Oncorhynchus nerka (sockeye salmon): 115130325
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Entry
115130325 CDS
T07952
Name
(RefSeq) dermatan-sulfate epimerase-like protein
KO
K01794
chondroitin-glucuronate 5-epimerase [EC:
5.1.3.19
]
Organism
one
Oncorhynchus nerka (sockeye salmon)
Pathway
one00532
Glycosaminoglycan biosynthesis - chondroitin sulfate / dermatan sulfate
one01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
one00001
]
09100 Metabolism
09107 Glycan biosynthesis and metabolism
00532 Glycosaminoglycan biosynthesis - chondroitin sulfate / dermatan sulfate
115130325
Enzymes [BR:
one01000
]
5. Isomerases
5.1 Racemases and epimerases
5.1.3 Acting on carbohydrates and derivatives
5.1.3.19 chondroitin-glucuronate 5-epimerase
115130325
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DSE-like_N
Sulfotransfer_3
Sulfotransfer_1
Motif
Other DBs
NCBI-GeneID:
115130325
NCBI-ProteinID:
XP_029517210
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All DBs
Position
LG6:complement(13879904..13885212)
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AA seq
1219 aa
AA seq
DB search
MSWTMAKKWIGCYIFLLALLAVGMAFSGVFNASEKYIFTDDLVPLKLTQGKASEQRKLQS
TDSHPNLYFNQVDVQLMRQRSSSTHSHIFKVIRAAVLTMLSNVPLYMPPAKHEEFTSKWN
EIYGNNLPPLALYCLLCPEDSGALQFLMKFMDRMANYPDWKVTSAPNDEVPLAHSLTGFA
TAYDFIYSFLDEHRRDVYLKRIRSETEELYETSKYRGWGKQYLQNHQTTNILAILTGAIV
VGAHEDPETMVWKQVSVNYMEKTMFLLNHVVDGSLDEGVAYGSYTAKSITQYVFLAQRHF
NIDNTQNNWLREHFWFYYATLLPGFQRTVGIADSNYNWFYGPESQLVFLDTFVIRNGTGN
WLAQQIRKHRPKDGPMGQSSAQRWTTLHTEYIWYNAHLTAQPPHGFGKARMHIFSNWGVV
TYGAGLPNGQGNTFVSFKSGKLGGRAVYDIVHAKPYSWLDGWNSFNPGHEHPDQNSFTFA
PNGQVFVSEALYGPKYSYLNNVLVFGPSPSSQCNAPWEGQLGECAKWLRWTDEGVGDAAG
ELIAASSHRDTMFVSGEAAPAYSPAMRLRSVYRALVLLNSQTLLVLDHVEKLDDSPITSQ
SAFFHNLDIDFKYVPYKFMDKYNGALMDVWDAHYKMFWFDSQGLSPDTRIQEAEQAAEFK
KRWTQYVNVTFPMRGTVSRVAYVMHGPYVKVSNCRFLDSSKNGVRLSLVINNTEKIVSVV
TNYKDIGTRLSYLGFGGYAKMEDRHQIIRYGLGTQLVPKQNTVDNQLFDFGFTVNVIAGV
ILCVAIVFLTLQRKFYVCFSRLMRYALFSVLILWIAALLFVSNTCDQLLCGVKWKGVSTD
PEVSKQTRLYDQHRFALPTVVITTLPGSGSEILKNLFDNSSDFVYIRVPTEHVDIPETEF
EFDSLVDACEWSRTDALRGRFKIIQGWLHSLVHNTKLHLQNIQLVESSRAKLPQRAPGPG
SDRRKRTRRKEPAAELRGKMRGGLDRDAEYVREMRRHVSEYPNARVVLNMRSGSWGLKLP
FLQEVVGPSLRTINVVRDPRAWIYLMLYNSKPSFYSLKNIPQHLSLIFKVDGNSSSTTDR
CPVSAPEFRMIRRLLSHSEASAVLLLAHLWLAHTAAVLRVSGSLQAEAYLQVRFEDIVTF
PQETAERIHRFLGVPVTPAALNQLMFTTSTNLYNLMYEGDISPANINIWRQNMPRKDIRL
IEDTCGVVMKRLGYSRFIS
NT seq
3660 nt
NT seq
+upstream
nt +downstream
nt
atgtcttggaccatggcaaaaaagtggatagggtgctatatatttttactggcactcttg
gcagtgggaatggccttttcgggtgtattcaatgcgtccgaaaaatacattttcacggat
gatttggtgccgctcaaactcacccagggtaaagcatcagagcagcgaaaacttcaatct
accgattctcatcccaacctgtatttcaaccaagttgatgtacagcttatgaggcaaaga
tcatccagcacacacagccacattttcaaagtaatcagagcagcggtcctgaccatgctg
tccaatgtgcccctttacatgccccctgcaaaacatgaggagtttactagcaagtggaat
gagatttacgggaacaacctacccccccttgctctgtattgcctgctgtgcccagaggat
tcaggtgccctgcagtttctcatgaagtttatggatagaatggcaaattacccggactgg
aaggtgaccagtgctcccaatgatgaggtgcccttggcacactcacttactgggtttgcc
accgcatatgactttatttactcgttcctggacgagcaccgacgggatgtttacctcaag
agaattcgctctgagacagaggagctgtatgaaacatctaagtataggggttgggggaag
cagtatctccaaaatcatcaaaccactaatatattagccatcttgactggggctattgtg
gtcggcgcccatgaggacccagaaacgatggtttggaaacaggtgtcagtcaattatatg
gagaagaccatgtttctcctaaaccacgttgtagacgggtcactagatgagggcgtggca
tacgggagctatacagccaagtcgatcactcagtatgttttcttagcgcaacgtcatttc
aacattgacaacacacagaacaactggctgcgggaacacttctggttctactatgccact
cttctgcccggctttcagaggactgtgggcatagccgactccaactacaactggttctac
ggcccagagagccagctggtgttcctagacacatttgttataagaaacggcactgggaac
tggctagcccagcagattagaaagcacaggcccaaagatggtcccatgggtcagtcctct
gcccagcgctggactaccctacacactgagtacatctggtacaatgcccatctcactgca
caacctccccatggctttggcaaagccaggatgcatattttctccaactggggtgtggtg
acgtacggagctgggctgcccaacggtcagggaaacacatttgtctcctttaaatccggg
aagctgggtggccgtgccgtgtatgacatcgttcatgcaaagccctattcatggctggac
ggctggaatagcttcaacccaggccacgagcacccggaccaaaactccttcacttttgcc
cctaacggacaggtatttgtgtctgaagcactttacgggcctaagtacagttatctgaac
aatgtgctggtgttcggaccctctcccagtagccagtgtaacgctccatgggagggccag
ctgggggagtgtgctaaatggctgcgctggacagatgaaggggtaggggatgctgctggg
gagctgatcgctgcctcctcccatagagacactatgtttgtaagtggggaggcagcccca
gcttactctcctgccatgcggctgaggagtgtctacagggcccttgtgctgctcaactcc
cagaccttgctagtactggaccatgttgagaagctggacgattcgcccatcacctcgcag
agtgcgttcttccacaacctcgacattgacttcaaatatgtcccctataaattcatggac
aagtacaatggggcgttgatggatgtgtgggatgctcattataaaatgttctggtttgac
agccagggtctcagcccagatactaggatacaggaggccgagcaggctgcggagttcaaa
aagaggtggacacagtatgttaacgtcactttccccatgaggggcacagtaagccgagtg
gcctatgtgatgcatggaccttatgtcaaagtgtccaactgtcgatttctggacagtagc
aaaaatggtgtcagactatctctagttataaacaacacagagaaaatagtttcagttgtt
acaaactataaagacataggaacaagattaagttatttaggatttgggggttatgccaaa
atggaagacagacatcagatcattcgatatggcctggggactcaactggttccgaaacaa
aacacagtggacaatcagctgtttgattttggattcacagtcaatgtgatagcgggggtg
atactttgtgttgctattgtttttttgaccctgcagagaaagttctatgtgtgcttcagt
agactgatgcgctatgctctgttctcagtgctcatactgtggatagctgcgctgttgttc
gtgtcaaacacctgcgatcaactcctatgtggggtcaaatggaaaggtgtcagcactgac
ccagaggtcagcaaacaaaccagactttatgatcaacatcgctttgccctgccaaccgtt
gtcataacgaccctgcctggctcaggatctgaaatacttaagaacctttttgacaacagc
tccgactttgtttacattcgtgtccccacggagcatgtagacattccagagaccgagttc
gaatttgactcgctggttgatgcctgtgagtggtccagaacggacgccctgcgcggacgc
tttaaaatcatccagggctggctgcattctctggtccacaacaccaagctgcatttgcag
aacatccagctagtggagagtagcagggccaagctgccccagagagccccaggccccggc
agtgacaggaggaagaggactaggaggaaggagcctgccgccgagctgaggggcaagatg
aggggcggccttgatcgggatgctgagtacgtcagggagatgaggcgccacgtcagtgag
taccccaatgcccgcgtggtcctcaacatgaggagtggaagctgggggctcaaactcccc
ttccttcaggaggtggtgggcccgtccctgaggaccatcaatgtagtcagagacccccgg
gcgtggatctatctcatgctctataacagtaaacccagcttttactcccttaaaaacatt
cctcaacacctgtccctgatattcaaggtggacggtaacagtagcagtaccacggacagg
tgcccagtctcagcccctgagttcagaatgatccggaggctcttgtcccactcggaggcc
agcgccgtcctcctgctggctcacctgtggctggcacacactgctgcagtgctccgggtc
agtgggagcctccaggcagaggcctacctccaggtgaggtttgaggacatagtcactttc
ccccaggagacagctgaaaggatccacaggttcctgggggtgccggtcacaccggcggcc
ctcaaccagctcatgttcaccacctccacaaacttgtacaacctgatgtacgagggggac
atatcaccagccaacattaacatatggaggcagaacatgcctcgcaaggacatcagactg
atagaggacacatgtggggtggtcatgaaaagacttgggtactccaggtttatcagctag
DBGET
integrated database retrieval system
