KEGG   Oncorhynchus nerka (sockeye salmon): 115111514
Entry
115111514         CDS       T07952                                 
Name
(RefSeq) lysine-specific demethylase 2B-like isoform X1
  KO
K10276  F-box and leucine-rich repeat protein 10/11 [EC:1.14.11.27]
Organism
one  Oncorhynchus nerka (sockeye salmon)
Pathway
one03083  Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:one00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03083 Polycomb repressive complex
    115111514
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03000 Transcription factors [BR:one03000]
    115111514
   04121 Ubiquitin system [BR:one04121]
    115111514
   03036 Chromosome and associated proteins [BR:one03036]
    115111514
Enzymes [BR:one01000]
 1. Oxidoreductases
  1.14  Acting on paired donors, with incorporation or reduction of molecular oxygen
   1.14.11  With 2-oxoglutarate as one donor, and incorporation of one atom of oxygen into each donor
    1.14.11.27  [histone H3]-dimethyl-L-lysine36 demethylase
     115111514
Transcription factors [BR:one03000]
 Eukaryotic type
  Zinc finger
   CXXC CpG-binding proteins
    115111514
Ubiquitin system [BR:one04121]
 Ubiquitin ligases (E3)
  Multi subunit type E3
   SCF complex
    Target recognizing subunit (F-box)
     115111514
Chromosome and associated proteins [BR:one03036]
 Eukaryotic type
  Histone modification proteins
   Histone demethylases
    115111514
   Polycomb repressive complex (PRC) and associated proteins
    Noncanonical PRC1 (PRC1.1)
     115111514
SSDB
Motif
Pfam: PHD_4 zf-CXXC F-box-like F-box PHD LRR_At1g61320_AtMIF1
Other DBs
NCBI-GeneID: 115111514
NCBI-ProteinID: XP_029493499
LinkDB
Position
LG27:complement(13627193..13647861)
AA seq 780 aa
MALSLSADEEDYDSESEQQREANRPKPKMGTSAAVKLPSNRSASGARRRRTRCRKCEACL
RTECGECHFCKDMKKFGGPGRMKQSCIMRQCIAPVLPHTAVCVVCGEAGKEDTLEEEDKF
NVMLMECSICNEIVHPNCLKVKDASGVVNDELPNCWECPKCNYAGKTGKVCKQKRGPGFK
YASNLPGSLLKEQKAVKEEGEATSTSTAKRKPEGDDISRHRPEEREPLHRHPPVLTPSTL
PRPRPEDKLRKKRKLFDDDEEEDFSVRKKGKADEPLFPKLLHQIKTEEEDQEEEVDEEET
DSLFWRGLERRDRLEDTEDWAEDGDGKDTKTNFPRPPLKTPVLDSDQSHCSSPQAGPSSE
GGSEPQEKGPRPKARRKRRLPNKELSKALNQEIQKTEDCLANENRQPLKVEPESENEEPK
RGFRIGSDLGGERPHLRIKEMNGTPWELRHFYPSQITPLGFNRSSPGTRPLPPRSPPKCV
QMERHVIRPPPISPPPDRLPLVDGKTHAVQREVWMKLFGHFTHKELCVCMRVCKTWNRWC
CDKRLWTNIDLNRCKSITPLMLSGIIRRQPLSLDLSWTNISKKQLSWLINRLPGLRVLLL
SGCSWVAVSALCTSSCPLLRTLDVQWVEGLKDAQMRDLLSPPTDNRPGQLDNRCKLRNIL
DLRLAGLDITDASLRLIIRHMPLLSRLDLSYCNHINDHSVNLLTAAGTTTRDSLTEINLS
VCNRVTDHSLTFFKRCGSICHIDLRYCKQVTKMACEQFIAEMSVSVQFGLKEDKLLQKLS
NT seq 2343 nt   +upstreamnt  +downstreamnt
atggccttgtcactgagtgcagatgaagaggattatgattcagaatctgaacagcaacga
gaagccaaccggccaaagcccaagatggggacttcagcagcggtcaagctgccgtccaat
cgcagtgcgtctggcgccagacgcaggagaacacgctgccgaaagtgtgaggcctgcctc
cgaactgagtgtggagaatgtcacttctgtaaagacatgaagaagtttggaggacctggg
cgcatgaagcagtcctgtatcatgaggcagtgcattgcacctgtcctgccccacacagct
gtgtgtgtggtgtgcggagaagcagggaaggaggacacattggaggaggaggacaagttc
aacgtcatgctcatggagtgctccatctgcaatgagattgtccaccccaactgcttaaag
gtaaaagatgcttctggcgtggtgaacgatgaacttcctaactgttgggaatgtcccaaa
tgcaactacgctgggaaaaccggaaaagtctgcaagcaaaaaaggggaccagggttcaag
tatgcgtctaacctccctggctccctgctgaaggagcagaaggcagtcaaggaggagggt
gaggccacatctacgtctacagccaagagaaagcctgagggggatgatatctcaagacac
agacctgaggaacgggagcccctccacagacacccccctgtcctgacccccagcaccctg
cctcggcccagacctgaggacaaactgaggaagaagaggaagctcttcgacgatgacgag
gaagaggacttcagtgtgagaaagaagggaaaggcagatgaacctctgttccccaaactc
cttcatcagatcaagactgaggaggaagaccaggaggaggaagtggatgaggaggagacg
gactctctgttctggcgaggcctggagaggagagatcgtttagaagataccgaggactgg
gcagaggacggggatggcaaagacacaaagacaaactttccaaggcctcctctcaaaact
cctgttctagacagtgaccagtctcactgcagctctccacaggctggccccagcagcgag
ggtggcagtgaaccccaggagaagggcccacgccccaaagcgcgccgcaaacgccgttta
cccaacaaggagctgagcaaagcactgaaccaggagatccaaaagactgaggactgccta
gccaatgagaaccgccagcccctcaaggtggagccagagagtgagaatgaggagcccaag
aggggcttccgcatcggcagtgacctgggaggggagcgcccccacctccggatcaaggaa
atgaacggcaccccctgggagctgcgccacttctatcccagccagatcacccctctgggc
ttcaacaggagctcccctggcacccggcccctgcccccacgctccccacccaagtgtgtc
caaatggagcggcacgtaatccggccaccccccatcagccccccgccggacagacttccc
ctggtggacgggaagacccatgcagttcagcgagaggtctggatgaagctctttgggcac
ttcacacacaaggagctgtgtgtctgcatgcgtgtctgcaagacatggaatagatggtgc
tgtgataaaagactgtggaccaacatcgatctgaaccgttgtaaatctatcactcccctc
atgctgagtggcatcatccgcagacagcccctctcactggacctcagctggaccaacatc
tccaagaagcagctgagctggctaataaaccgcttaccaggtctgcgggtgttgctgctc
tcagggtgctcgtgggtggctgtgtctgccctctgtacctctagctgccctctgctgcgc
accctggatgtgcagtgggtggaagggctcaaagatgcccagatgagggacctgctctcg
cccccgaccgataacagaccaggtcagttggacaaccgctgtaaactgaggaacatcctg
gacttgcgtctggccgggctggacatcacagatgcctctctgcgtctgattatcagacat
atgccgttactttcccgactggacctgagctactgcaaccacatcaacgaccattcggtc
aacctgctgacggccgcagggaccacaaccagagattcactcacagagatcaacctgtca
gtttgtaatagggtgacagaccattcccttaccttcttcaagcgctgtggaagcatctgt
cacattgacctgcgctattgcaaacaggtgaccaagatggcctgtgaacagttcatagca
gagatgtctgtgagtgtacagtttggactcaaagaggacaaattactgcagaaactcagt
tag

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