KEGG   Oncorhynchus nerka (sockeye salmon): 115117991
Entry
115117991         CDS       T07952                                 
Name
(RefSeq) TNF receptor-associated factor 6-like
  KO
K03175  TNF receptor-associated factor 6 [EC:2.3.2.27]
Organism
one  Oncorhynchus nerka (sockeye salmon)
Pathway
one04010  MAPK signaling pathway
one04120  Ubiquitin mediated proteolysis
one04140  Autophagy - animal
one04144  Endocytosis
one04620  Toll-like receptor signaling pathway
one04621  NOD-like receptor signaling pathway
one04622  RIG-I-like receptor signaling pathway
one05132  Salmonella infection
one05168  Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:one00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04120 Ubiquitin mediated proteolysis
    115117991
 09130 Environmental Information Processing
  09132 Signal transduction
   04010 MAPK signaling pathway
    115117991
 09140 Cellular Processes
  09141 Transport and catabolism
   04144 Endocytosis
    115117991
   04140 Autophagy - animal
    115117991
 09150 Organismal Systems
  09151 Immune system
   04620 Toll-like receptor signaling pathway
    115117991
   04621 NOD-like receptor signaling pathway
    115117991
   04622 RIG-I-like receptor signaling pathway
    115117991
 09160 Human Diseases
  09172 Infectious disease: viral
   05168 Herpes simplex virus 1 infection
    115117991
  09171 Infectious disease: bacterial
   05132 Salmonella infection
    115117991
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04131 Membrane trafficking [BR:one04131]
    115117991
   04121 Ubiquitin system [BR:one04121]
    115117991
Enzymes [BR:one01000]
 2. Transferases
  2.3  Acyltransferases
   2.3.2  Aminoacyltransferases
    2.3.2.27  RING-type E3 ubiquitin transferase
     115117991
Membrane trafficking [BR:one04131]
 Endocytosis
  Clathrin-mediated endocytosis
   Ubiquitin E3 ligases
    115117991
Ubiquitin system [BR:one04121]
 Ubiquitin ligases (E3)
  Single Ring-finger type E3
   TRAF proteins
    115117991
SSDB
Motif
Pfam: TRAF-mep_MATH MATH_2 zf-TRAF zf-TRAF_2 Phage_GP20 Sina_ZnF Pericardin_rpt
Other DBs
NCBI-GeneID: 115117991
NCBI-ProteinID: XP_029502373
LinkDB
Position
Unknown
AA seq 324 aa
MFLFQLESHYDTDCPKAPIACTFSTFGCREMMQRNDLAQHMQEFTQMHMRCMAEYLHRHS
LTGYTQPPSSEDRGAAAAELGAHPGATSSGAPCQCCGELQTMRETTQQLEGRLVRQDHQL
RELSIQAGLVAELRRKVTSLEENLKELEAKQCQGVYVWPLEGFSGYLRTQAAGQPVVVHS
PGFYTGRPGYKLCLRLHLQTPSAQRCSNYISLFVHTMQGEFDGQLSWPFQGTIRLAVLDQ
GPDGQHHVEVMETKPDLQAFQRPTIQRNPKGFGYVTFLHLMELQQRGFVHDDTLLVRCEV
TPRFDTALRREGAAMQPRGPEASL
NT seq 975 nt   +upstreamnt  +downstreamnt
atgtttttgtttcagttggaatctcactatgacacagactgtccgaaggctccgattgcc
tgtaccttcagcacttttggatgtcgagagatgatgcagcgcaatgacctggcgcagcac
atgcaggagttcactcagatgcacatgcgctgcatggctgagtacctgcacaggcacagc
cttaccgggtacacccagccaccttcttctgaggaccgaggggctgccgccgcagagctg
ggggcacacccaggagctaccagcagtggcgccccctgccagtgctgcggggaactgcag
accatgcgggagaccacccagcagctggagggacgtctagtgcggcaggaccaccagcta
cgtgagctgagcattcaggcggggctggtggcggagctccgtcgtaaggtcacctcgctg
gaggagaacctaaaggagctggaggccaagcagtgccagggtgtgtacgtgtggcccttg
gagggcttctcgggctacctacgtacccaggctgccggacagcctgttgtggtgcacagc
ccgggcttctacacgggccggccgggctacaagctgtgtctgcgtctccacctccaaacg
ccctcggcacagcgctgctccaactacatctcactgttcgttcacaccatgcagggggaa
tttgatgggcagctgtcgtggcccttccaaggcaccatccggctggccgtgctggaccag
gggcctgatggccagcaccatgtggaggtgatggagaccaagcccgacctgcaggccttc
cagaggcccaccatccagaggaaccccaagggctttggctacgtcacctttctgcacttg
atggagctacagcagcgggggtttgttcacgacgacacgctgctggtgcgctgcgaggtg
acgccgcgcttcgacaccgccctgaggcgcgagggggcggccatgcagcccagagggccc
gaggcctcgctgtga

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