccagagggatggggatacggcctacctttacttggtctcagcc
cgccatgcccgcctcacccgccagctattccagcaggaccaggagggtgcccacctcacc
ccatctccgcctaccagcaacgggcctctttcccaggactggaggggctacagcaccctg
ccctccaggcttagccacaacacccaggggagcaccggaagtggggccgagaggttgggt
acgagcgagatccgagacgccctcaacctggagacgctgcatcttaaagataaacctgat
aagcccagcaaagccagtaaaacacagaccgaatgggcgtgtccctcctgcaccttcatc
aacaagcctacccgaccaggctgtgagatctgcagtacagccagacctgactcacgcaag
cacagccgcatacaacaggagaaaggaagaagagaggagcagatcagtgcattgagcagt
taa
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