Oncorhynchus nerka (sockeye salmon): 115107136
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Entry
115107136 CDS
T07952
Symbol
apaf1
Name
(RefSeq) apoptotic protease-activating factor 1 isoform X1
KO
K02084
apoptotic protease-activating factor
Organism
one
Oncorhynchus nerka (sockeye salmon)
Pathway
one04115
p53 signaling pathway
one04210
Apoptosis
one05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
one00001
]
09140 Cellular Processes
09143 Cell growth and death
04210 Apoptosis
115107136 (apaf1)
04115 p53 signaling pathway
115107136 (apaf1)
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
115107136 (apaf1)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
APAF1_C
Beta-prop_WDR5
Beta-prop_WDR3_1st
WD40
Beta-prop_THOC3
WD40_WDHD1_1st
WHD_APAF1
WD40_Prp19
WD40_CDC20-Fz
NB-ARC
Beta-prop_EML_2
Beta-prop_WDR3_2nd
WDR55
WD40_MABP1-WDR62_2nd
Beta-prop_TEP1_2nd
Beta-prop_WDR36-Utp21_2nd
EIF3I
CARD
Beta-prop_WDR36-Utp21_1st
Beta-prop_CAF1B_HIR1
Beta-prop_EML
WD40_Gbeta
ANAPC4_WD40
Beta-prop_WDR90_POC16_2nd
WDR90_beta-prop_4th
Beta-prop_Aladin
Beta-prop_RIG_2nd
Beta-prop_WDR75_1st
Beta-prop_WDR19_1st
WD40_MABP1-WDR62_1st
Beta-prop_WDR41
Beta-prop_IFT122_1st
NBCH_WD40
RMC1_N
Beta-prop_EIPR1
Ge1_WD40
Beta-prop_WDR35_TULP_N
Beta-prop_Nup120_160
CARD_2
Beta-prop_TEP1_C
Beta-prop_HPS5
Beta-prop_IFT140_1st
AAA_16
PROPPIN
Tricorn_2nd
NACHT
WD40_RFWD3
Beta-prop_VPS8
AAA_22
WD40_like
DUF5046
DUF2677
Motif
Other DBs
NCBI-GeneID:
115107136
NCBI-ProteinID:
XP_029486419
LinkDB
All DBs
Position
LG23:complement(42910679..42928640)
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AA seq
1023 aa
AA seq
DB search
MAMMEEGARSCLLQSRSSLEQDIRASYLMDHMISDGVLTGDEEDRIRSKPTRKEQAAALL
ELLLRKDNQAYISFYNALVRESYGDLASLLHNSLPLVSPEAEKSFSDGGTHYVQAVLSEG
GVPQRPVVFVSRPALMNRVREKLYRLQKEPGWVTVFGMAGSGKSVLAAEAVRDHALITEC
FPGGVHWLSVGQLDRSDLLVRIQSLCFRLEQQSQEKDPSSSLHRPPGSLEEAKERLRFLM
LRCYPRSLLILDDIWDSSVLKAFDIQCRVLLTTRDRSLADCVSGSKSEVAVESGLEEDQA
LEILALYVNGKPQRLPEQARSIVRECKGSPLVVSLIGALLREFPDRWAYYLHTLQQKKFK
RIRKSSSYDYDALDQAMAASIQVLSEEHRERYIDLTVLEKDVKVPAKVLSVLWDLEPEEV
EDILQDFVNKSLLFRDCHHRPYLYYLHDLQLDFLAEMNRSGLESLHTKVVRQYQQRYSHG
PPTSGDEECLYWFRFLTYHMAKANLTQELCSLMFSLDWVRTKAQIMGPAHLINDYVEYGA
ILDKENSELRGHFQEFLSLNGHQLEQRPFPDVVQLALSQPDSSEVYLQALLQAQERATRG
GLYLDWVNKSSLKSLSRLVVQAHQGSIYSACFSHDGTKIASCGSSKTLRVFKSTSGEKLL
EIQAHDDEVLCCAFSPDDRLLATCSSDRKVKVWNVECGTLMRMFEDEHEEQVNHCQFTNT
RRRLLLATCSNDKFMNTKLWNINKPSSQNTMFGHLEPVNHCCFSPDDAYLSTSSSDGTLK
LWEVSSANEWKSIDVADTFPEQREQTEVMVKCSTWSADGRTIICAARNAVFVFDVETAAM
LLEIRTSRLSTVQYCHACPSSNLLAIALSHYAVELWDIETSKKMADCSGHLSWVHGVQFS
PDGSLLLSCSDDQTVRVWETKKVHTSSAVCLKRDSDVLFNNGDITVVAADNRNRLQVRNG
RTGAVMFQSENQESRIRCTAICSQTSAVGLGREDGTIQVNTHIGTHFYPHTHTRKQKSSR
TQK
NT seq
3072 nt
NT seq
+upstream
nt +downstream
nt
atggcgatgatggaggaaggggcacggagctgcctgcttcagtcacgctccagcctggag
caggacatcagggcttcctacctgatggatcacatgatcagtgacggtgtgctgacgggg
gacgaggaggacaggatcaggagcaagcccaccaggaaagagcaggcggcggccctgctg
gagctgctcctgaggaaggataaccaggcctacatctccttctacaacgccctggtccgc
gagagctacggagacctggccagcctgctccacaacagcctgcccctggtctcccctgag
gctgagaagagcttctcagacggtggcacccactatgtccaggcggtgctgagtgagggc
ggcgtgccccagagacccgtggtgtttgtgagccggccagccctgatgaaccgggtcagg
gagaagctctaccgcttgcagaaggagcccggctgggtcactgtgttcggcatggccggc
tccggcaagtctgtcttggctgcggaggcagtccgagaccacgcactcatcacagagtgt
tttccgggaggagtccactggctgtccgtaggccagctggaccggtctgatctgctggtt
aggattcagtcactgtgtttccgtctggagcagcagagccaggagaaagacccctcatcc
tcactccaccggcctcctggctctctggaggaggccaaggagcgactacgcttcctcatg
ctccgttgttaccccaggtcgttgctgatactggatgacatctgggacagctcggtgctc
aaggcctttgacatccagtgtcgagtactgctcaccacccgagacagaagcctagctgac
tgtgtcagcggttctaagtctgaggtggcagtggagagtggactggaggaggatcaggcc
ttggagatcctcgccctgtatgtcaacgggaaaccccagagactcccagaacaggcccgc
agcattgtcagagagtgcaaaggctcccccttggtggtgtccctaatcggggccctgctg
cgggagttcccggaccgctgggcctactacctgcacacgctccagcagaagaagttcaag
cgtatccgtaagtcgtcttcgtatgactacgatgcccttgaccaggccatggctgccagc
atccaggtcctctctgaggaacacagggagcggtacattgacctcaccgtgctggagaag
gacgtcaaagtacctgccaaggttctgtcggttctgtgggatctagaaccggaggaggtg
gaggacattctccaggactttgtgaacaagtccctactgttccgtgactgtcaccaccgg
ccctacctctactacctccacgacctccagctggacttcctggctgagatgaaccgctct
ggcctagagagccttcacaccaaggtggtgcgtcagtaccagcagcgctacagccatggt
ccccccacctcaggagatgaagagtgcctctactggttcagattcctcacctaccacatg
gccaaggccaacctcacacaggagttgtgctctctgatgttctctctggactgggtcaga
actaaagctcagattatgggaccggctcatctcatcaatgactatgtggagtacggcgcc
atactggacaaagagaacagcgagttgcggggccacttccaggagttcctgtctctgaac
ggccaccagttggagcagcgtccgttccctgacgtagtgcagctggccctgtcccagcca
gactcctctgaggtgtacctccaggccctgctgcaggcgcaggagagggccaccagaggg
ggactctaccttgactgggtgaacaaaagtagtctgaagagcctgtctcgtctggtggtc
caggcccaccagggatccatctactctgcctgcttctcccacgacggcaccaagatcgcc
tcctgtggctccagcaagacactgcgagtgtttaagagcacgtctggggagaagctgctg
gagatccaggcccacgacgatgaggtgctctgctgcgccttctccccggatgaccgtctc
ctagcaacctgctccagtgataggaaggtcaaggtttggaatgtggagtgtgggactctg
atgaggatgtttgaggacgaacacgaggagcaggtcaaccactgtcagttcaccaacaca
cgccgacgcctcctactggccacctgttccaacgacaagttcatgaacactaagctgtgg
aacatcaataaaccctcctcccagaacaccatgtttggtcatttggagcctgtcaatcac
tgctgtttctcccctgatgacgcctacctctccacctcttccagcgacggaaccctgaag
ctgtgggaggtgtcctcggctaatgagtggaagtccatagacgtggcggacacgttcccg
gagcagagagagcagacggaggtcatggtgaagtgcagcacctggtcagcagacggcagg
accatcatctgtgctgccaggaacgcagtctttgtgtttgatgtagagacggcggccatg
ttgttggagatccggaccagtcgtctgagcacggtgcagtactgtcacgcctgtcccagc
agcaacctgttggccatcgcactgtcacactatgctgtggagctgtgggacatagagacc
agtaagaagatggctgactgtagtggtcatctgagctgggtccatggagtccagttctcc
cctgacggatctctactgctctcctgttctgacgaccagaccgtcagggtgtgggagact
aaaaaagtccacacctcatcagctgtctgtctgaagagggattctgacgtgctctttaac
aacggtgacattaccgtggtcgccgccgacaaccgcaacagactgcaggtgaggaatggg
aggaccggagcggtgatgttccagtcagagaaccaggagtctcgtatccgctgcactgcg
atctgctcacagacctcagccgtggggctgggacgagaggatgggacgatacaggtaaac
acacacataggtacacacttttaccctcacacacataccagaaagcaaaaatcttcaagg
acacaaaagtag
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integrated database retrieval system
