KEGG   Oncorhynchus nerka (sockeye salmon): 115112009
Entry
115112009         CDS       T07952                                 
Symbol
kdm6a
Name
(RefSeq) lysine-specific demethylase 6A isoform X1
  KO
K11447  lysine-specific demethylase 6A [EC:1.14.11.68]
Organism
one  Oncorhynchus nerka (sockeye salmon)
Brite
KEGG Orthology (KO) [BR:one00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:one03036]
    115112009 (kdm6a)
Enzymes [BR:one01000]
 1. Oxidoreductases
  1.14  Acting on paired donors, with incorporation or reduction of molecular oxygen
   1.14.11  With 2-oxoglutarate as one donor, and incorporation of one atom of oxygen into each donor
    1.14.11.68  [histone H3]-trimethyl-L-lysine27 demethylase
     115112009 (kdm6a)
Chromosome and associated proteins [BR:one03036]
 Eukaryotic type
  Histone modification proteins
   HMT complexes
    MLL3/MLL4 complex
     115112009 (kdm6a)
   Histone demethylases
    115112009 (kdm6a)
SSDB
Motif
Pfam: KDM6_C-hel JmjC KDM6_GATAL TPR_1 TPR_8 TPR_2 TPR_17 TPR_12 TPR_16 TPR_11 TPR_CcmH_CycH TPR_7 TPR_19 TPR_9 ARM_TT21_C RPN7 ANAPC3
Other DBs
NCBI-GeneID: 115112009
NCBI-ProteinID: XP_029494545
LinkDB
Position
LG1:complement(19624753..19710672)
AA seq 1527 aa
MKSCGVSLDVAASATARSLGAAGDEENKMAAGKANEIEEDFPKLTSQERESLVKIDSSLF
GFQRLHEDGARTKALLLKAVSCYDSAILKAEGKVEPEMFCQLGHFNLLLQDYPKALSAYQ
RYYSLQSDYWKNAAFLYGLGMVYFHYNAFQWSPFSLSRPVQPPSSEAQAGQKRAIKAFQE
VLYVDPSFSRATEIHMRLGLMFKGNTDYESSLKHFQLALIDSNPCTLSKAEIQFHIAHLY
EIQKKFRAAKEAYESLLQTENLPAQVKATTLQQLGWMHHTVELLGDKGSKDSYAIQCLQK
SLEADPNSGQSWYFLGRCYSSIGKVQDAFISYRQSIDKSEASADTWCSIGVLYQQQNQPM
DALQAYICAVQLDHSHAAAWMDLGTLYESCGQPHDAIKCYINATRSKSCTNTAALTHRIK
LLQAQLCNPQPGSLAGGKGTKMLPSIEEAWSLPIPAELTSRQGGLNTAAGSPGSQTQQQQ
ASKSHQSGEGGQGQTHVSPHPSHTDGQASPAKRKRTASPAKGAVDLWTNHPVQHQIPSWY
LTPQKLQLLDQLRTNRASLKPPQMQILDQLEKQFSLMQQHQHQVRQQAAGQLRPTLPNGP
SLSPNSLPSPHPLSRTSPVSQTTARPPCTAQPMANTPLSSSPLGQLGNPEGGTVGNNRTP
GLPGAGTLPGGGGSNGNVPYLQQNCLPHNCNATSTSNPSTPTSNNTSHSSHSTSNVEEAW
KSQQRTNSTQGLHKGPGSHSAGPNGEHPFSSSSSQAAGSGAQILNQVGHSTGPCPASSSS
FSSLPQRAGAPNHLPSLPLHSATTTSVAQTKETTPSGSSSGLATTTGTPLNPGTTAPMQG
LANHIQQGAVTTDSSWSQSQPGSPSPGTLSSDNPQLSALLMGKASNKDVTNHDDNNNNNH
GGVNQGATMDNNIKVNNIHPGVHHGGPKPLSERSVASSPLSAMSASTPSPPRCADHHPFT
ANSLTSLISSPSNSGTTGTATTTPQVNGKGLEDSRSPVRVEPTGVSHSRPALAPWSSVSI
YPSSSQVLKACRNLGKNGLSNSSVLLEKCPPPRPPPPPSPSLPKDKLNPPTPSIYLENKR
DAFFPPLHQFCTNPSNPVTVIRGLAGALKLDLGLFSTKTLVEANPDHLVEVRTQLSQPTD
ENWDLSGTRKMWRCQSSQSHTTIAKYAQYQASSFQESLREENEKKKEQEAEAANAESATR
RRKGPFKHIKFGTNIDLSDERKWKLQLQELSKLPAFARVVSAGNLLSHVGHTILGMNTVQ
LYMKVPGSRTPGHQENNNFCSVNINIGPGDCEWFAVPEHYWGIINDFCEKNNINFLMGSW
WPNLEDLYEADVPVYRFIQRPGDLVWLNTGTVHWVQAIGWCNNIAWNVGPLTAYQYKLAV
ERYEWNKLQSVKSIVPMIHLSWNMARNIKVSDSKLFQMIKYCLLRTLKQCQMLRELLQAA
GKELVWHGRTRDEPAHYCSICEVEVFDLLFVTSESNSRKTYVVHCQDCARRGSSNLDNFV
VLEQYKMDDLTQVYDQFTLAAPLPSSS
NT seq 4584 nt   +upstreamnt  +downstreamnt
atgaaatcgtgcggagtgtcgctcgacgttgctgcctctgctactgctcgaagtctcggc
gctgctggtgatgaggaaaataaaatggcggcgggaaaagcgaatgaaatagaagaggac
tttccgaagctaacatcgcaggagagagaaagcttggtcaaaattgacagttcactgttt
ggatttcagaggcttcatgaagatggcgccagaacgaaggccttactgttaaaggctgta
agctgctatgactctgccatcctgaaggcagaagggaaggtagagccagagatgttctgc
cagctgggccacttcaacctcctcctgcaggactatccaaaagcattatctgcataccag
agatactacagtttacagtcggactactggaagaatgctgcctttttatatggccttggt
atggtttacttccattacaacgcatttcagtggtcccctttctccctgtctaggccagtg
cagcccccctcctcagaggcccaggcaggacagaaaagggcgataaaagcgtttcaggaa
gtgctctatgttgaccccagtttctcccgagccacggagatccacatgagactgggcctc
atgtttaaaggcaacaccgattatgagtcaagtctaaagcattttcaactggctttgatt
gactccaacccctgcactttgtccaaagctgaaattcagttccacatcgctcatttatat
gagattcagaagaaattcagagcagcaaaagaagcatatgagagtttactacagacagag
aatcttcctgcacaggtgaaggctactacactgcaacaactgggctggatgcatcacaca
gtggagctgttaggggacaaaggctccaaggacagctatgccatccagtgtctgcagaag
tcgctagaagcagaccctaattctggacagtcctggtacttcctcggcaggtgctactcc
agtattgggaaagtccaggatgccttcatctcctacagacagtccattgacaagtctgag
gccagcgctgatacctggtgctccataggtgtgctgtaccagcagcagaaccagcctatg
gatgcactgcaggcctacatttgtgcagtgcagctggaccacagccacgcagccgcctgg
atggacctgggcacgctctatgaatcctgcgggcagccgcacgacgccatcaagtgttac
atcaacgccacccgcagcaagtcctgcactaacaccgccgccctcacacaccgcattaag
ctgctgcaggctcagttgtgtaaccctcagccaggtagtcttgcgggggggaagggtact
aaaatgcttcctagtattgaggaggcgtggagcctgcccatccccgctgagctcacctcc
agacaggggggcctgaacactgcagcaggcagcccagggtcacagacacagcagcagcag
gcgtctaagtcccaccagagtggtgagggaggccagggccaaacgcacgtctccccccat
cccagccacactgacggtcaggctagccccgccaagagaaaacgcaccgccagcccggct
aagggtgctgtggacctgtggacaaaccacccggtacaacaccagatccccagctggtac
ctaacaccacagaaattacagctcctggatcagctccggaccaaccgggccagtctgaaa
ccaccacagatgcagattctggaccagctggaaaaacagttctccctcatgcagcagcat
caacatcaggtgagacagcaggcagcaggacagttgcggcccaccctacccaacggcccc
tcgctgtccccaaactccctcccctcccctcaccccctctcccggacttcacccgtcagt
caaaccacagcccgtcccccctgtactgctcagccaatggccaacacacctttatcttca
agtccccttgggcagctaggcaatccagaggggggaactgtgggcaataatcgcactccc
ggtctaccgggtgcagggacgttaccgggaggtggcgggagtaatggaaacgtgccttac
ctacagcagaactgtctacctcacaactgcaatgccactagtaccagtaaccccagtacc
cccaccagcaacaacaccagtcacagcagtcatagtaccagtaatgtagaggaggcctgg
aagagccagcaacgtaccaactccactcaggggcttcacaaaggtccaggttcacattcg
gcaggtcccaatggagaacaccctttctcttcatcctcctcccaggccgctggatccggt
gctcaaattctaaatcaggtcggacattctaccgggccctgccctgcctcctcttcctcc
ttctcctctttgccacagagggccggtgcccccaaccacctcccctccttgcccctccac
tccgccaccactacctcagtggcccaaaccaaagagaccacgccttcaggaagcagcagt
ggattggctaccaccacagggacaccgcttaatcctggtaccactgcccctatgcaggga
ttggctaatcacatccagcagggggcggtgaccacagacagctcgtggagccaatcccag
cccggctctccttctccgggcacgctcagttcagacaatcctcaactctcagccttgctc
atgggaaaagccagtaataaggatgttactaaccatgatgataataataataataatcac
ggtggtgttaatcaaggagccaccatggacaataacatcaaggtcaacaacatccacccg
ggtgtccaccacggaggtcccaaacccctgtcggaacgctctgtggcctcctcgcccctc
tcagccatgtccgcctccaccccctcccccccgcgctgtgccgaccaccaccccttcaca
gccaacagccttaccagccttatcagcagcccgtccaacagcggaaccaccggtaccgct
accactaccccacaggtcaacggtaaggggctagaggactctcggagcccagtgagagta
gagcccactggggtgtctcacagcaggccggccctggccccatggtcctcagtctccatc
taccccagctccagccaggtgctaaaagcatgcaggaacctggggaagaacggcctgtcc
aacagcagtgtcctcctagaaaagtgtccccctcccagaccccctccgcccccctcgccc
tcactgccaaaggacaaactcaacccccccacacccagcatctacctggagaataagagg
gatgcgttcttccctccgctccatcagttctgcaccaacccctccaaccctgtcaccgtc
atcagagggctggccggggcgctcaaactggacctgggtctgttctccaccaagaccctg
gtggaggctaacccagaccacctggtggaggtacggacccagctgtctcagcccaccgac
gagaactgggacctgagtggcacaaggaagatgtggcgctgccagagcagccaatcacac
accaccattgccaagtatgcccagtaccaggcctcgtccttccaggagtcactacgggag
gagaatgagaagaagaaggagcaggaggcagaggcagccaatgcagagagtgcgacacgg
aggaggaaagggcccttcaaacacatcaagtttggcaccaacatcgacctgtctgacgag
aggaagtggaagctgcagctgcaggagctcagtaagctgccagcatttgccagagtggtg
tctgctggcaacctgctcagccacgtaggacacaccatcctgggcatgaacactgtccag
ctctacatgaaggtccctgggagcaggacgccaggtcaccaggagaacaataatttctgt
tcagtgaacatcaacattggaccgggggactgtgagtggtttgcagtgcccgaacattac
tggggaatcatcaacgacttctgtgaaaagaacaacatcaacttcctgatggggtcatgg
tggcccaacctggaggacctgtacgaggcagatgtccccgtctaccgcttcatccagcgt
cccggagacctggtgtggctcaacacgggcaccgtccactgggtccaggccatcggctgg
tgcaacaatatcgcctggaacgtaggacctctcaccgcataccagtataagctggcggta
gagcgatatgagtggaataagctgcaaagcgtgaagtccatcgtccccatgatacacctc
tcctggaacatggccaggaacatcaaagtgtccgacagcaagctcttccagatgatcaag
tactgtctgctgcggacattgaagcagtgtcagatgctgcgagagctgctgcaggcggca
ggcaaggagctggtgtggcatggcaggaccagggacgagcccgcacattattgcagcatc
tgcgaggtggaggtgtttgacctgctgtttgtaaccagtgagagcaacagcaggaagaca
tacgtggtgcactgtcaggactgtgcccgtagggggagctctaacctggacaactttgtg
gtgctggagcagtacaagatggacgacctcacacaggtctacgaccagttcacactcgcc
gctcctctgccttcctcctcttga

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