Oncorhynchus nerka (sockeye salmon): 115106895
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Entry
115106895 CDS
T07952
Name
(RefSeq) interferon regulatory factor 5-like
KO
K09446
interferon regulatory factor 5
Organism
one
Oncorhynchus nerka (sockeye salmon)
Pathway
one04620
Toll-like receptor signaling pathway
Brite
KEGG Orthology (KO) [BR:
one00001
]
09150 Organismal Systems
09151 Immune system
04620 Toll-like receptor signaling pathway
115106895
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
one03000
]
115106895
Transcription factors [BR:
one03000
]
Eukaryotic type
Helix-turn-helix
Tryptophan clusters interferon-regulating factors
115106895
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
IRF-3
IRF
Motif
Other DBs
NCBI-GeneID:
115106895
NCBI-ProteinID:
XP_029485949
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All DBs
Position
LG23:complement(32460676..32468827)
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AA seq
533 aa
AA seq
DB search
MMSVQPRRIRLKPWLLAQVNSGRYPGLQWLSPDHRIFQIPWRHATRHLPTSEEENTIFKA
WALETGKYQEGLDEPDPAKWKANLRCALNKSREFKLKYDGTKETPVQPYKIYEVCDQPCN
GDTVDEDEEEEMPNIVDLSIDPRISDPRSYQAFPTSHGIDVPFSSPLNDRYGTSHHTPMY
PSPNMHSNRNGANTMAADLPQPTMAPPEFSSHVPLVVKLEHGVFVHHGPAEPSNGLGMGG
GSMQPPMVTEMATMVPSAASAAPVAPHPGVAPMEAMSGVQNQEEGQAVPPYKYDLLNSLP
LTDLDMKFQYRGRKMGSLTVSNPQGCRLYYGHLEPTPEQVDLFGPVNLNQVLFPGSADIQ
NEKQRFYTEHLLDVMDRGLILEIWEQDIYAIRLCQCKVYWSGPGVDEQGPPNPMERERKY
KVFSLNNFLHGLILFQKGETPTPPPFELCFCFGEDWPDQRKPKEKKLIVVQVVPVVARIL
TEMFSGDLSWSTDSIRLQISNPDLKDQTVEQFKELQRLLQSQHGLGPWATNGP
NT seq
1602 nt
NT seq
+upstream
nt +downstream
nt
atgatgagtgtgcagcctcggaggatccgcctgaagccctggctgttagcccaggtgaac
agcgggaggtaccccggcttgcagtggctcagcccggaccaccggatcttccagatcccc
tggaggcacgccacaagacacttgcccacctctgaggaagagaacaccatcttcaaggcc
tgggctctggagacagggaagtaccaggagggtctggatgagccggaccctgccaagtgg
aaggccaacctgcgctgtgccctcaacaagagccgggagttcaaactgaaatacgacggc
accaaggagacacccgtccagccctacaagatctacgaggtctgtgaccagccctgcaat
ggagacacagttgatgaagatgaggaggaggagatgccgaatattgttgacctctccatt
gaccccagaattagtgacccacgcagttatcaggcattccctacctcacatgggatagac
gttcccttcagctcccccctcaatgacagatatggcacctcccaccacacccctatgtac
cccagtcccaacatgcactccaatcgcaacggggccaataccatggcagcggatctccct
cagccaaccatggctcccccagagttttcttcccacgttccattggtggtgaagttggaa
catggggtctttgtgcaccatggacccgcagaaccctccaacggcctggggatgggtgga
gggagcatgcagcctcctatggtcactgagatggccaccatggttccttctgctgcatct
gcggctccggttgcccctcacccaggtgtcgccccaatggaggccatgtccggagtccag
aaccaggaagaagggcaggcggtgccaccctacaaatatgacctgctgaacagcctgccg
ttgactgacctagacatgaaattccagtatcggggtcgcaagatgggctccctgacagtg
agtaacccccagggctgccggctgtactacggccacttggagcccaccccggagcaggtg
gacctgttcggccctgtcaacctcaaccaagttctcttccctggctcggccgacatccag
aacgagaagcagcggttctacacagagcacctgctggatgtgatggaccgaggcctgatc
ctggagatctgggagcaggatatatacgctatcaggttgtgtcagtgcaaggtgtattgg
tctgggccgggcgttgacgagcaggggcctcccaaccctatggagagggagaggaagtac
aaagtgttcagcctcaataacttcctgcacgggctcatcttgttccagaaaggtgaaact
cccaccccacccccgtttgagctctgcttctgcttcggggaggactggccagaccaacgg
aaacccaaggagaagaagctcatcgttgtgcaggtggtcccggtggtggcgcggatccta
acagagatgttttctggagatctgtcctggtccacagacagcatccgactgcagatctcc
aacccagacctgaaggaccagacggtggagcagttcaaggagctccagaggcttctccag
agtcagcacggcctggggccctgggccaccaacggaccctga
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