Oncorhynchus nerka (sockeye salmon): 115129341
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Entry
115129341 CDS
T07952
Name
(RefSeq) platelet-derived growth factor receptor beta-like isoform X1
KO
K05089
platelet-derived growth factor receptor beta [EC:
2.7.10.1
]
Organism
one
Oncorhynchus nerka (sockeye salmon)
Pathway
one04010
MAPK signaling pathway
one04020
Calcium signaling pathway
one04510
Focal adhesion
one04518
Integrin signaling
one04519
Cadherin signaling
one04540
Gap junction
one04810
Regulation of actin cytoskeleton
Brite
KEGG Orthology (KO) [BR:
one00001
]
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
115129341
04020 Calcium signaling pathway
115129341
09133 Signaling molecules and interaction
04518 Integrin signaling
115129341
04519 Cadherin signaling
115129341
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
115129341
04540 Gap junction
115129341
09142 Cell motility
04810 Regulation of actin cytoskeleton
115129341
09180 Brite Hierarchies
09181 Protein families: metabolism
01001 Protein kinases [BR:
one01001
]
115129341
09183 Protein families: signaling and cellular processes
04090 CD molecules [BR:
one04090
]
115129341
Enzymes [BR:
one01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.10 Protein-tyrosine kinases
2.7.10.1 receptor protein-tyrosine kinase
115129341
Protein kinases [BR:
one01001
]
Receptor tyrosine kinases (RTK)
PDGFR family [OT]
115129341
CD molecules [BR:
one04090
]
Proteins
115129341
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PK_Tyr_Ser-Thr
Ig_PDGFR_d4
Pkinase
Ig_3
I-set
Ig_2
VEGFR1-3_N_Ig-like
ig
Ig_VEGFR-1-like_5th
V-set
VEGFR-1-like_Ig-like
Psg1
Motif
Other DBs
NCBI-GeneID:
115129341
NCBI-ProteinID:
XP_029515438
LinkDB
All DBs
Position
LG5:complement(8312155..8357143)
Genome browser
AA seq
1098 aa
AA seq
DB search
MRSVRVSTLHLTALLTALLHFCPEYRCLEISPSNSEVVMTPGDSMIFTCSSWGTVGWRFK
RNDDIPYFGVENQNTTSVLILDNVTWRHTGVYVCAEALTDEAREVAVFVPDPEVWFIESS
HGMVTKTSEEGTIPCVVTNPQINVTLYETDSNMHLKGVYIPSEGYRASLEDRTYVCRGEL
KGEEKESQEFYVLSIVVPETIDAYINASKTVLKQGEPLTVNCTVHGVELVFFSWDYPNRD
VDFIEPLTDILSSQSMRSCLTVSKATLANAGQYVCHVHESVQDQRATANVNITVLERGFV
ELRSVQERNVSAQLHQNVELRVEIESYPAPRVHWTKDNATVNGDNTVITRQEHETRYVSI
LTLVRIRTEQKGLYTVLVANGDDTKEVTFDLEVKVPPQITDLSDHHLPGKRHAVTCVAEG
VPSPSIQFFSCDSMLKISPRCSNRSTVWQPLVSDPETLSIQTNISFNESRKVGQVRSQVT
FHKPQQVTVRCEASNEEGVSRRDVKLVSSTLFSQVAVLAAVLPLVVILITSIIILIAVWR
KKPRYEIRWKVIESVSLDGHEYIYVDPIHLPYDLAWEMARDSLVLGRTLGSGAFGRVVEA
TAYGLSHSQSSTKVAVKMLKSTARRSETQALMSELKIMSHLGPHLNIVNLLGACTKQGPL
YLVTEYCRYGDLVDYLHRNKHTFLQYYAEKNQEDSGCRVSGGSTPLSQRKGYVSFGSEFD
GGYMDMSKDEPTVYVPMQELKDTIKYTDIQPSPYESPYQHHLYQEQDQTTVDSALVISDC
PTLSYSDLIGFSYQVAKGMEFLASKNCVHRDLAARNVLICEGKLVKICDFGLARDIMHDS
NYVSKGSTFLPLKWMAPESIFHNLYTTLSDVWSYGILLWEIFTLGGAPYPDLPMNELFYS
ALKRGYRMAKPNHATDEVYEVMQKCWDEKYERRPEFSFLVHTMGNMLTDSYKKRYCQVND
EFFKRDHPAVVRTKPRLSSHFPTPALTPSTAPAIPQDTNPYPLTGDFRSEADGEEASYND
YIIPIPDPKPEEEVCSEANDMPTKSLASSRALEDEEADSISQETVEADTIPEEKYLHANQ
ALIPLESSGTPEVEDSFL
NT seq
3297 nt
NT seq
+upstream
nt +downstream
nt
atgaggagtgtcagagtgtccactctccatctgacagccctactaacagctcttttgcac
ttctgccctgagtaccgttgcttggagatctcccctagcaacagcgaggtcgtcatgaca
ccgggcgactccatgatcttcacctgttctagctgggggacagtcggatggaggttcaag
cggaatgacgacattccctattttggagtggagaaccagaacacaaccagtgttctcatt
ctggacaacgtgacgtggagacacacaggagtgtacgtctgtgccgaggctttgacggac
gaggctagagaggtggcagtctttgtgccggaccctgaagtgtggttcattgagagctcc
cacggcatggtgaccaagaccagcgaggaggggaccatcccctgtgtggtcaccaacccc
cagatcaacgtcaccctctacgagacggacagtaacatgcacctaaaaggggtctacatc
cccagtgagggctacagggcatccctggaggacaggacctatgtgtgtcgtggggagctg
aaaggagaggagaaagagtcccaggaattctacgtcttaagtattgttgtcccggagaca
atcgacgcctacatcaatgcgtctaagacggtgctgaagcagggcgagcccctgacagtg
aactgcacggtgcatggagtggagctggtcttcttctcctgggactaccccaacagagac
gtggacttcatcgagccattgacagacatcctgtcgtcccagagcatgcgctcctgcctc
accgtctctaaggcgacgctggccaacgcagggcagtacgtgtgtcacgttcacgagagt
gtccaggaccagagggccaccgccaacgtcaacatcaccgtcctcgagcgaggcttcgtg
gagctgaggtctgtccaggagcgtaacgtctcggcccagctgcaccagaatgtagagctg
agggttgagatcgagtcctaccctgctccacgtgtccactggaccaaagacaacgccacc
gtcaacggagacaacaccgtcatcaccaggcaggagcacgagaccaggtacgtcagcata
ttgaccttggtgaggatcaggacggaacagaagggactttacactgttctcgtcgccaac
ggagacgacaccaaggaagtgacatttgatctggaggtcaaagttccccctcagataaca
gacctgtcggaccaccacctcccagggaagaggcatgcagtgacctgtgtggccgagggg
gtcccctccccatccatacagtttttcagctgtgacagcatgctcaaaatctctcccagg
tgcagtaaccggagcacagtgtggcagcccctggtgtcagaccctgagaccctgagtatc
cagaccaacatcagtttcaatgagagccgtaaggtgggccaggtccgcagccaggtcacc
ttccacaagccccaacaggtgaccgtccgctgtgaggccagcaacgaggaaggagtcagc
aggagagacgtcaaactggtgtccagcactctgttctcccaggtggcagtgttggctgcg
gttctacccctggtggtcatcctcatcacctccatcatcatcctcatcgctgtgtggagg
aagaagcctcgctatgagattagatggaaggtgatagagtcagtgagtctggatggccat
gagtacatctacgtcgaccccatccacctgccctacgacctggcctgggagatggctcga
gacagcctggtgctgggtcgtactcttgggtccggggcatttggcagggtggtcgaggcg
actgcctacggtctcagtcattcccagtccagcacgaaggtggcagtaaaaatgctcaaa
tccacagccaggaggagtgagacccaggctctgatgtcagagctgaagatcatgagccac
ctggggcctcacctcaacatcgtcaacctgctgggagcctgcaccaaacagggtcctctc
tacctggtgacggagtactgtcgctatggagacctggtggactacttacacaggaacaag
cacacgttcctgcagtactacgctgagaagaaccaggaggactctggttgccgcgtctct
ggagggagcacccctctcagccagaggaaaggctacgtgtcgtttggcagtgagtttgac
ggtggctacatggacatgagtaaggacgagcccacggtgtacgtccccatgcaggagctt
aaagacaccatcaaatacactgacatccaaccttctccatatgagtcgccctaccagcac
cacctttaccaggaacaagaccagaccacagtggacagtgccctggtcatcagtgactgc
cctaccctcagctattctgacctcattggcttcagctaccaggtggccaagggcatggag
ttccttgcctccaagaactgtgtccatcgtgacctggccgccaggaacgtgttgatctgt
gaggggaagctggtgaagatctgtgactttggtctggccagagacatcatgcacgactcc
aactacgtctccaaaggcagcacgttccttcctcttaagtggatggccccagagagtatt
ttccataacctgtacaccaccctgagtgacgtgtggtcctatggcatcctgctctgggag
atcttcaccctgggaggagccccctaccctgatctgcccatgaatgagctgttctacagt
gccttaaagagaggatatcgcatggccaaacctaaccacgccaccgatgaagtttatgaa
gtcatgcagaagtgctgggatgagaagtacgagagaaggccagagttctcttttctggtg
cacacaatggggaacatgctcacagacagctataaaaagagatactgccaggtcaacgat
gagttcttcaagcgtgaccacccagccgtggtccgcaccaaacccaggctctcctctcac
ttccccactccggccctaaccccgtccaccgcccctgccatcccccaggacacaaacccc
taccccctcactggggacttcagatccgaggcagatggtgaggaagcttcctacaacgac
tacatcatccccatcccagaccccaagcctgaggaggaagtctgctccgaggctaacgac
atgcctacgaaaagcctcgcaagttctcgggctctggaggacgaggaggctgattccatc
tcccaggaaacagtggaggcagacaccattccagaggagaaatatctccatgccaaccag
gccctgattccactggagtcctctggaacaccggaagtggaagacagcttcctgtaa
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