Oncorhynchus nerka (sockeye salmon): 115112017
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Entry
115112017 CDS
T07952
Symbol
prdm6
Name
(RefSeq) putative histone-lysine N-methyltransferase PRDM6 isoform X1
KO
K20795
[histone H4]-lysine20 N-methyltransferase PRDM6 [EC:
2.1.1.361
]
Organism
one
Oncorhynchus nerka (sockeye salmon)
Pathway
one00310
Lysine degradation
one01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
one00001
]
09100 Metabolism
09105 Amino acid metabolism
00310 Lysine degradation
115112017 (prdm6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
one03000
]
115112017 (prdm6)
03036 Chromosome and associated proteins [BR:
one03036
]
115112017 (prdm6)
Enzymes [BR:
one01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.361 [histone H4]-lysine20 N-methyltransferase
115112017 (prdm6)
Transcription factors [BR:
one03000
]
Eukaryotic type
Zinc finger
Cys2His2 PRDM
115112017 (prdm6)
Chromosome and associated proteins [BR:
one03036
]
Eukaryotic type
Histone modification proteins
HMTs (histone methyltransferases)
HKMTs (histone lysine methyltransferases)
115112017 (prdm6)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PRDM2_PR
zf-C2H2
zf-H2C2_2
zf-C2H2_4
SET
zf-C2H2_11
zf-C2H2_jaz
Zap1_zf1
zf-C2H2_15
Motif
Other DBs
NCBI-GeneID:
115112017
NCBI-ProteinID:
XP_029494515
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Position
LG27:complement(38877914..38934233)
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AA seq
563 aa
AA seq
DB search
MLKPGDPSGSAFLKVDPTYMQHWQQLFPQSQLKNGGITQLQPPDRVAVPVESLRQRPNLI
SSTSSSSALTPSSTSSSTPSVSSLAGLSQLSVPQIALFGQTLSSDIVSSDNTNLQAKELC
ISSSFKNDKGSRFKLTSDELDYYLYGQQRMEIIPLNNHTGDHNNRCDMCADNRNGECPMH
GPLHSLRRLVGTSSAAPAVPPPDVPDWLRDLPREVCLCTSTVPGLGYGICAAQRIPQGTW
IGPFAGVPLLLDKLQSGGVRNTRHLWEIYDQEGTLQHFIDGNEPSKSSWMRYIRCARHCG
EQNMMVVQYRSCIFYRACMDIPRGTELLVWYNDSYTSFFGIPLQCIAQDENLNVPTTVME
AMSRQETLQPLSKTGKGFSVALLRSMVFPHSPCSRSFSLMDKGGHTDSGFNQMSSKNQRV
LASPTSTSQLSTEFSDWHLWKCGQCFKTFTQRILLQMHVCTQNPDRPYQCGHCSQSFSQP
SELRNHVVTHSSDRPFKCGYCGRAFAGATTLNNHIRTHTGEKPFKCERCDRSFTQATQLS
RHQRMPNECKPISGESSESIEVD
NT seq
1692 nt
NT seq
+upstream
nt +downstream
nt
atgttaaaacccggtgaccctagcggatctgctttcttgaaagtggacccgacgtacatg
caacactggcagcagctcttccctcaaagccagttgaagaatggaggcattacgcagctg
cagccgccggacagggtagctgttccggtggaaagtctccgtcagcggccgaacctgatc
tcctccacatcatcatcgtcggctttaacaccttcctccacatcttcatcgactccatcc
gtttcatcattggcaggtttatctcaactatctgtgccacaaattgcactttttggacaa
actctctcttctgacattgtctcgtcagacaacaccaacctccaagcgaaagaactttgt
atatcctccagctttaagaatgacaaagggtccagatttaaactgacctccgatgagtta
gactactacctctacggacagcagagaatggagattatcccattgaacaatcacaccggc
gaccacaacaatcggtgtgacatgtgtgcagataaccgtaacggagagtgccccatgcac
gggcccctgcactcactgcggcgcttggtggggacaagcagtgcagcgccggccgtgccg
cccccagatgtccctgactggctgcgggacctgccccgtgaggtgtgcctctgcactagc
accgtgcccggccttggctacggcatctgtgccgcccagcgtatcccacagggcacctgg
atcggcccctttgcgggagtccccctcctcctggataagttgcagtcaggaggggtgcgg
aacacaaggcacttatgggagatctatgaccaggaagggacgttacagcactttattgat
ggcaatgagccgagcaagtcgagctggatgagatacattcgctgtgcacggcactgtggc
gagcaaaacatgatggtggtccagtacagatcatgtatattctaccgggcatgtatggac
attccaagaggaacagaactccttgtctggtacaatgacagctacacctccttctttggc
atccctctacagtgcattgcacaggatgaaaacttgaatgtaccaaccacagttatggag
gccatgagcagacaagagacgttgcagccgctcagtaaaacgggcaaaggtttctcggtg
gccctgctgcgctccatggtcttcccccactcgccctgctccagaagcttctccctgatg
gacaaaggtggccacacggactccggcttcaaccagatgagctctaagaaccagcgagtc
ctagccagccccacctccaccagccagctgagcaccgagttcagtgactggcacctctgg
aagtgcggccagtgctttaagacgttcacgcaacgcatcctgctccagatgcatgtgtgc
acacagaacccagacagaccttaccagtgtggacactgctcccagtccttctcccagccg
tcggagctgcgcaaccatgtcgtcactcactccagcgaccggcccttcaagtgtggctac
tgtggccgggcatttgcaggagccaccactctcaacaaccacatccggacacacactggg
gagaagccattcaagtgcgagaggtgcgacaggagcttcacgcaggccacccagctcagc
agacaccagcggatgcccaacgagtgcaagcccatcagcggcgagagcagcgaatcaatc
gaggtggattag
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integrated database retrieval system
