Oncorhynchus nerka (sockeye salmon): 115106633
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Entry
115106633 CDS
T07952
Symbol
brca1
Name
(RefSeq) breast cancer type 1 susceptibility protein isoform X1
KO
K10605
breast cancer type 1 susceptibility protein [EC:
2.3.2.27
]
Organism
one
Oncorhynchus nerka (sockeye salmon)
Pathway
one03440
Homologous recombination
one03460
Fanconi anemia pathway
one04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
one00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
115106633 (brca1)
09124 Replication and repair
03440 Homologous recombination
115106633 (brca1)
03460 Fanconi anemia pathway
115106633 (brca1)
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
one01009
]
115106633 (brca1)
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
one04121
]
115106633 (brca1)
03036 Chromosome and associated proteins [BR:
one03036
]
115106633 (brca1)
03400 DNA repair and recombination proteins [BR:
one03400
]
115106633 (brca1)
Enzymes [BR:
one01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
115106633 (brca1)
Protein phosphatases and associated proteins [BR:
one01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
115106633 (brca1)
Ubiquitin system [BR:
one04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
115106633 (brca1)
Multi subunit type E3
BRCC complex
115106633 (brca1)
Chromosome and associated proteins [BR:
one03036
]
Eukaryotic type
Centrosome formation proteins
Centrosome duplication proteins
Regulators of centriole replication
115106633 (brca1)
DNA repair and recombination proteins [BR:
one03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-core complex
115106633 (brca1)
BRCA1-A complex
115106633 (brca1)
BRCA1-B complex
115106633 (brca1)
BRCA1-C complex
115106633 (brca1)
BRCA complex
115106633 (brca1)
FA (Fanconi anemia) pathway
Downstream FA components
115106633 (brca1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BRCT
BRCT_2
zf-C3HC4
zf-C3HC4_2
zf-RING_UBOX
zf-C3HC4_4
zf-RING_2
RING_XB3-XBAT31
zf-C3HC4_3
zf-Nse
zf-RING_5
PTCB-BRCT
zf-ANAPC11
zf-RING_4
zf-MIZ
U-box
RTT107_BRCT_5
zf-rbx1
YicC-like_C
zf-RING_10
TRAF3_RING
Motif
Other DBs
NCBI-GeneID:
115106633
NCBI-ProteinID:
XP_029485408
LinkDB
All DBs
Position
LG23:complement(15582720..15625981)
Genome browser
AA seq
1554 aa
AA seq
DB search
MNTMMSPKAEDVRQGISVICEILKCPICLELMSTPVSTKCDHQFCKFCIMKLLESSRRKE
AKCPVCKTKITKRSLQETPGFQKLAEGLQNMVQAYEHDTCTNYFTGMSQVRRHMSVTETV
QKKNGHDVSSDDVWASDRADDEDHEFSMSCSSTIAAKDGFATLMGLEDSCPVISDEGFDS
SLGDIPPATEKHTGDSKATSTTEKQKPALEAEIPEVGERAPSRPQKLGKKITTHPQDPPC
CPEKVRNQPVRRSTRNNKRESLTEMIDQNQKKSLEKVSEWLMNNSSTEVNSEKEKNTEGS
YDSVSLAGSCSPSSPIEDNLINKDQSPKREERGKCLEELVFGAVYKRDRRGNRSFSPQNI
AITDPPPPCPAEELQILKKIAKRRMRNKLTPADFVKRPRSEENEESVMDDQPEMTEPQED
SPNEHPKDTEEDKLIDLTGELNSNSSDKPGEELDELPEGDNKENEDVEDSPVFDVPLREP
GRKSNKKMHGRWQDVDGDLQGKVKSENNEQKKPAKKKGENIKVEKSKATKSLVLVGVGEG
GSDSKMPKSRPSGQTEVQIESYPSSEDPGSPIMRRTRRSRRLQLFTEEVQGSNKIGTATS
TKVVVQQSKEAKADTDRDNVACLQNQNTEKAVRKNGCVLDEEMGGIESLDSSEKRLCEMI
ESQKVNQVEESIVEVPSTGSPCHADVACSVTMVPSSISTPEASVSCAVPESVNQSNPVIK
PLDDLRSNVPQETSASQAKCIDLDEDVRNDSELDTEQLLKSFKATKRKSFHLGSPNIKRS
SFWSNKEIKTLTKTQENKHVGTDMEAGNGQGFSRTTECPTVQQESEKGTIFENSCCSDLS
PPSSSLSNISQEKAQRNRKRLRKSILTRPPQDLVDSSNPDTSGKTQKQILSRLSGNSSKS
ALSPNKVTKSQMESPHQAVGSGLLFPAFGASKEDLPDPTPVASKQLRVPKSQQPYKVEGS
MSKSPTELESSHSVGSETAVELNKTCPENMTGNMANTESSLTPDGLLPIIQSVVIQEAQR
TKRCGVVSLHSPIKSTLKRRKAQRLESSSESNCSGEEEELPSLAQIFRPSACPPTAEEEE
ESVTLLKDHAREQGSYREAGDAAEDGQRASSPPMCPSPEWVTTSQASVDLFGTPEEAEGM
AGDTGLTQESSQFSSECIATQQKVAMQEELRRLERMMALVSEALQEKEEEEPTGAKVYPG
APYPPALLQPDRSTVSSGLDLQVTLPCGQGTRKRSASREGAQNIGGNAASPPPGLGDCEG
LGPTPTTPCRTKHEGPGGTGAGRLGRQSGRSLRSSMRARPNQVSPVVRVHSRTNAPSAGL
EVQDTPVVIQPANTHPSTHTPLREPAGVKFVLVASGLGAPEQSMVKKFAKRMGGSVCSEV
TSETTHVIMNTDGDLVCERTLKYFLGIAGRKWVVSFQWISECFKQGTVLNETPFEVRGDV
VNGHDHQGPMRARTTGDTSLLMKDYEICFQGTFTDMTTGQMEWMVELCGATVVQEPLLFT
GELKTRQLIVVQPGSDQSPINYQALQRIATVITRGWVFDSVATYTLQSLDNYRT
NT seq
4665 nt
NT seq
+upstream
nt +downstream
nt
atgaacaccatgatgtccccgaaggctgaagatgtcagacaggggatctctgtcatctgt
gagatcttgaagtgtccaatatgtttggaattgatgagcacacctgtgtctactaagtgt
gaccaccagttttgcaagttttgtataatgaagcttttggaaagcagtaggagaaaggag
gccaaatgtccagtttgtaagacaaagatcacaaaaaggagtttgcaggagacccctggg
tttcagaaattggccgagggattgcagaatatggtccaggcctatgaacatgacacctgc
acaaactacttcactggaatgtcccaggtgaggagacatatgagtgtcacagagactgtg
cagaagaaaaacgggcatgatgtctcatctgatgacgtgtgggctagtgaccgtgctgat
gacgaggatcatgagttttcaatgtcctgctcatcgactatagcagccaaggatggcttt
gcaacgctcatgggtcttgaagattcttgccctgtcatttcggacgaggggtttgacagc
agcctaggtgacatacctccagccactgaaaagcataccggtgactctaaagctacctcc
accacagaaaaacagaagccagcattagaggcagaaatacctgaggttggtgaaagagct
ccttcacgacctcaaaagcttggaaaaaagataaccactcatcctcaagatccaccatgc
tgtcctgaaaaggtcagaaaccaacctgtcagacgatccacgaggaataacaaaagagag
tccttgaccgaaatgattgaccagaatcagaagaaaagtctagagaaagtctctgagtgg
ctcatgaataattcctcaacggaagtaaactctgagaaggagaaaaacacagagggctct
tatgactcagtttctttggcaggaagttgttccccctcctcacccatagaggataacctc
ataaataaggaccagagtccaaagagagaagagcgtggcaaatgtcttgaggagctggta
tttggggctgtttacaaacgggatcgaagagggaatcgcagtttttcaccacagaatata
gcgatcacagaccctccaccaccctgtccagctgaggaactccagatcctgaagaagatt
gccaaaaggaggatgagaaataaactgacacctgctgactttgtcaagagaccaagatct
gaggagaatgaagagagtgttatggatgaccaaccagagatgacagaaccacaagaggat
tctcccaatgaacacccaaaagatactgaagaagataagttgattgacctgactggggag
ctgaattctaatagctctgacaagccaggagaagagcttgatgagttgccggaaggtgac
aacaaagagaatgaagatgtagaggacagtcctgtgtttgatgtgccactacgggaacct
gggaggaagtcaaataaaaagatgcacggtaggtggcaggacgttgacggggatttacaa
gggaaagtaaagtcggagaataacgagcaaaaaaagcctgccaagaaaaaaggggaaaac
atcaaggtggagaagagcaaggcaaccaaatccttagtccttgtgggtgtcggagagggt
ggaagtgactctaagatgcctaagagcagaccgtcaggccagaccgaggttcagattgag
agttaccctagcagtgaggatccaggaagcccaatcatgaggagaaccaggaggagtcgg
aggcttcagcttttcacggaggaagtacaagggagtaacaagatcggcactgcaacatcc
acaaaggttgtcgttcagcaatcaaaggaggcgaaagctgacaccgacagggataatgtg
gcgtgtttgcagaaccaaaatacagaaaaggctgtcaggaaaaacggatgtgttttagat
gaagaaatgggaggtattgagagcttggactctagcgagaaaagattgtgtgaaatgatt
gagtcacagaaagtgaaccaagttgaggagtctattgtcgaagtcccaagtacaggaagt
ccttgtcacgctgatgttgcttgttcagtgactatggtaccaagttcaattagtacccct
gaggcaagtgtctcatgtgccgtgcctgagagtgtaaaccaaagtaatccggttatcaaa
ccattagatgacttgagatcaaatgtaccacaagagacgtcagccagccaggccaaatgc
attgatctggatgaggatgtccggaatgacagtgagctggacactgagcaactgctgaag
agcttcaaagccaccaaaaggaagtccttccaccttggtagtccaaatatcaagaggagt
tccttctggtccaacaaggagattaaaactcttacaaagactcaagagaacaaacatgtt
ggcacagatatggaagcaggaaatgggcagggattttcaaggacaacggagtgtcccaca
gtccaacaggaatctgagaaagggacaatattcgaaaattcttgctgtagtgatttgagc
ccaccttcaagttccctcagcaatatttcacaagaaaaggcgcagaggaatcgtaaaagg
ctcagaaaatccattcttaccagaccacctcaggatttagtggattcttcgaaccctgat
accagtgggaagacccagaaacagattctgtccaggctttctggcaacagctcaaaaagt
gccctcagtcctaacaaagtcacaaaaagccaaatggaatctccccaccaagctgtgggt
tctggtctgctctttccagcttttggcgcctctaaggaagatctaccagatccgacacct
gtagcttcaaagcaacttagagtccctaaaagtcagcagccatacaaagtggagggcagc
atgagtaaaagtccaacagaactggagagtagccacagtgttggatcagagacggcagtg
gagttaaacaaaacgtgtccagagaacatgactggaaacatggccaatacagagtcctcc
ttgactccagatggcctccttccaattatccaatcagtagttatccaagaggcgcagagg
actaaaagatgtggtgtggtcagcttgcactctcccatcaagagcaccctaaagcggagg
aaggctcagagactggagtcttcctcggagtccaactgcagtggggaggaagaggaactg
ccttcccttgcgcaaattttcagaccttcggcttgtccaccaaccgctgaggaggaggag
gaatcagtcacattgctcaaagaccatgccagggaacaaggaagctacagggaggctggt
gatgcagctgaagatgggcagcgagcgagcagtcctcccatgtgccccagtcccgaatgg
gtcaccaccagccaggcatctgtggatctgtttggaacaccagaagaagctgaaggaatg
gcaggtgacactggcctgacacaggaatcatcacaattttcaagcgagtgtattgccact
cagcaaaaggttgcgatgcaggaggagctgcggaggctggagagaatgatggcgttggta
tctgaagcgctccaggagaaggaggaggaggagcccactggggccaaagtctaccccggg
gccccatatcccccagcgctgcttcaaccagacaggtccacagtctcctcaggccttgat
ctccaggtgaccctgccgtgtggccagggcaccaggaagagatctgccagcagggaaggt
gcccaaaacattgggggaaatgcagcctcaccgccccctggtcttggagactgtgagggc
cttgggcccacccccaccacgccctgccgcaccaaacatgagggacctggagggactgga
gcagggcggcttggcagacagtcaggacggagcctaaggagcagcatgagagcgaggccc
aaccaggtgtcgccagtggtcagagtgcacagcaggaccaatgctccctcagctgggctg
gaggtccaggataccccggtggtcatccagcctgccaacacacacccatcaacacacact
ccactgcgggaacccgctggggtcaagtttgtgctggttgcatcaggactcggtgcacct
gaacagtcgatggtgaaaaagtttgccaagaggatgggaggcagtgtgtgttcagaagtg
acgtccgagaccacccatgtcatcatgaacacagatggtgatctggtgtgtgagcgcacg
ctcaagtacttcctgggcatcgcaggcaggaagtgggtggtgagcttccagtggatttcc
gagtgtttcaaacaagggacagtcttaaatgagacgccatttgaggtgcgaggagacgtt
gtgaacggacatgatcaccaagggcccatgagagcacggaccacaggggacacaagtctg
ctgatgaaggattacgagatctgtttccaaggcactttcaccgatatgaccactggtcag
atggagtggatggtggagctttgcggcgcaacagtggttcaagagcctcttctcttcact
ggtgaactgaaaactcgtcagctaatagtggtacaaccaggctcggaccaatcaccaata
aactaccaagccctccagaggatagccacggtcatcacccgtggttgggtatttgattcc
gtggcaacctacacccttcaaagcctcgacaactacagaacgtaa
DBGET
integrated database retrieval system