Oncorhynchus nerka (sockeye salmon): 115129947
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Entry
115129947 CDS
T07952
Name
(RefSeq) short transient receptor potential channel 3-like
KO
K04966
transient receptor potential cation channel subfamily C member 3
Organism
one
Oncorhynchus nerka (sockeye salmon)
Brite
KEGG Orthology (KO) [BR:
one00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
one04040
]
115129947
Ion channels [BR:
one04040
]
Voltage-gated cation channels
Transient receptor potential channel (TRP)
115129947
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GFIT
Motif
Pfam:
TRP_2
Ion_trans
PKD_channel
Ank_2
Ank
Ank_4
Ank_5
YVC1_C
Motif
Other DBs
NCBI-GeneID:
115129947
NCBI-ProteinID:
XP_029516602
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Position
LG5:complement(20820821..20875419)
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AA seq
872 aa
AA seq
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MFAKVKALHRGSNHDVVFSVSARKRAADLELPAQRRMTGAREKGRRPAMRGPAFMFNDHT
TSMTAEEERFLDAAEYGNIPVVRKMLEESTTLNVNCVDYMGQNALQLAVGNEHLEVMELL
LRRDNLARIGDALLLAISKGYVRIVEAILAHPSFQASERLTRSPCELQDDDFYSYDEDGT
RFSPDITPIILAAHCQKYEVVHMLLLKGARIERPHDYFCKCPECAEKQGRDAFSHSRLRI
NAYRGLASPAYLSLSSEDPVLTALELSNELTKLANIEKEFKNDYRKLSMQCKDFVVGVLD
LCRDTEEVEAILNGDVTAEKEAGKGLRSLLSRVKLAIKYEVKKFVAHPNCQQQLLTIWYE
NLSGLREQTIVVKCLVVVAVAFGLPLLAMGYWFAPCSRLGNVLRSPFMKFVAHAASFIIF
LCLLLFNASDRFQGISTMPNVTVTDHPMQIYRVKTTEFSWTEMLIMVWVTGMMWSECKEL
WTEGPREYMQQLWNVLDFGMLSIFIAAFTARFFAFLQATRAQQYVNEKIHTTDLSLVTLP
PEVKYFTYARDKWLPSDPQLISEGLYAIAVVLSFTRIAYILPANESFGPLQISLGRTVKD
IFKFMVLFIMVFLAFMIGMFILYSYYLGAKVNPAFTTVEESFKTLFWSIFGLSEVSSVVL
KYNHKFIENIGYVLYGIYNVTMVVVLLNMLIAMINSSYQEIEDDADVEWKFARSKLWLSY
FDNGKTLPPPFSIVPTPKSFYHHIRWIVGMLHCRQRSVKKDLELGLDSSKSRLNLFTQSN
LRIAESHSILNQPTCYQQIMKRLIKRYVLKAQVDKENDEVNEGELKEIKQDISSLRYELL
EDKSQATEELSLLIQKLSDKLNLGPTTRLPYK
NT seq
2619 nt
NT seq
+upstream
nt +downstream
nt
atgttcgcaaaagtcaaggctcttcacagaggaagtaaccatgatgttgttttctccgtc
tctgcaaggaaaagggcggcggaccttgagctccccgcccagcggcggatgacaggggcg
cgggagaagggtcgtcgaccagcgatgcgtgggccggccttcatgttcaacgaccacacc
accagcatgaccgccgaggaggagcgctttctggacgccgccgagtatggcaacatccct
gtggtccgcaagatgctggaggagtccaccacgctcaatgtcaactgtgtggactacatg
ggccagaatgcattgcagcttgcggtgggcaacgagcatctggaggtgatggaactgctc
ttgcggagggacaacctggcacgcatcggtgacgccttactcctggctatctcaaaaggg
tatgttaggatcgtggaagctatcttggcccatccatccttccaagccagcgagcgactg
acgcggagtccgtgtgagctgcaggacgatgacttctactcgtatgacgaggatggcaca
cgcttctcgcccgacatcacccccatcattctggctgcacactgccagaagtacgaggtg
gtacacatgctgctgttgaagggcgctcgcattgagcggccacatgactacttttgcaag
tgcccagaatgcgccgagaaacagggcagagacgctttcagccactcacgtttgcgcatc
aatgcctaccggggcctggctagcccggcgtacctttcgctgtctagcgaggacccggtg
ctcaccgcgctggagctcagcaatgaactgaccaagttggccaacatcgagaaggagttc
aagaatgactatcgcaagctgtctatgcagtgtaaggactttgtagtgggagtgctggac
ctctgtcgggacacggaggaagtggaagccattttgaatggagatgttactgctgagaag
gaggcggggaagggccttcgctctctcctgagcagggtcaaactggccatcaagtacgag
gtgaaaaagtttgtggcccaccccaactgccagcagcagctgctgacgatctggtatgag
aacctttcgggcctgagggagcagaccatcgttgtgaagtgcctggtggtggtggcggtg
gcctttggtctgcccctactggccatgggctactggttcgctccctgcagtcggctggga
aacgtcctgcgcagccccttcatgaagtttgtggcccatgccgcctccttcatcatcttc
ctgtgcctgctgttgttcaacgcatcagaccgcttccagggcatcagcaccatgccaaac
gtgacagtcactgaccaccccatgcagatctaccgggtcaagaccaccgaattcagctgg
accgagatgctcatcatggtctgggtcacagggatgatgtggtcggagtgtaaggagctg
tggaccgagggccccagggagtacatgcagcagctgtggaacgttctggacttcggcatg
ctttccatcttcattgccgctttcaccgctcggttctttgccttcctccaggccaccaga
gcccagcagtacgtcaacgaaaagatccacaccaccgacctctccctagtgaccctaccc
ccggaggtcaaatactttacctacgcaagggacaagtggctgccgtcagacccccagctg
atctcagaagggctgtacgccatcgctgtggtgctgagcttcacacgcatcgcttacatt
ctgccggctaatgagagctttggaccactccagatctccctgggccgcacggtcaaagac
atcttcaagttcatggtcctgttcatcatggtcttcctggcgttcatgatcggcatgttc
atcctctattcttactacttgggtgccaaggtcaacccggccttcaccacggtggaggag
agcttcaagactctgttctggtctatatttggactgtccgaggtgtcctctgtggtgctc
aagtacaaccacaagttcatcgagaacatcggctatgtgctctatggaatctacaacgtg
accatggtggtggtgttgctcaacatgctgatcgccatgatcaacagctcctatcaagaa
atcgaggatgatgcggacgtggagtggaagtttgcacgctccaagctatggctgtcgtac
tttgacaacggcaagacactgcctcctcccttcagcatcgttcccactcccaagtccttc
taccaccacatcaggtggatagtcggcatgctgcattgccgacaaaggagtgtgaagaag
gatctagagctggggttggacagttcaaagtccaggctcaatctcttcacccagtccaac
ctacgcattgcagagtcccacagcattctgaaccaacccacctgctatcagcaaatcatg
aagcgactcatcaaacgctatgttttgaaagcacaagtggacaaagaaaacgacgaggtc
aatgaaggtgaactgaaagaaatcaagcaggacatctccagtttacgttacgaactcctg
gaagacaagtctcaggctacagaggagctgtccttgcttatccagaaactgagtgacaaa
ctgaacctaggccctactacacgcttgccctacaagtga
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