Oncorhynchus nerka (sockeye salmon): 115104030
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Entry
115104030 CDS
T07952
Name
(RefSeq) sodium channel protein type 4 subunit alpha B-like isoform X1
KO
K04837
voltage-gated sodium channel type IV alpha
Organism
one
Oncorhynchus nerka (sockeye salmon)
Brite
KEGG Orthology (KO) [BR:
one00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
one04040
]
115104030
Ion channels [BR:
one04040
]
Voltage-gated cation channels
Sodium channel, voltage-gated (Nav)
115104030
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GFIT
Motif
Pfam:
Ion_trans
Na_trans_assoc
IQ_SCN5A_C
PKD_channel
IQ
Zip
GPHH
Motif
Other DBs
NCBI-GeneID:
115104030
NCBI-ProteinID:
XP_029481037
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Position
LG21:16136708..16198634
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AA seq
1912 aa
AA seq
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MVALLPPTGTEVFRRFTLESLAEIERRMAEEAEEQERKKALNIEVAEEDLPKPAVDLEAG
KALPFIYGDPPPELFNTPLEELDPFYKSHKTFIVITKGNTIFRFNAEPACYILTPFSILR
RGSIKILIHSLFSMFIMLTIMSNCVFMTMSDPPAWSKTVEYVFTGIYTFEATIKVFSRGF
CVGDFTFLRDPWNWLDFMVISMAYLTEFVDLGNVSALRTFRVLRALKTITVIPGLKTIVG
ALIQSVKKLADVMILTVFCLAVFALVGLQLFMGNLKQKCVYWPPVEWRLNSTNMDNITMA
FNDTSGFNDVMDYNGTNSSNSTWDFKAYIDDKVNHYFLPGMLDPLLCGNASDAGNCPEGY
TCMKAGGNPNYGYTSYDSFGWAYLALFRLMTQDFWENLFQLTLRSAGKTYMIFFVVVIFL
GSFYLINLILAVVAMAYAEQNEATMAEAKEKEEEYAMIMVQLKERREAEVKERHDRHHEH
HEHAEIAGSQTSLSGRTSKKETGEKTDEEVADDEACTSSSLYSEAIKDSNGGLMISANAN
KVLTDQESAVVLKRASGPKGSKDQLEVVGLQKKTPSSSSVYSQDDMDDLEEELRPCPPCW
YKCSDIFLKWNCCVPWVTFKKWMFFIVMDPFVDLGITICIVLNTMFMAMEHYPMTPEFEE
VLSVGNLVFTGIFTAEMVLKLIAMDPYYYFQVGWNIFDSIIVTMSLVELGLANVEGLSVL
RSFRLMRVFKLAKSWPTLNMLIKIIGNSVGALGNLTLVLAIIVFIFAVVGMQLFGKSYKE
CVCKISLDCELPRWHMHDFFHAFLIIFRVLCGEWIETMWECMEVAGQGMCLVVFMMVMVI
GNLVVLNLFLALLLSSFSGDNLAAPDEDGEMNNLQIATGRITRGIDWAKAYVIQQFCIII
GKQPKEDGDGADGNGGSNGDVDGLPKGSLALKNIISSDNPKADLELTMLDVWIDDVNPSG
FLTNDNLTLDVPIAKMESDDDEDDISEEEEGEGANGDAKEDTELKKPIAPDNASSICSTV
DNPPEVEEEEEEEADTTNPENCWTEKCIGRCPCLDFDITAGKGKTWWNFRKTCFLIVEHN
YFETFIIFMILMSSGALAFEDIYIEQRRTIKIILEYADQVFTYVFIIEMLLKWVAYGFQA
YFTNAWCWLDFLIVDVSLISLTANILGYAELGPIKSLRTLRALRPLRALSRFEGMRVVVN
ALVGAIPSIFNVLLVCLIFWLIFSIMGVNLFAGKYYYCFNTTSEERFSADVVNNKTECYQ
LMEGNDDVRWMNAKVNYDNVGMGYLSLLQIATFKGWMDIMYGAVDSRFVEDQPIYEDNVY
MYIYFVIFIIFGSFFTLNLFIGVIIDNFNQQKKKFGGKDIFMTEEQKKYYNAMKKLGSKK
PQKPIPRPQNKFAGLIFDLITQQFFDIFIMVLICLNMVTMMVETDGQSKEKEDILFLINL
VFIIVFTTECILKLIGLRQYFFSVGWNIFDFVVVILSIVGLLLADLIEKYFVSPTLFRVI
RLARIGRVLRLIRGAKGIRTLLFALMMSLPALFNIGLLLFLIMFIFSIFGMSNFAYVKKE
AGIDDMFNFETFGNSIICLFMITTSAGWDGLLSPILNSRAPDCDPDVENPGTDVRGNCGS
PGLGICFFCSYIIMCFLVVVNMYIAIILENFNVATEESGDPLCEEDFEMFYETWEKFDPD
ASQFIAYDILSEFCDTLKDPLRIPKPNAIKLITMDLPIVPGDKIHCLDILLALTTEVLGE
SAEMDAMKESMEEKFMANNPSKVSYEPITTTLRRKQEEVAAVVIQRAYRKHLLRRSLKLA
SYKYREKKALTKEDEAPPETEGMIAIRMNKLYGSQQSLGVDETVVDMDSHEKRESKELTE
TQPPVETTEEPLPVETTEEPLPVELQNEIILHSAPFVIPASIRISQLKESHV
NT seq
5739 nt
NT seq
+upstream
nt +downstream
nt
atggtcgccctgctccctcccacaggcaccgaagtgtttcgccgcttcacccttgagtcg
ctggcggagatcgagaggcggatggccgaggaagcagaggagcaggagagaaaaaaggcc
ctgaacattgaggtggcagaggaggacctgccaaagccagccgtcgacctggaggccgga
aaggccctgccattcatctacggagacccgccacctgagctgttcaacacgcctctggag
gaactggatcctttctacaaatcacacaaaacctttatcgtcatcaccaaagggaataca
atcttcaggttcaatgctgagcctgcctgctatattctaacacccttcagtattctcagg
agaggatccatcaaaattctcatacattcattatttagcatgttcatcatgttaacaatc
atgtccaactgtgtgttcatgacgatgagtgaccctccggcatggagtaaaactgttgaa
tatgttttcactggtatctatacctttgaggcaacaattaaagtgttttccagaggcttc
tgtgttggagatttcacattccttcgagatccatggaactggctggattttatggtgatc
agcatggcgtacctcacagagttcgttgacctgggcaacgtgtctgccctcaggacgttc
cgtgtgctccgagcccttaaaacaatcaccgtaattcccggtctgaaaaccattgtgggc
gctttgatccagtcagtgaagaagctggctgacgtgatgatcctaacagtgttctgcctg
gctgtgttcgctctggtcggccttcaactgttcatgggaaacctgaagcagaagtgtgtt
tactggccccctgtggaatggcgtttaaactctaccaacatggacaacatcactatggcc
ttcaacgacaccagtggttttaatgacgttatggactacaatggcacaaacagcagcaac
agtacgtgggacttcaaggcatacatcgacgataaagtgaaccattacttccttcctgga
atgttagaccctcttctttgtggaaacgcttctgatgctggaaattgccctgaaggatac
acgtgtatgaaggccggagggaatcccaactatggatacacaagctacgacagttttgga
tgggcctaccttgccctatttcggctcatgacacaggacttctgggaaaatctattccag
ctgactcttcgctcagcagggaaaacctatatgattttctttgtggtggtgatcttcctg
ggctcgttctacctgatcaacctgatcctggctgtggtggccatggcgtatgccgagcag
aacgaggccaccatggccgaggccaaggagaaggaggaggagtatgccatgatcatggtg
cagctgaaggaaaggagagaagcagaggtcaaagagagacatgacaggcatcatgaacac
catgaacatgctgaaattgctggcagtcagacgtcactgtccggtagaacatctaagaaa
gagacaggtgaaaagacagatgaagaggttgctgatgatgaggcgtgtacgtcctccagc
ctttatagcgaggctataaaggactccaatggaggcctaatgatcagtgccaacgccaac
aaggtcctgacagaccaggagtctgctgttgtgttgaagagggccagtggacccaagggg
agtaaggaccagctggaagtagtaggcctccagaagaagacgcccagttcatccagtgtc
tacagccaagatgacatggatgatttggaggaggaactgagaccttgtccgccttgctgg
tacaagtgttcagacatcttcctgaaatggaactgctgtgtgccctgggtgactttcaag
aagtggatgtttttcatagtgatggacccattcgtggacttgggtatcaccatctgcatt
gtactcaacaccatgttcatggccatggagcactaccccatgacgccagagtttgaagaa
gtgctgagtgtggggaacttggtcttcacaggaatcttcacagcagagatggtgctgaag
ctcatcgccatggatccgtactactacttccaggtcgggtggaacatctttgacagcatc
attgtgacaatgagcctggtggagctggggctggccaacgtcgaaggtctatccgtgcta
cgttccttccgcctgatgcgtgttttcaagctggccaaatcctggcccacactcaacatg
ctaatcaagatcatcggtaattcagtgggcgcactgggtaacctcaccctggttctggcc
atcatcgtcttcatcttcgccgtggtgggcatgcagctcttcggcaagagctacaaagag
tgtgtctgcaagatctccttggactgcgagctgcctcgctggcacatgcatgacttcttt
cacgcttttctcatcatcttccgggtgctgtgcggagagtggatcgagaccatgtgggag
tgcatggaggtggccggacagggcatgtgtctcgttgtcttcatgatggtcatggtcatc
ggtaacctagtggtgttgaacctcttcttggccttgctgctgagctcattcagcggtgac
aacctggcggctccagatgaggacggggagatgaacaacctgcagatcgccaccggcagg
atcaccagaggcatcgactgggccaaggcctacgtcatccagcagttctgcattatcata
gggaagcagcctaaggaggatggagacggggctgacggtaatgggggtagtaatggggat
gtggacggcctcccaaagggcagcttggctttgaaaaatataatctccagtgacaaccca
aaggctgatttggagctcacaatgcttgacgtttggatagatgatgttaacccaagtgga
tttcttacaaatgacaatttgaccctggatgtacctattgccaaaatggagtcggatgat
gatgaggatgacatctctgaagaggaagaaggagaaggtgcaaatggagatgctaaagag
gatactgagttaaagaaacctattgcaccggacaatgcctcttcaatatgcagcacagtg
gacaatccccctgaagtggaagaagaggaggaagaagaggcagacaccaccaaccctgag
aactgctggaccgagaaatgcattggacgatgcccgtgccttgattttgacatcaccgcg
ggcaaaggaaagacttggtggaacttcaggaagacatgcttcctcattgtggagcacaac
tactttgagaccttcatcatcttcatgatcctgatgagcagcggcgctttggcctttgaa
gacatatacattgagcagcgcaggaccataaaaataatcctggaatatgctgatcaagtc
ttcacctacgtgttcattattgagatgctcctgaagtgggtggcttacggattccaggcc
tacttcacaaacgcatggtgctggctggacttcctcattgtggatgtgtctttgattagc
ttaacggctaacatcctgggctatgctgaacttggaccgatcaaatctcttcgaacttta
agggccttgcggcccctccgcgccctgtccagatttgagggaatgagggtggtggtgaat
gctctggtaggggctattccttccatcttcaacgtgcttctagtgtgcctcatcttctgg
ctcatcttcagcatcatgggtgtaaacctgtttgctgggaagtactactactgcttcaac
accacgtctgaggagaggttctctgctgacgttgtcaataacaagaccgaatgctatcaa
ctaatggagggtaatgatgacgtgcgctggatgaatgcaaaggtcaactatgacaacgtg
ggcatgggctacctctccctcctgcaaatagcaacgtttaaaggatggatggatataatg
tatggcgctgtggattcacgttttgtggaagaccagcccatatatgaggataatgtttac
atgtacatctactttgtcatattcatcatctttgggtccttcttcaccctgaatctcttc
attggtgtcattatcgacaacttcaaccaacaaaaaaaaaagtttggagggaaagacatt
ttcatgacagaggaacagaagaaatactacaatgccatgaaaaagcttggttccaagaag
ccacagaaacccattcctagaccccagaacaaatttgcaggccttattttcgacctaatc
acccaacaattcttcgacatcttcatcatggtgctgatctgcctcaacatggtaacgatg
atggtggagacggacggccagagcaaggagaaggaggatatactcttcctcatcaacctg
gtgtttatcatcgtcttcaccacagagtgtatcctcaagttgatcggactgcgacaatat
tttttttccgtcggatggaatatttttgattttgtcgtcgtcattctctccatcgttggt
ttactgctggcggacctcatagagaagtattttgtctcacctacccttttccgtgtcata
agactggccaggattggtcgagttctgagactcatccgaggagctaaaggcattcggaca
ctgttgtttgccctgatgatgtcacttcctgctctcttcaacattgggctcctgctcttc
cttatcatgtttatcttctccattttcggaatgtcaaactttgcgtatgtcaagaaggag
gccgggatagacgatatgttcaattttgaaacttttggcaacagtataatttgtctgttc
atgatcacaacctcagccggttgggatggtctcctctcacccattctaaatagtagagct
ccggactgtgacccggacgtggaaaatcctggcacagatgtaagaggcaactgtggcagc
cctggtttgggaatttgttttttctgcagctacatcatcatgtgtttccttgttgtggtc
aacatgtacattgccattatcctcgagaacttcaatgtggccacagaggagagtggcgac
cccctgtgtgaggaagacttcgagatgttctacgagacctgggagaagttcgaccctgac
gcgtcacaattcatcgcctacgacattttgtcggagttctgtgacacgcttaaagacccg
ctcaggatccccaaacccaacgcaatcaagctgatcaccatggaccttcccattgtccct
ggggataagatccactgtctggacatcctgctggcgctgaccacagaggtgctgggagag
tcagcggagatggatgccatgaaagaaagcatggaggagaagttcatggccaacaacccc
tctaaagtgtcatacgagccaatcaccaccaccctgaggcgaaagcaggaggaggtagca
gctgttgttattcagagagcctatcgtaagcatctgctgagacgttcattgaaactcgct
tcctacaagtaccgtgagaagaaagcgttaaccaaggaggacgaagcgccgccagagacg
gagggaatgattgccatcaggatgaacaaactgtatggaagccaacaatccctcggagtg
gatgaaacagttgtagatatggattctcatgaaaaacgggagagcaaagaactgacagag
acacaacctcctgtggagactactgaagagccgctgcctgtggagactactgaagagccg
ctgcctgtggagcttcagaacgagatcatcttgcactctgccccctttgtcatcccggcc
tcaatccgtatctcacagctgaaagagtcccatgtttga
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