Oncorhynchus nerka (sockeye salmon): 115110608
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Entry
115110608 CDS
T07952
Name
(RefSeq) low-density lipoprotein receptor-like
KO
K12473
low-density lipoprotein receptor
Organism
one
Oncorhynchus nerka (sockeye salmon)
Pathway
one03272
Virion - Hepatitis viruses
one04144
Endocytosis
Brite
KEGG Orthology (KO) [BR:
one00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03272 Virion - Hepatitis viruses
115110608
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
115110608
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
one04131
]
115110608
Membrane trafficking [BR:
one04131
]
Endocytosis
Clathrin-mediated endocytosis
Low-density lipoprotein receptor (LDLR) family proteins
115110608
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GFIT
Motif
Pfam:
Ldl_recept_a
Ldl_recept_b
FXa_inhibition
cEGF
EGF_CA
SGL
Psg1
Motif
Other DBs
NCBI-GeneID:
115110608
NCBI-ProteinID:
XP_029492276
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All DBs
Position
LG26:20498354..20509451
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AA seq
880 aa
AA seq
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MGRLLCLLLVFLACCVVQTNTETVCGIGQFLCGNGKCITLRWVCDDTDDCGDGTDELPGT
CSARTCGTTEFSCGGRLNQCVPSTWLCDGKADCENGADEESCAPKHCTDNKFHCSNGQCV
SASFVCDEELDCDDGSDEASCPATTCSSTSFQCNNSVCVPHLWACDGDADCSDGSDEWPQ
NCGTRAPEGAPKPCSLREFQCGSGECIHSSWKCDGGFDCLDRSDETNCSRLTCRPDEFQC
GDGTCIHGGRQCNRQYDCRDLSDEMGCVNVSHCKGPTRFKCRSGECISMEKVCDKQRDCR
DWSDEPLRECDSNECLYNNGGCSHICNDLKFGYECQCPTGYYLTDKKRCEDIDECANPDI
CSQICVNHMGSYKCECEEGYQVDPATKACKAIGTVAYLFFTNRHEVRKMTLDKSEYTRVI
PHLKNAVALDMDMVSKEIYWSDLSQKKIYSTSMDLAADTAQHKVVIDSDIEAPEGIAFDW
VHGNIYWTDSIRSSISVSTANGSRRKTLFRNDLAKPRAIVVDPHSNFMYWTDWGTPAKIE
KGGLNGGDRAALVTDNIVWPNGITLDLLNQRLYWVDSKLHTLSSIDVQGGGRRTLIIDEH
RLAHPLGITVFEERVFWTDVSNNAILSANRVTGRDIKPVAEHLVSPEDIVLYHNLKQPTG
RDWCKVANGGCEFMCLAAPQVGLHSPKYTCACPDNMLLAKDMRKCVPAAPTPATPVKPIV
PSPNPPPAPAHTSPAPPARATTKAPIITTTVTPAPPRTTKPVPRNPQPAQPDTPRIPQAQ
TTTVPQATTQDIRHEFAAIPTAPSTPAALYIALPIAIVCLVAFVAVLLWRNYRLKNTNTI
HFENPVYQKTTEDQVHICRSHSPDGYSYPPRQIVSLDDEA
NT seq
2643 nt
NT seq
+upstream
nt +downstream
nt
atggggcggctgctgtgcctgctgttggtgttcctggcttgctgtgttgtccaaacaaac
acagagacagtatgcgggatcgggcagttcctgtgtgggaacgggaagtgcattacgctg
agatgggtgtgtgacgacacagatgattgtggagatggaactgacgagctccctggaacc
tgctcggccagaacatgcggaaccacagagttcagctgtggtggacgtctgaaccagtgt
gttcccagtacctggctctgtgacggcaaagcagactgtgagaatggagctgatgaggag
agctgtgcgcccaagcactgcacagataacaaattccactgcagtaacggccagtgtgtg
tcggcctcctttgtgtgtgatgaggagttggactgtgatgacgggagcgacgaggcttcc
tgcccagccaccacctgtagctccacctccttccagtgcaacaactctgtatgtgtgccg
cacctgtgggcctgcgacggagacgctgactgctcggatggctccgacgagtggccccag
aactgtgggacgcgagcccctgagggtgcccccaagccctgctcccttcgggagttccaa
tgtggcagcggggagtgtatccacagcagctggaaatgtgatggaggattcgactgcctg
gatcgctctgacgagaccaactgtagccgcctcacctgccgccccgatgagttccaatgc
ggtgatggcacctgtatccacggcggtcgccaatgtaaccgccagtacgactgcagagac
ttgagtgatgaaatgggctgtgtcaatgtgagccattgcaagggtcccaccaggtttaag
tgccgtagtggggagtgcatcagtatggagaaggtgtgtgacaagcagcgtgactgcagg
gactggtcagatgagcctctcagagagtgtgattccaacgagtgcctgtacaacaatggc
ggctgctcacacatctgcaatgacctgaagttcggctatgagtgccaatgtcccaccggc
tactacctgacggacaagaaacgctgtgaagatatcgatgagtgtgccaacccagacatc
tgcagtcagatctgtgtcaatcatatgggcagctacaagtgcgagtgtgaggagggctac
caggtcgacccagcgaccaaagcctgcaaggccatcggcactgtagcctatctgttcttc
accaatcgccatgaggtgaggaagatgacactggacaagagtgagtacacgcgtgtcatc
ccccacctgaagaatgcagtggctctggacatggacatggtttccaaggagatttactgg
tctgacctctcccagaagaagatctacagcacctcaatggacttggctgcagacacagcg
cagcacaaagttgtgattgacagcgacatcgaagctccggagggcatcgcctttgactgg
gtccacggcaacatctactggaccgacagtatccgcagcagcatctctgtgtcaaccgcc
aacgggagccgccgcaagactctcttccggaatgacctggccaagccccgcgctattgtg
gtcgacccccacagcaatttcatgtactggactgactggggaactccagccaagattgag
aagggaggtctgaacggaggagaccgtgctgctctggtcacagacaacattgtgtggccc
aatggaatcacccttgacctgctgaaccagcggctgtactgggtggactccaagctgcac
accctctccagtatcgacgtccagggtggcggccgaaggacactcattatagatgaacac
aggctagcccatcccctaggcatcactgtgtttgaggaaagagtgttttggacagatgtc
agcaacaatgccattctaagtgccaaccgtgtgacaggcagggacatcaagcctgtggca
gagcacctggtatccccagaggacattgtgttgtaccacaacctcaaacagccaactggc
agggactggtgcaaggtggccaacggaggctgtgagttcatgtgtctggcagccccccag
gtgggcctacattcccccaagtacacctgtgcatgccctgacaacatgctgctggccaaa
gacatgaggaaatgtgtaccagctgcaccaacacctgcaactccagtcaagcccattgtt
ccctcccccaaccccccaccggcacccgcccacacctcccctgcacctccagcccgcgcc
accactaaggcccccatcatcactaccacagttacgcctgcgcctccccgcactaccaag
cctgtgccacgcaacccccagcctgcccagccagatacacccaggatcccccaggcccag
actaccacagtgcctcaagccaccactcaggacatccgccatgaatttgctgctataccc
acagccccttcaacccctgcagctttatacatcgcgctgcctatagccattgtgtgtctg
gtggcatttgttgccgtgctgctgtggaggaactacagactgaagaacaccaacaccatt
cactttgaaaacccagtctaccagaagaccactgaagaccaggtgcacatatgcaggagc
cacagtccagacggctactcctacccaccgagacagattgtgagtcttgatgatgaggct
tga
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