Oncorhynchus nerka (sockeye salmon): 115105325
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Entry
115105325 CDS
T07952
Name
(RefSeq) HLA class II histocompatibility antigen, DQ beta 1 chain-like isoform X1
KO
K06752
MHC class II antigen
Organism
one
Oncorhynchus nerka (sockeye salmon)
Pathway
one04145
Phagosome
one04514
Cell adhesion molecules
one04672
Intestinal immune network for IgA production
one05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
one00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04514 Cell adhesion molecules
115105325
09140 Cellular Processes
09141 Transport and catabolism
04145 Phagosome
115105325
09150 Organismal Systems
09151 Immune system
04672 Intestinal immune network for IgA production
115105325
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
115105325
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
one04147
]
115105325
Exosome [BR:
one04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
115105325
Exosomal proteins of epithelial cells
115105325
Exosomal proteins of breast milk
115105325
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Gene cluster
GFIT
Motif
Pfam:
C1-set
C2-set_2
MHC_II_beta
Psg1
Ig_3
Cna_B
C2-set_3
YsaB
Motif
Other DBs
NCBI-GeneID:
115105325
NCBI-ProteinID:
XP_029483107
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All DBs
Position
LG22:complement(38326373..38330559)
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AA seq
260 aa
AA seq
DB search
MYVLNCLSIHLLLLFSSLSEVVDSSDEDFAHDDAWCRFSSRDLHNMEYILEHHFNKIMVA
QYNSTTERWTGYTAWGVISAEKWNEDPDEIPRRRSDMDVLCKPYANRIYNTTEMFMVEPN
VTLRLEGTSSDSSLVCSVHFFYPKHIRVTWLRNGEEVTSDVTSTDVLANGLWSYQIQSYL
KYTPTTGERITCMVEHISQTEPKLHYWDPSLPKSEKNKIVIGVCGLLLGVVFVVAGLIYW
KKSTGRLLDLIGELDYGTCD
NT seq
783 nt
NT seq
+upstream
nt +downstream
nt
atgtatgtgctgaattgcttgtccatccacctgctgctcctcttctcctctctgtctgaa
gtggttgattcctcagatgaagattttgcacacgatgatgcatggtgtcggtttagctcc
agagatttacataatatggagtatattttagagcatcattttaacaagatcatggtggct
cagtacaacagcaccacagagaggtggacaggatacacagcatggggagtgatatctgca
gaaaagtggaatgaggacccagatgagatccccaggaggagatcagatatggatgtgtta
tgcaagccatatgctaatcggatctacaacacaacagagatgtttatggttgagcccaat
gtcacactgaggctagagggaacatccagtgactccagccttgtgtgtagtgtccacttc
ttctaccccaaacacatcagagtgacgtggctgaggaatggggaggaagtgacctcagat
gtgacttccactgacgtactggccaatggactctggagctaccagatacagtcctatttg
aagtacacacccacaactggagagaggatcacctgtatggtggagcacatcagccagact
gagcccaaacttcattactgggacccctccttgcctaagtctgagaagaataagatagtg
atcggtgtctgtgggctgctgctgggggtggtctttgtagtagctggactgatctactgg
aagaaatctactggacggctgttggatcttattggtgaacttgattatgggacttgtgat
tga
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