KEGG   Oncorhynchus nerka (sockeye salmon): 115106633
Entry
115106633         CDS       T07952                                 
Symbol
brca1
Name
(RefSeq) breast cancer type 1 susceptibility protein isoform X1
  KO
K10605  breast cancer type 1 susceptibility protein [EC:2.3.2.27]
Organism
one  Oncorhynchus nerka (sockeye salmon)
Pathway
one03440  Homologous recombination
one03460  Fanconi anemia pathway
one04120  Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:one00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04120 Ubiquitin mediated proteolysis
    115106633 (brca1)
  09124 Replication and repair
   03440 Homologous recombination
    115106633 (brca1)
   03460 Fanconi anemia pathway
    115106633 (brca1)
 09180 Brite Hierarchies
  09181 Protein families: metabolism
   01009 Protein phosphatases and associated proteins [BR:one01009]
    115106633 (brca1)
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:one04121]
    115106633 (brca1)
   03036 Chromosome and associated proteins [BR:one03036]
    115106633 (brca1)
   03400 DNA repair and recombination proteins [BR:one03400]
    115106633 (brca1)
Enzymes [BR:one01000]
 2. Transferases
  2.3  Acyltransferases
   2.3.2  Aminoacyltransferases
    2.3.2.27  RING-type E3 ubiquitin transferase
     115106633 (brca1)
Protein phosphatases and associated proteins [BR:one01009]
 Protein serine/threonine phosphatases
  Phosphoprotein phosphatases (PPPs)
   Protein phosphatase-1
    PP1-interacting proteins (PIPs)
     115106633 (brca1)
Ubiquitin system [BR:one04121]
 Ubiquitin ligases (E3)
  Single Ring-finger type E3
   Other single Ring-finger type E3
    115106633 (brca1)
  Multi subunit type E3
   BRCC complex
    115106633 (brca1)
Chromosome and associated proteins [BR:one03036]
 Eukaryotic type
  Centrosome formation proteins
   Centrosome duplication proteins
    Regulators of centriole replication
     115106633 (brca1)
DNA repair and recombination proteins [BR:one03400]
 Eukaryotic type
  DSBR (double strand breaks repair)
   HR (homologous recombination)
    BRCA1-core complex
     115106633 (brca1)
    BRCA1-A complex
     115106633 (brca1)
    BRCA1-B complex
     115106633 (brca1)
    BRCA1-C complex
     115106633 (brca1)
    BRCA complex
     115106633 (brca1)
   FA (Fanconi anemia) pathway
    Downstream FA components
     115106633 (brca1)
SSDB
Motif
Pfam: BRCT BRCT_2 zf-C3HC4 zf-C3HC4_2 zf-RING_UBOX zf-C3HC4_4 zf-RING_2 RING_XB3-XBAT31 zf-C3HC4_3 zf-Nse zf-RING_5 PTCB-BRCT zf-ANAPC11 zf-RING_4 zf-MIZ U-box RTT107_BRCT_5 zf-rbx1 YicC-like_C zf-RING_10 TRAF3_RING
Other DBs
NCBI-GeneID: 115106633
NCBI-ProteinID: XP_029485408
LinkDB
Position
LG23:complement(15582720..15625981)
AA seq 1554 aa
MNTMMSPKAEDVRQGISVICEILKCPICLELMSTPVSTKCDHQFCKFCIMKLLESSRRKE
AKCPVCKTKITKRSLQETPGFQKLAEGLQNMVQAYEHDTCTNYFTGMSQVRRHMSVTETV
QKKNGHDVSSDDVWASDRADDEDHEFSMSCSSTIAAKDGFATLMGLEDSCPVISDEGFDS
SLGDIPPATEKHTGDSKATSTTEKQKPALEAEIPEVGERAPSRPQKLGKKITTHPQDPPC
CPEKVRNQPVRRSTRNNKRESLTEMIDQNQKKSLEKVSEWLMNNSSTEVNSEKEKNTEGS
YDSVSLAGSCSPSSPIEDNLINKDQSPKREERGKCLEELVFGAVYKRDRRGNRSFSPQNI
AITDPPPPCPAEELQILKKIAKRRMRNKLTPADFVKRPRSEENEESVMDDQPEMTEPQED
SPNEHPKDTEEDKLIDLTGELNSNSSDKPGEELDELPEGDNKENEDVEDSPVFDVPLREP
GRKSNKKMHGRWQDVDGDLQGKVKSENNEQKKPAKKKGENIKVEKSKATKSLVLVGVGEG
GSDSKMPKSRPSGQTEVQIESYPSSEDPGSPIMRRTRRSRRLQLFTEEVQGSNKIGTATS
TKVVVQQSKEAKADTDRDNVACLQNQNTEKAVRKNGCVLDEEMGGIESLDSSEKRLCEMI
ESQKVNQVEESIVEVPSTGSPCHADVACSVTMVPSSISTPEASVSCAVPESVNQSNPVIK
PLDDLRSNVPQETSASQAKCIDLDEDVRNDSELDTEQLLKSFKATKRKSFHLGSPNIKRS
SFWSNKEIKTLTKTQENKHVGTDMEAGNGQGFSRTTECPTVQQESEKGTIFENSCCSDLS
PPSSSLSNISQEKAQRNRKRLRKSILTRPPQDLVDSSNPDTSGKTQKQILSRLSGNSSKS
ALSPNKVTKSQMESPHQAVGSGLLFPAFGASKEDLPDPTPVASKQLRVPKSQQPYKVEGS
MSKSPTELESSHSVGSETAVELNKTCPENMTGNMANTESSLTPDGLLPIIQSVVIQEAQR
TKRCGVVSLHSPIKSTLKRRKAQRLESSSESNCSGEEEELPSLAQIFRPSACPPTAEEEE
ESVTLLKDHAREQGSYREAGDAAEDGQRASSPPMCPSPEWVTTSQASVDLFGTPEEAEGM
AGDTGLTQESSQFSSECIATQQKVAMQEELRRLERMMALVSEALQEKEEEEPTGAKVYPG
APYPPALLQPDRSTVSSGLDLQVTLPCGQGTRKRSASREGAQNIGGNAASPPPGLGDCEG
LGPTPTTPCRTKHEGPGGTGAGRLGRQSGRSLRSSMRARPNQVSPVVRVHSRTNAPSAGL
EVQDTPVVIQPANTHPSTHTPLREPAGVKFVLVASGLGAPEQSMVKKFAKRMGGSVCSEV
TSETTHVIMNTDGDLVCERTLKYFLGIAGRKWVVSFQWISECFKQGTVLNETPFEVRGDV
VNGHDHQGPMRARTTGDTSLLMKDYEICFQGTFTDMTTGQMEWMVELCGATVVQEPLLFT
GELKTRQLIVVQPGSDQSPINYQALQRIATVITRGWVFDSVATYTLQSLDNYRT
NT seq 4665 nt   +upstreamnt  +downstreamnt
atgaacaccatgatgtccccgaaggctgaagatgtcagacaggggatctctgtcatctgt
gagatcttgaagtgtccaatatgtttggaattgatgagcacacctgtgtctactaagtgt
gaccaccagttttgcaagttttgtataatgaagcttttggaaagcagtaggagaaaggag
gccaaatgtccagtttgtaagacaaagatcacaaaaaggagtttgcaggagacccctggg
tttcagaaattggccgagggattgcagaatatggtccaggcctatgaacatgacacctgc
acaaactacttcactggaatgtcccaggtgaggagacatatgagtgtcacagagactgtg
cagaagaaaaacgggcatgatgtctcatctgatgacgtgtgggctagtgaccgtgctgat
gacgaggatcatgagttttcaatgtcctgctcatcgactatagcagccaaggatggcttt
gcaacgctcatgggtcttgaagattcttgccctgtcatttcggacgaggggtttgacagc
agcctaggtgacatacctccagccactgaaaagcataccggtgactctaaagctacctcc
accacagaaaaacagaagccagcattagaggcagaaatacctgaggttggtgaaagagct
ccttcacgacctcaaaagcttggaaaaaagataaccactcatcctcaagatccaccatgc
tgtcctgaaaaggtcagaaaccaacctgtcagacgatccacgaggaataacaaaagagag
tccttgaccgaaatgattgaccagaatcagaagaaaagtctagagaaagtctctgagtgg
ctcatgaataattcctcaacggaagtaaactctgagaaggagaaaaacacagagggctct
tatgactcagtttctttggcaggaagttgttccccctcctcacccatagaggataacctc
ataaataaggaccagagtccaaagagagaagagcgtggcaaatgtcttgaggagctggta
tttggggctgtttacaaacgggatcgaagagggaatcgcagtttttcaccacagaatata
gcgatcacagaccctccaccaccctgtccagctgaggaactccagatcctgaagaagatt
gccaaaaggaggatgagaaataaactgacacctgctgactttgtcaagagaccaagatct
gaggagaatgaagagagtgttatggatgaccaaccagagatgacagaaccacaagaggat
tctcccaatgaacacccaaaagatactgaagaagataagttgattgacctgactggggag
ctgaattctaatagctctgacaagccaggagaagagcttgatgagttgccggaaggtgac
aacaaagagaatgaagatgtagaggacagtcctgtgtttgatgtgccactacgggaacct
gggaggaagtcaaataaaaagatgcacggtaggtggcaggacgttgacggggatttacaa
gggaaagtaaagtcggagaataacgagcaaaaaaagcctgccaagaaaaaaggggaaaac
atcaaggtggagaagagcaaggcaaccaaatccttagtccttgtgggtgtcggagagggt
ggaagtgactctaagatgcctaagagcagaccgtcaggccagaccgaggttcagattgag
agttaccctagcagtgaggatccaggaagcccaatcatgaggagaaccaggaggagtcgg
aggcttcagcttttcacggaggaagtacaagggagtaacaagatcggcactgcaacatcc
acaaaggttgtcgttcagcaatcaaaggaggcgaaagctgacaccgacagggataatgtg
gcgtgtttgcagaaccaaaatacagaaaaggctgtcaggaaaaacggatgtgttttagat
gaagaaatgggaggtattgagagcttggactctagcgagaaaagattgtgtgaaatgatt
gagtcacagaaagtgaaccaagttgaggagtctattgtcgaagtcccaagtacaggaagt
ccttgtcacgctgatgttgcttgttcagtgactatggtaccaagttcaattagtacccct
gaggcaagtgtctcatgtgccgtgcctgagagtgtaaaccaaagtaatccggttatcaaa
ccattagatgacttgagatcaaatgtaccacaagagacgtcagccagccaggccaaatgc
attgatctggatgaggatgtccggaatgacagtgagctggacactgagcaactgctgaag
agcttcaaagccaccaaaaggaagtccttccaccttggtagtccaaatatcaagaggagt
tccttctggtccaacaaggagattaaaactcttacaaagactcaagagaacaaacatgtt
ggcacagatatggaagcaggaaatgggcagggattttcaaggacaacggagtgtcccaca
gtccaacaggaatctgagaaagggacaatattcgaaaattcttgctgtagtgatttgagc
ccaccttcaagttccctcagcaatatttcacaagaaaaggcgcagaggaatcgtaaaagg
ctcagaaaatccattcttaccagaccacctcaggatttagtggattcttcgaaccctgat
accagtgggaagacccagaaacagattctgtccaggctttctggcaacagctcaaaaagt
gccctcagtcctaacaaagtcacaaaaagccaaatggaatctccccaccaagctgtgggt
tctggtctgctctttccagcttttggcgcctctaaggaagatctaccagatccgacacct
gtagcttcaaagcaacttagagtccctaaaagtcagcagccatacaaagtggagggcagc
atgagtaaaagtccaacagaactggagagtagccacagtgttggatcagagacggcagtg
gagttaaacaaaacgtgtccagagaacatgactggaaacatggccaatacagagtcctcc
ttgactccagatggcctccttccaattatccaatcagtagttatccaagaggcgcagagg
actaaaagatgtggtgtggtcagcttgcactctcccatcaagagcaccctaaagcggagg
aaggctcagagactggagtcttcctcggagtccaactgcagtggggaggaagaggaactg
ccttcccttgcgcaaattttcagaccttcggcttgtccaccaaccgctgaggaggaggag
gaatcagtcacattgctcaaagaccatgccagggaacaaggaagctacagggaggctggt
gatgcagctgaagatgggcagcgagcgagcagtcctcccatgtgccccagtcccgaatgg
gtcaccaccagccaggcatctgtggatctgtttggaacaccagaagaagctgaaggaatg
gcaggtgacactggcctgacacaggaatcatcacaattttcaagcgagtgtattgccact
cagcaaaaggttgcgatgcaggaggagctgcggaggctggagagaatgatggcgttggta
tctgaagcgctccaggagaaggaggaggaggagcccactggggccaaagtctaccccggg
gccccatatcccccagcgctgcttcaaccagacaggtccacagtctcctcaggccttgat
ctccaggtgaccctgccgtgtggccagggcaccaggaagagatctgccagcagggaaggt
gcccaaaacattgggggaaatgcagcctcaccgccccctggtcttggagactgtgagggc
cttgggcccacccccaccacgccctgccgcaccaaacatgagggacctggagggactgga
gcagggcggcttggcagacagtcaggacggagcctaaggagcagcatgagagcgaggccc
aaccaggtgtcgccagtggtcagagtgcacagcaggaccaatgctccctcagctgggctg
gaggtccaggataccccggtggtcatccagcctgccaacacacacccatcaacacacact
ccactgcgggaacccgctggggtcaagtttgtgctggttgcatcaggactcggtgcacct
gaacagtcgatggtgaaaaagtttgccaagaggatgggaggcagtgtgtgttcagaagtg
acgtccgagaccacccatgtcatcatgaacacagatggtgatctggtgtgtgagcgcacg
ctcaagtacttcctgggcatcgcaggcaggaagtgggtggtgagcttccagtggatttcc
gagtgtttcaaacaagggacagtcttaaatgagacgccatttgaggtgcgaggagacgtt
gtgaacggacatgatcaccaagggcccatgagagcacggaccacaggggacacaagtctg
ctgatgaaggattacgagatctgtttccaaggcactttcaccgatatgaccactggtcag
atggagtggatggtggagctttgcggcgcaacagtggttcaagagcctcttctcttcact
ggtgaactgaaaactcgtcagctaatagtggtacaaccaggctcggaccaatcaccaata
aactaccaagccctccagaggatagccacggtcatcacccgtggttgggtatttgattcc
gtggcaacctacacccttcaaagcctcgacaactacagaacgtaa

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