Oncorhynchus nerka (sockeye salmon): 115110244
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Entry
115110244 CDS
T07952
Name
(RefSeq) 116 kDa U5 small nuclear ribonucleoprotein component
KO
K12852
116 kDa U5 small nuclear ribonucleoprotein component
Organism
one
Oncorhynchus nerka (sockeye salmon)
Pathway
one03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
one00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
115110244
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
one03041
]
115110244
Spliceosome [BR:
one03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
115110244
Complex C
U5 SnRNP specific factors
115110244
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
GTP_EFTU
EFTUD2
EFG_C
EFG_IV
GTP_EFTU_D2
EFG_III
EFL1
EF-G_D2
MMR_HSR1
Motif
Other DBs
NCBI-GeneID:
115110244
NCBI-ProteinID:
XP_029491596
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Position
LG26:complement(10029083..10045117)
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AA seq
970 aa
AA seq
DB search
METDLYDEFGNYIGPELDSDEDDDLETDDRDADEADEDEDDDPADADEDVPGMEVVLHED
KKYYPTAEEVYGPEVETLVQEEDAQPLTEPIIKPVRNKQFTLMEQELPSTVYDMEFLADL
MDSPELIRNVTLCGHLHHGKTCFVDCLIEQTHPEIRKRDDMDLRYTDILFTEQERGVGIK
STPVTMVLPDSRGKSFLFNIMDTPGHVNFSDEVTSGIRLSDGIVLFIDAAEGVMLNTERL
IKHAVQERLAITICINKVDRLIVELKLPPTDAYYKLRHIVDEVNAMLSTYSTDENLVVSP
LLGNVCFASSQYCVCFTLGSFAKIYSDTYGDINYTEFAKRLWGDIYFNPKTRRFTKKAPT
SNSQRSFVEFVLEPLYKILSQVVGDCDTSLPRVLDELGIHLVKEELKLNIRPLLRLVCKR
FFGEFTGFVDMCVQHIPSPQGGAKNKIEHSYTGGLDSDLGEAMAECDPDGPLMCHTTKMY
STEDGVQFHAFGRVLSGTIQAGQPVKVLGENYTLEDEEDSQVCTVGRLWINVARYQIEVN
RVPAGNWVLIEGCDQPIVKTATITEPRGNEEAQIFRPLKFNTASVIKIAVEPVNPSELPK
MLDGLRKVNKSYPSLTTKVEESGEHVILGTGELYLDCVMHDLRKMYSEIDIKVADPVVTF
CETVVETSSLKCFAETPNKKNKITMIAEPLEKGLAEDIENEVVQITWNRKKLGEFFQTKY
DWDLLAARSIWAFGPDTTGPNILVDDTLPSEVDKALLGSVKDSIIQGFQWGTREGPLCDE
PIRNVKFKILDAVIAQEPLHRGGGQVIPTARRVVYSAFLMATPRLMEPYYFVEVQAPADC
VSAVYTVLARRRGHVTQDAPIPGSPLYTIKAFIPAIDSFGFETDLRTHTQGQAFSLSVFH
HWQIVPGDPLDKSIVIRPLEPQPAPHLAREFMIKTRRRKGLSEDVSISKFFDDPMLLELA
KQDVVLNYPM
NT seq
2913 nt
NT seq
+upstream
nt +downstream
nt
atggagacggatctgtatgacgagtttgggaactacattggtccagaactagactctgac
gaggatgatgatctggagacagacgacagagatgcggatgaggctgatgaggatgaggat
gatgacccggctgatgctgatgaagatgtcccaggaatggaggtagttctgcacgaggat
aagaaatactatcctacagcagaggaagtgtacgggccggaggtggaaactttagtccag
gaagaggacgcacagcccctcacagaacccatcatcaagcctgtaaggaacaagcagttc
actctgatggaacaggagctaccttccactgtttatgacatggagttcctggctgaccta
atggacagtcccgagctgatccgtaacgtcaccctgtgtggccacctgcaccacggcaag
acgtgcttcgtggactgcctgattgaacagacacacccagagatcaggaagagagatgac
atggatctccgttacacagatatcctgttcactgaacaggagcgaggggttggtatcaag
agcacccctgtcacaatggttcttccagactccagaggcaaatccttcctcttcaacatc
atggacacaccaggccacgtcaacttttcggatgaggtgacatcaggcatccgactctcc
gacggcatcgtgcttttcatcgacgcagcagaaggggtgatgttaaacacagagcgtctg
atcaagcacgcagtccaggagcgtctggccatcaccatctgcatcaataaggtggaccgc
ctcatcgtggagctcaagctgccccctacagacgcctactacaaactacgccacatagtg
gacgaggtcaacgccatgctcagcacctactctacagacgagaacctggtggtgtctcct
ctcctggggaacgtgtgtttcgccagctctcagtactgtgtttgcttcaccctgggctcc
ttcgccaagatctactccgacacctacggtgacatcaactacacagagtttgccaagagg
ctgtggggggacatttatttcaaccccaaaacgcgcaggttcactaagaaagcccccacc
agtaactcccagcgtagctttgtggagtttgtgttggaacctctgtacaagatcttatct
caggtggtgggtgactgtgacacgtctctgcctcgggtgctggatgagttggggatccac
ctggtcaaagaggagctgaagctcaacatcagacctctactcaggctggtctgtaagcgc
ttcttcggagagttcactggctttgtggacatgtgcgtgcagcacatcccctcaccacag
gggggtgccaagaacaagatagagcacagctacactggaggactagactcagacctgggg
gaggccatggcagaatgcgaccctgatggtcctctgatgtgccacaccactaagatgtac
agtactgaggacggggtgcagttccacgcgttcggccgggtgctgagcggtaccatccag
gcgggccagccagtcaaggtgctgggcgagaactacactctggaggacgaggaggactcg
caggtctgcacggtgggacgcctctggatcaacgtcgccaggtaccagatagaggtgaac
cgtgtgcctgctggcaactgggttctcattgagggctgtgaccagcccatcgtcaagaca
gccaccatcaccgagcccagagggaacgaggaagcccagatcttccggccgctcaagttc
aacacggcgtctgtcatcaagatcgctgtggagccagtcaacccgtcagagctgcccaag
atgttggacggactgcggaaggtcaataagagctacccctccctcaccaccaaggtggag
gagtcaggggaacatgttatcctgggtactggggaactctacctggactgtgtcatgcac
gacctgcggaagatgtactccgagatcgacatcaaggtggctgaccccgtggtgaccttc
tgtgagacggtagtggagacgtcgtctctcaagtgctttgccgagacgccgaacaagaag
aataagatcaccatgattgccgagcctctggagaagggcctggctgaggacatagagaac
gaggtggtgcagatcacatggaacaggaagaagctgggagagtttttccagaccaagtat
gactgggatctgctggctgccaggtctatctgggcctttgggcctgacaccaccggacct
aacatcctggtagatgacaccctgccttctgaggtggacaaggctctgctgggctcggtt
aaggacagcatcatccagggcttccagtggggcaccagggaggggcctctgtgtgatgaa
cctatcagaaacgtgaagtttaagatcctggatgcggtcatagcgcaggagcctctacac
agaggaggaggacaggtcatccccacagccaggagagtggtgtactctgccttcctcatg
gccacccccaggttgatggagccctattactttgtcgaggtccaggccccagctgactgt
gtgtctgctgtgtacacagtactggccagacggagaggtcatgtcacccaggacgccccc
atccccgggtctcccctctacaccatcaaggccttcatcccagccattgactcgtttggc
ttcgagactgacctgagaacacacacacagggccaggccttctccctgtccgtcttccac
cactggcagattgtccctggtgaccccctggacaagagcattgtgatcaggccgctggag
ccccagcctgcccctcacctggcaagagagttcatgatcaagacccgccggcgcaagggt
ctgagtgaggatgtgagcatcagcaagttctttgacgaccctatgttgttggagctggcc
aagcaggacgtggtgctcaactaccccatgtga
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