Oncorhynchus nerka (sockeye salmon): 115113249
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Entry
115113249 CDS
T07952
Symbol
ltbp1
Name
(RefSeq) latent-transforming growth factor beta-binding protein 1 isoform X1
KO
K19559
latent transforming growth factor beta binding protein 1
Organism
one
Oncorhynchus nerka (sockeye salmon)
Pathway
one04350
TGF-beta signaling pathway
Brite
KEGG Orthology (KO) [BR:
one00001
]
09130 Environmental Information Processing
09132 Signal transduction
04350 TGF-beta signaling pathway
115113249 (ltbp1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04990 Domain-containing proteins not elsewhere classified [BR:
one04990
]
115113249 (ltbp1)
Domain-containing proteins not elsewhere classified [BR:
one04990
]
EGF-like domain-containing proteins
hEGF / cEGF domain-containing proteins
115113249 (ltbp1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EGF_CA
cEGF
TB
EGF
hEGF
EGF_3
FXa_inhibition
Plasmod_Pvs28
EGF_MSP1_1
EGF_TEN
Motif
Other DBs
NCBI-GeneID:
115113249
NCBI-ProteinID:
XP_029496556
LinkDB
All DBs
Position
LG28:complement(31606929..31750171)
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AA seq
1717 aa
AA seq
DB search
MAWIRWDLFFSIGLFISPAFVSTDQSGFRRYYVLQPGPSGTDRVHVSSISSRSGATGQPH
AYNVELSASYSGQVRTRRMGNQANPIPLRQDTPFTQHQQVIRRTSHNVQQSHQMKMSGVN
VCGGQCCHGWSKASGSQQCTKPNCLPQCQNGGMCLRPQLCVCKSGSKGKACEQNTMPTSS
YPAQPGNGHTKGHSNGHTKGHNVVPQRPIPQQGYIPGPVPVSNMAQMTLTVKQSPHLVRP
QQIQPGSQQFVRKPKYYHTRTTHTQTHVQHQPDRPIPLTLGHNPIHVGNHTGRIKVVFTP
TICKVTCTGGRCQNNCELGNTTTIVSENGHAADTLTAPNFRVVVCHLPCMNGGKCSARDK
CQCPPTFTGKFCQMPVQNGNGQQRQNGQQQMSQIHSTHTLPLTFSNGQNPVKYAPSIVNI
HVKHPPEASVQIHQVSQLDANGQKVKGNGQNGHSQTQSHYTYHHSESSQKIQQQGHNIIY
PNLQSYVPQYQPVSNSQLGRCFQETTGTQCGKALPGLSKQEECCQSIGTSWGFHKCQKCP
KPSIPLTAGGSRQAMDCPQGYKRINNSHCQDLNECQLQGVCPNGDCLNTMGSYRCSCKAG
FIPDPTLSTCIPDTPAVHEEKGACFRLVSSGKQCLHPVPAQLSKQLCCCSVGKAWGPRCD
KCPLPGTAKFKEICPGGMGYTVTGSYKPKPPKLPSQPETLNKPMITHQEPVAPPLPFPTP
EKPVEALSVTERQLPSIPVATDAPEQELVILEATSSRPVVEVEAGQPQLSPGVSTMRMEP
AYPEVVEKTSPPAPALILPSNAGQDIAPTQSAEVDECQVNPHICGQGICYNTVEGYTCIC
REGYQMDETHTTCVDVDECLESASLCSNGRCRNTPGSFLCVCQPGFMTDEEGTSCIDLNE
CLNSHACPEDGFCVNNVGSYICRHCDGGFRMSPTGQCEDIDECLDMGVCPSGMCINLLGS
YECDSCPEGFQGQGGQCVDVDECLHQSTCANGKCSNFEGYFVCSCNDGFTLSLDGQSCED
VDECQDEQVCTRGHCQNTVGSYLCNCGPGFRASPAGDQCDDVDECQELTMPCDSVGQCVN
NMGSYRCSCPQGYQQINGTSCLDVDECLDDPELCSPHGECLNAEGSFYCVCERGFAAGQD
THTCEDMDECSDDTRCVGGSCENSQGSYRCQCDTGYRLQPDTDTCLDIDECAELGQSICG
AWLCENTEGSYRCVVDCPPGHDRGPEGICVDIDECNVNATVCGNHGFCENTVGSFRCLCD
RGYQESQEGLGCVDVNECELLSGVCGEALCENVEGSFLCMCSDEDQEYNQMTAKCSPAPT
ASSVERKECYYNLNDENLCENVLTSSVTMEECCCTLGAGWGDNCEVHPCPVQGTDQFSQM
CPAGRGNVPTGDAVFGVTAAESYKDADECALFGQEICKDGFCLNSPGSYECYCKTGLYYD
EVKLQCRDIDECQDESSCVGGECLNTQGSYMCFCTRPMVLDSDNKRCVIAPEVAEQHSVQ
TDYQGICWQTVTGTRKTCTKPLANRKTTFTECCCLHGEAWGMDCALCPLKNTEDYASMCN
VPMREGQGRPYGRDALVADPIQEYEVNLDYEPRPDQPGALPLYEDEEIAYDAFEGLRAEE
CGILNGCENGRCVRVQEGYTCDCFDGYTLDMSRMACVDVNECSELNNRMSLCKNAKCINT
EGSYKCVCLPGYTPSEQPNYCVAREQVAAAAVRTERE
NT seq
5154 nt
NT seq
+upstream
nt +downstream
nt
atggcttggatcagatgggacctattcttttctataggtttattcatttcaccggcattt
gtctccacggatcagagtggctttaggagatactacgtgttgcagccaggaccgagcggg
acggacagagtacatgtgagttccatctcttcgcgctccggtgccactggacagccccat
gcctacaatgtggagctctcggccagttacagtggccaggtccgaacccgtaggatgggt
aaccaagcgaacccgatcccgcttcgccaggacacaccgtttactcagcatcagcaagtc
attcggcgcaccagccacaacgttcaacagagtcaccaaatgaaaatgtcaggggtgaat
gtctgtggagggcagtgctgtcatggatggagtaaggcctctggatcgcagcagtgcaca
aagcccaactgtctgccccagtgccagaatggaggaatgtgtctgaggccccagctctgt
gtctgcaagtcaggctccaagggcaaggcatgtgaacagaacaccatgcccacctcctcc
tacccagcgcagccagggaacggccacaccaagggacacagcaatgggcacaccaaggga
cacaacgtagtgccccagcggcccatcccccagcagggttatattcctgggccagtccct
gtcagcaacatggcccagatgaccctgactgtcaagcaatccccccaccttgtccggccc
cagcaaatccagcctggtagccagcagtttgtccggaagcccaagtactaccacacacga
accacacacacacagacacatgtccagcatcagcctgacagacccattcccctgacattg
ggacacaaccccatccacgtggggaaccacacgggacggatcaaggtggtcttcacaccc
accatctgcaaagtgacctgcacaggggggcggtgccagaacaactgtgagctgggcaac
accaccaccatcgtcagtgagaacggccatgccgcagacaccctcactgcccccaacttc
agagtagtggtatgccatcttccctgcatgaatggtggaaagtgcagtgccagggacaag
tgtcagtgcccgcctaccttcacagggaagttctgtcagatgcctgttcagaacgggaat
gggcagcagcgccagaatggacagcagcagatgtcccagattcactccactcacactctg
ccgctcaccttcagcaatggacagaaccctgtgaaatatgcccccagcatcgtgaacatc
cacgtgaagcatcccccagaggcctcggtgcagatccaccaggtctcccagctggatgcc
aatgggcagaaggtgaaaggcaatgggcagaatggccactcccagacccagtcccactac
acctaccaccactcagagagcagccagaagatccagcagcaaggacacaacatcatctac
cccaacctgcagagctacgtaccccagtaccagcctgtctccaacagccagctgggacgc
tgcttccaagagaccactggcacacagtgtggcaaggccctccctggtctcagcaagcag
gaggaatgctgtcagagcatcggaacatcctgggggttccacaaatgccagaagtgccca
aaaccatctattcctctgacagctggaggatccagacaggcgatggactgcccccaggga
tacaagcgcatcaacaactcccactgccaagatcttaatgagtgccagctgcagggcgtg
tgtcccaacggagactgtctgaacaccatgggtagctacaggtgcagctgtaaggccggc
ttcatccctgaccccaccctctccacctgtatccctgacacccctgccgtccacgaggag
aaaggggcttgtttccgattggtcagttcggggaagcagtgtttgcacccggtgcctgct
cagctgagcaaacagctgtgctgctgcagtgtgggcaaggcctggggcccgcgctgcgac
aagtgccccctgccaggaacagctaaattcaaggagatatgccctggtgggatgggctac
actgtcacaggctcttacaagcccaaaccacccaaacttcccagccaacctgagaccctc
aacaagccaatgatcacccaccaagagcctgtggccccgcctctgcccttcccaacaccc
gagaaaccagtggaggccttgagcgtcactgagagacagcttccctccattccagttgcc
acagatgcacctgagcaggagctggttattctggaggctactagtagtaggccagtagtt
gaggtcgaggctggccagccacagctctctcccggtgtctctaccatgaggatggagccg
gcctacccagaggttgtggagaaaacgtccccccctgctccagccctgatcctcccctcc
aacgctggccaggacatcgccccgactcagtcagcagaggtggatgagtgccaggtcaac
cctcacatctgtggccaggggatctgctacaacactgtggagggttatacctgcatctgt
agagagggctaccagatggatgagacacacaccacctgtgtcgatgttgatgaatgcctg
gagtctgcatcactgtgctccaacggccgctgcaggaacactcctggcagcttcctgtgt
gtgtgccaaccaggcttcatgacagatgaggagggaaccagttgcattgatttaaacgag
tgtctgaactcccacgcttgtcctgaggatggcttttgtgtcaacaatgtgggttcctac
atctgtcggcactgtgacggcggcttcaggatgagcccaacaggccagtgtgaagatata
gatgagtgtctggacatgggtgtgtgtccatccggcatgtgcatcaacttgctgggctct
tatgagtgtgattcgtgtccagagggcttccagggccagggaggacagtgtgtcgatgta
gatgaatgcctgcaccagtcaacttgtgccaatgggaagtgctccaactttgagggatat
tttgtctgctcgtgtaacgatggattcacgctcagcctagatggacaatcatgtgaagat
gtggatgagtgccaggatgagcaggtgtgtaccagggggcactgccagaacactgtgggt
tcttacctgtgtaactgtgggccgggctttagggcctccccggcgggggaccagtgtgac
gatgtggatgagtgccaggagctgaccatgccctgtgacagtgtgggccagtgtgtcaac
aacatgggctcctaccgctgcagctgcccccagggctaccagcagatcaacggcaccagc
tgcctagatgttgacgagtgtctggacgacccggagctgtgttccccacacggggagtgt
ctcaacgccgagggctccttctactgtgtctgtgagagaggcttcgctgcaggccaggac
acacacacctgtgaagatatggatgagtgctcggatgacaccaggtgtgttggcggctcc
tgtgagaacagccagggttcctacagatgccagtgtgacactggctaccgcctgcagcca
gacactgacacatgcctggatatcgatgagtgtgcagagttgggccagagtatctgtggg
gcgtggctctgtgagaacacagagggctcctataggtgtgtggtggactgcccccccgga
cacgaccgtggcccagaaggcatctgtgttgatattgatgagtgcaacgtcaacgccacg
gtgtgtggtaaccacggcttctgtgagaacacggtcggttccttccgctgcctgtgtgac
cggggctaccaggagtcccaggagggcctcggctgcgtggatgtgaatgagtgtgaattg
ctgagcggtgtgtgtggcgaggccctgtgtgagaacgtggagggctcgttcctgtgtatg
tgttccgacgaggaccaggagtacaaccagatgaccgccaagtgcagtcccgctcccaca
gcctcgtcagtagagaggaaggagtgttactacaacctcaatgatgagaacctgtgtgag
aacgtgctgaccagcagtgtcaccatggaggagtgctgctgtacgctgggggcaggctgg
ggggacaactgtgaggtgcacccctgccccgtccagggcactgatcagttttcccagatg
tgtccagctgggagaggcaatgtacccactggtgacgctgtgttcggagtgaccgcagcc
gagagttataaagatgcagatgaatgtgcgttgtttggccaggagatctgtaaggatggt
ttctgcctcaacagcccagggagctacgagtgttactgtaagactggcctgtactacgac
gaggtcaagctgcagtgcagagacatcgatgagtgtcaggatgagtcgagctgtgtgggg
ggagagtgtttgaacacacagggctcctacatgtgtttctgtacccgccccatggtgttg
gactctgacaacaagcgctgcgtgatcgcccctgaagtggctgagcaacactcggtgcag
actgactaccagggtatttgctggcagacggtaacgggcacccggaagacttgcaccaag
cccctagccaacagaaagaccaccttcacagagtgctgctgtctgcatggagaggcctgg
ggcatggactgtgccctttgccccctgaagaacacagaggactatgcctccatgtgtaac
gtgccaatgagggaaggacaggggcgtccgtatggtcgcgacgcccttgtggctgatccc
atccaggagtatgaggtcaacttggactatgaacctcgccccgaccagcctggtgccctg
cccctgtacgaggatgaagagatcgcgtacgacgcgtttgagggcctgagagcggaagag
tgtggcattctgaacggctgtgagaacgggcgttgcgtgcgagtacaggagggctacacc
tgcgactgcttcgacggatacaccctggatatgtcccgcatggcgtgtgtggatgtgaat
gaatgttccgagctcaacaaccggatgtccctctgcaagaacgccaaatgtatcaacacg
gaaggatcctacaagtgtgtgtgcctgccaggatacaccccctctgagcagcctaactac
tgcgtggccagggaacaagtggcagcagcagcagtgcgcacagagagggagtga
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