Oncorhynchus nerka (sockeye salmon): 115110132
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Entry
115110132 CDS
T07952
Name
(RefSeq) sodium channel protein type 4 subunit alpha B-like
KO
K04837
voltage-gated sodium channel type IV alpha
Organism
one
Oncorhynchus nerka (sockeye salmon)
Brite
KEGG Orthology (KO) [BR:
one00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
one04040
]
115110132
Ion channels [BR:
one04040
]
Voltage-gated cation channels
Sodium channel, voltage-gated (Nav)
115110132
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ion_trans
Na_trans_assoc
IQ_SCN5A_C
GPHH
Motif
Other DBs
NCBI-GeneID:
115110132
NCBI-ProteinID:
XP_029491392
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All DBs
Position
LG26:6011248..6050611
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AA seq
1854 aa
AA seq
DB search
MPTRKITLLEAWERNRTFRRKKAKDLKICPRLLPLLRDPSVVASLTQQNAKMVALLPPTG
TEVFRHFTLESLVEIDRRMAKEAKEQERQKTLNIEVAEQDLPKPAVDLETGKILPFIYGD
PPCELFNTPLEELDPFYKSHKTFIVITKNNTIFRFNAEPACYILTPFSILRRGSIKILMH
SLFSMFIMLTVVSNCAFMTMSDPPAWSKTVEYVFTGIYTFEATIKVLSSGFCVGDFTYFR
DPWNWLDFILISMTYLTEFVDLGNVSVFRMFRVFRALKIITVIPGLKTIVGTLIMSVKKL
ADVMIITVFCLAVFAMIGLQMFMGILKQKCVHWPPGEWHFNSTYMGNIAMANGLNNVMGY
NDTNTGSSTWDFKAYINDKANHYFLPGMLEPLLCGNASDAGICPEGYTCMKAGGNPNYGY
TSYDNFGWASLSLIQLMTQDFWENLLKLTLRSAGKTYMIFFVVVIFLCSFYLINLILAVV
AIAHAEQNEATRAEAKEKEEEYAMIMVQLKERRKAEVKEMASRPKGSKDQLEVAGLQKKT
PSSPSVYSQDAMDDLEEELRPCPPCWYKCSDVFLKWNCCVPWVTFKKWVYFIVMDPFMDL
VITICIVLNIMFLAMEHYPMTMEFEEVLSVGNLVFVGIFTAEMVLKLIAMDPHYYFQVGG
NIFDSIIVATSLMELCLADVEGLAVLRIFRLMRVFKQAKSWPTLNKTIKIIGNSVGTLVN
ITLVLAIIIFMFAAGGMQLFGKSYKDCVCKISLDCELPRWHMHDFFHAFLLIFRVLCGEW
IETMWECMEVAGQGICLVFFMTVMVIGKLVVLNLFLTFLLSSFSRYNLAAPEEDGEMNNL
QIATSRITRGMDWAKAYVIKQICITMGNQPKEDGDGADGNGGSNGDVNGLPKDSLALKNI
NSSDNPKADLELKMLDDVNPSGFLANANLTLDVPIAKMESDDDEDDSSEVKGEGANEDAK
RRKPIAQDNASLICRTSVEVKKEEANPTSPENCWTATCIGRCPCLDCDITTGKGKTWWNF
RKTCILIVEHNYFQSFIIFMILMSSGALAFEDVHIEQRRTIKVILEYADQVFTYVFIIEM
LLKWVAYGFQAYFTNAWCWLDFLIVNVSMISLTANILGYAGLGSIQSLRKLRALRPLRAL
SRFEGMKVVVNALVGAIPSIVNVLLVCATFWLIFNIIGVNLFAGKYYYCFNTTSGEMFSA
DVVNNKTECVQLIEDNADVRWMNSKINFDNVAMGYLSLLQVATFKGWLGIMYGAVDSRIV
GDQPMYEDNVYMYIYFVMFTIFGTFVMLNLFIGVIIDNVNQQKKKFGGKNIFMTEEQNKY
YNAMKKLGSKKLQKPIPRPKNKFAGIIYDLITQPFFEIFIAVLICLSMVTMMVDTDDQSE
EKDSILFFINLVFIFIFIAECILKLIGLRQYYFTVGMNILDFVVVVLSILGLLLADVIEK
YFVSPTLFRVVRLARIGRVLRLIRGAQGIRTLLFSLRMSLPAIFNIGLLFFLIMFIFAIF
GMSNFAYVKKEVGIDDMINFETFGNSIICLFMIATLVGWDSVLSPMMSSTPPNCDPYIEN
PGTDVRGNCSSLGWGILFICSYIIMCFFLVVNMYIAVILENFNVVIEESGNPLCEEDFEM
FYETWEKFDPGASQFIAYDILSEFCDTLKDPLRIPKPNAIKLITMDLPIVPGDKIHCLDI
LLALTTEVLGESGEMDAMKESMEEKFMAKNPFKVSFKPITTTLRRKQDEVAAVVIQRAYC
KHLLRSSMKLASHKYHEKKELTKEDEAPPEQEGMIAIRMSKLYESQQSLGVDETVVDMDS
RVKRERKELTATQPPVVTTETPLPVELQNEVISHSAPFVIPASTHNSQLKESHV
NT seq
5565 nt
NT seq
+upstream
nt +downstream
nt
atgccgacccgaaagataacactgctggaagcctgggagagaaacaggacctttcggagg
aagaaagctaaagacctgaaaatatgtcctcgtctactcccactgctgagagaccccagt
gtggttgcatccctcacccagcagaatgccaagatggtcgccctgctccctcccacaggc
accgaagtgttccgccacttcacccttgagtcgctggtggagattgataggcggatggcc
aaggaagcaaaggagcaggagagacaaaagaccctgaacattgaggtggcagagcaggac
ctgccaaagccagccgtcgacctggagaccggcaagatcctgccgttcatctacggagac
ccaccatgtgagctgttcaacacacctctggaggaactggatcctttctacaaatcacac
aaaacctttattgtcatcaccaaaaataatacaatcttcagattcaatgctgagcctgcc
tgctacattctgactcccttcagtattctcaggagaggatccatcaaaattctcatgcat
tcattgtttagcatgttcatcatgttgacagtcgtgtccaactgtgcgtttatgacgatg
agtgaccctccggcatggagtaaaactgttgagtatgttttcactggtatctataccttt
gaggcaacaattaaagtgttgtccagtggcttctgtgttggagatttcacatactttcga
gatccatggaactggctggatttcattttgatcagcatgacgtacctcacggagtttgtt
gacctgggcaacgtgtctgtcttcaggatgttccgtgtattccgagcccttaaaataatc
actgtaattcccggtctgaaaaccattgtgggcactctgatcatgtcagtgaagaagctg
gctgatgtgatgatcataacagtgttctgcctggctgtgttcgctatgatcggcctgcaa
atgttcatgggaatcctgaagcagaagtgtgttcactggccccctggtgaatggcatttc
aactccacctacatgggcaacatcgctatggctaatggtttgaataacgttatgggctac
aacgacacgaacaccggcagcagcacatgggacttcaaggcatacatcaacgataaagca
aaccattacttccttcctggaatgttagaacctcttctttgtggaaacgcttctgatgct
ggaatatgtcctgaaggatacacgtgtatgaaggccggagggaatcccaactatggatac
acaagctacgacaattttggatgggcctccctttctctaattcagctcatgacacaggac
ttctgggaaaatctactcaagctgactcttcgctcagcagggaaaacctacatgattttc
tttgtggtggtgatcttcctgtgctcgttctatctgatcaacctgatcctagctgtggtg
gccatagcgcatgctgagcagaacgaggccaccagggccgaggccaaggagaaggaggag
gagtatgccatgatcatggtgcagctgaaggaaaggagaaaagcggaggtcaaagagatg
gccagtagacccaaggggagtaaggaccagctggaagtagcaggccttcagaagaagaca
cccagttcacccagtgtctacagccaagatgccatggacgatttggaggaggaactgagg
ccttgtcctccttgctggtacaagtgttcagacgtcttcctgaaatggaactgctgtgtg
ccctgggtgactttcaagaagtgggtgtacttcatagtgatggacccattcatggacttg
gtcatcaccatctgcattgtactcaacatcatgttcttggccatggagcactaccccatg
acaatggagtttgaagaagtgctgagtgtggggaacttggtcttcgtaggaatcttcaca
gcagagatggtgctgaagctcatcgccatggatccgcactactacttccaggtcgggggg
aacatcttcgacagcatcattgtggcaaccagcctgatggagctgtgcctggccgacgtc
gagggtcttgccgtgcttcgcatcttccgtctgatgcgtgttttcaagcaggccaaatcc
tggcccacactcaacaagacaatcaagatcatcggtaattcagtgggcaccctagttaac
atcactctggttctggccatcatcatcttcatgttcgccgcggggggcatgcagctcttc
ggcaagagctacaaagactgtgtctgcaagatctccttggactgcgagctgccccgctgg
cacatgcatgacttcttccacgcttttctcctcatcttccgggtgctgtgcggagagtgg
atcgagaccatgtgggaatgcatggaggtggccggacagggcatttgtctcgtcttcttc
atgacggtcatggtcatcggtaaactagtggtgttgaacctcttcttgacctttctgctg
agctcgttcagccgttacaacctggcggctccagaggaggacggggagatgaacaacctg
cagatcgccaccagcaggattaccaggggcatggactgggccaaggcatacgtcatcaag
cagatctgcattaccatgggcaaccagcctaaggaggatggagacggggctgacggtaat
gggggtagtaatggggatgtgaacggcctcccaaaggacagcttggctttgaaaaatata
aattccagtgacaacccaaaggctgatttggagctcaaaatgctggacgatgttaaccca
agtggatttcttgcaaatgcgaatttgaccctggatgtacctattgccaaaatggagtct
gatgatgatgaggatgacagctctgaagtgaaaggagaaggcgcaaatgaggatgctaag
cgaaggaaacctattgcacaggacaatgcctctttgatctgcaggacaagtgtggaagtg
aagaaagaagaggcaaaccccaccagccctgagaactgctggactgcgacatgtattgga
cgatgcccttgccttgattgtgacatcaccacagggaaaggaaaaacttggtggaacttc
aggaagacatgcatcctcattgtggagcacaactactttcagtcctttatcatcttcatg
atcctgatgagtagtggagctttggcttttgaagacgtacacattgaacagcgcaggacc
ataaaagtcatcctggaatatgctgatcaagtcttcacctacgtgttcattattgagatg
ctcttgaagtgggtggcttacggattccaggcctacttcacaaatgcatggtgctggctg
gacttcctcattgtgaatgtgtctatgattagtttaacggctaacatcctgggctacgct
ggacttgggtcaatccaatctcttcgaaagttacgggctttgcggcccctccgcgccctg
tccagatttgagggaatgaaggtggtggtgaacgctctggtgggggccattccttccatt
gtcaatgtgcttctagtgtgcgccaccttctggctcatcttcaacatcattggagtcaac
ctgtttgctgggaagtactactactgcttcaataccacgtctggggagatgttctccgct
gacgttgtgaacaacaagaccgaatgcgtccaactaatagaggataatgccgacgtgcgc
tggatgaactcaaagatcaactttgacaacgtggccatgggctacctttccctcctgcaa
gtagcaacatttaaaggatggctgggtataatgtatggcgctgtggattcacgtattgtg
ggagaccaacccatgtatgaggataatgtttacatgtacatctactttgtcatgttcacc
atctttgggaccttcgtcatgctgaatctcttcattggtgtcattatcgacaacgtcaac
cagcaaaaaaagaagtttggagggaaaaatattttcatgacagaggaacagaataaatac
tacaatgccatgaaaaagcttggttccaagaagctacagaaacccattcctagacccaag
aacaaattcgcaggcattatttatgacctgatcacccaaccattcttcgagatcttcatt
gctgtgctgatctgcctcagcatggtaacgatgatggtggacacggatgaccagagcgag
gagaaggatagcatcctcttcttcatcaacctggtgtttatcttcatcttcatcgcagag
tgtatcctcaagttgatcggattgcggcaatattattttaccgtcggaatgaacatttta
gattttgtcgtcgtcgttctctccatccttggtttactgctggcggacgtcatagagaag
tattttgtctcacctacccttttccgtgtcgtaagactggccaggattggtcgagttctg
agactcattcgaggagctcaaggcatccggacactgttgttttccctgaggatgtcactt
ccagctatcttcaacattgggctcctgttcttcctcatcatgtttatcttcgccattttt
ggaatgtccaactttgcgtatgtcaaaaaggaggtcggaatagacgatatgatcaatttt
gaaacttttggcaacagtatcatttgtctgttcatgatcgcaaccttagtcggttgggac
agtgtcctctcacccatgatgagtagtacacctccgaactgtgacccgtacattgaaaat
ccaggcacagatgtaagaggcaactgcagcagccttggttggggaattctttttatctgc
agctacatcatcatgtgtttctttcttgtggtcaacatgtacattgccgttattctcgag
aacttcaatgttgtcatcgaggagagcggcaacccgctgtgtgaggaagactttgagatg
ttctacgagacctgggagaagtttgaccctggcgcgtcacaattcatcgcctacgacatt
ttgtcagagttctgtgacacgcttaaagacccgctcaggatccccaaacccaacgcaatc
aagctgatcaccatggaccttcccattgtccctggggataagatccactgtctggacatc
ctgctggcgctgaccacagaggtgctgggagaatcaggggagatggatgccatgaaggag
agcatggaggagaagttcatggccaaaaacccctttaaagtgtcattcaagccaatcacc
accaccctgaggcgaaagcaggacgaggtagcagctgttgttattcagagagcctattgt
aagcatctgctgagaagttcgatgaaactcgcttcccacaagtaccatgagaagaaagag
ttaaccaaggaggacgaagcgccaccagagcaggaaggaatgattgccatcagaatgagc
aaactgtatgaaagccaacaatcactcggagtggatgaaaccgttgtagatatggattct
cgtgtaaaacgggagagaaaagaactgacagcgacacaacctcctgtggtgactactgaa
acgccgctgcctgtggagcttcagaacgaggtcatctcgcactctgccccctttgtcatc
ccggcctcaacccataactcacagctgaaagagtcccatgtttga
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integrated database retrieval system
