Oncorhynchus nerka (sockeye salmon): 115130536
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Entry
115130536 CDS
T07952
Name
(RefSeq) platelet-derived growth factor receptor beta-like isoform X1
KO
K05089
platelet-derived growth factor receptor beta [EC:
2.7.10.1
]
Organism
one
Oncorhynchus nerka (sockeye salmon)
Pathway
one04010
MAPK signaling pathway
one04020
Calcium signaling pathway
one04510
Focal adhesion
one04540
Gap junction
one04810
Regulation of actin cytoskeleton
Brite
KEGG Orthology (KO) [BR:
one00001
]
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
115130536
04020 Calcium signaling pathway
115130536
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
115130536
04540 Gap junction
115130536
09142 Cell motility
04810 Regulation of actin cytoskeleton
115130536
09180 Brite Hierarchies
09181 Protein families: metabolism
01001 Protein kinases [BR:
one01001
]
115130536
09183 Protein families: signaling and cellular processes
04090 CD molecules [BR:
one04090
]
115130536
Enzymes [BR:
one01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.10 Protein-tyrosine kinases
2.7.10.1 receptor protein-tyrosine kinase
115130536
Protein kinases [BR:
one01001
]
Receptor tyrosine kinases (RTK)
PDGFR family [OT]
115130536
CD molecules [BR:
one04090
]
Proteins
115130536
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PK_Tyr_Ser-Thr
Pkinase
Ig_3
I-set
Ig_2
ig
V-set
C2-set_2
RIFIN
VEGFR-1-like_Ig-like
Ig_VEGFR-1-like_5th
Haspin_kinase
Motif
Other DBs
NCBI-GeneID:
115130536
NCBI-ProteinID:
XP_029517642
LinkDB
All DBs
Position
LG6:complement(32982872..33043518)
Genome browser
AA seq
1092 aa
AA seq
DB search
MRSVRVCTLHLTTILTALLHFCPEFCCLEISPSNSEVVMTAGDSMIITCSGWGMVEWRFK
RDDNVPYFGVENQNTTSVLILDNVTWSQTGVYVCTEAWTDETIEVAVFVPDPDVWFIESF
HGMVTKTSEEGIIPCVVTNPQINVTLYERDSDMHLKGVYIPSEGYRAPLEDRTYVCRGEL
NGEEKESQAFYVFSIVVPETIDAYINASKTVLKQGEPLTVNCTVHGVELVFFSWDYPNRD
VDSIEPLTDVLSSQKMRSRLIVSKVTLANTGQYACHVHEGVQDQRATANVNITILEQGFV
ELRSVQDRNVSAQLHQNVELRVEIEAYPPPRVRWTKDDATVNGDNVVITKQEHETRYVST
LTLVRIRTEQKGLYTVHVANGDDTKKLTFDLEVKVPPQITDLSDHHLPGKRHAVTCVAEG
VPSPTIQWFSCDSMLKCSNRSTVWQPLVSDPETLSVQTNVSFNESRMVGQVRSQVIFHKP
QQVSVRCEASNERGLRRRDVKLVSSTFFSQVAVLAAVLALVVIVIISIIILIAVWRKKPR
YEIRWKVIESVSLDGHEYIYVDPIHLPYDLAWEMPRDSLVLGRTLGSGAFGRVVEATAYG
LSHSQSSTKVAVKMLKSTARRSETQALMSELKIMSHLGPHLNIVNLLGACTKQGPLYLVT
EYCRYGDLVDYLHKNKHMFLQYYLEKNQEDSGCRISGGSTPLSQRKGYVSFGSECDGGYM
DMSKDEPTVYVPMQELKDTIKYADIQPSPYESPYQHDHYQEQDQITMDPALFISDSTTLS
YTDLIGFSYQVAKGMEFLASKNCVHRDLAARNVLICEGKLVKICDFGLARDIMHDSNYIS
KGSTFLPLKWMAPESIFHNLYTTLSDVWSYGILLWEIFTLGGTPYPDLPMNELFYSALKR
GYRMAKPNHATDEVYEVMQKCWDEKHEKRPEFSFLVHTMGNMLTDSYKKRYCQVNDEFFK
SDHPAVVRTKPRLSSPFLTPSTAPDSLQDLNRYPLTGDFRPEADGEEVTTSYNDYIIPIP
DPKPQEEVFSEANRMPMESPASSLVLEDEEADSISQETAEADTIPEEEDLHANQALIPLE
SSGTPEVEDSFL
NT seq
3279 nt
NT seq
+upstream
nt +downstream
nt
atgaggagtgtcagagtatgcactctccatctgacaaccattcttacagctcttttacac
ttctgtcctgagttctgttgcctggagatctcccctagcaacagtgaagtcgtcatgaca
gcgggtgactccatgatcattacctgttctggctgggggatggtcgaatggaggttcaag
cgggatgacaacgttccctattttggagtggagaaccagaacacaaccagtgttctcatt
ctggacaatgtgacgtggagccaaacgggagtatatgtctgtaccgaggcttggactgac
gagactatagaggtggcagtctttgttccggatcctgatgtgtggttcattgagagtttc
cacggcatggtgaccaagaccagcgaggaggggatcatcccgtgtgtggtcaccaacccc
cagatcaacgtcaccctctacgaaagagacagtgacatgcacctgaagggggtctacatc
ccaagtgagggctacagggcgccactggaggacaggacctatgtgtgccgaggagagctg
aacggggaggagaaagagtcccaggctttctacgtattcagcattgttgttccggagacg
atcgacgcctacatcaatgcgtctaagacggtgctgaagcagggcgagcctctgaccgtg
aactgcacggtgcacggagtggagctggtcttcttctcctgggactatcccaatagagac
gtggactccattgagcctctgactgacgtcctgtcatcccagaagatgcgctcacgcctc
atagtctccaaggtgacgctggccaacacgggccagtacgcgtgtcatgtccacgagggt
gtccaggaccagagagccacagccaacgtcaacatcaccatccttgagcaaggcttcgtg
gagctgaggtccgtccaggatcgtaatgtctcggcccagctgcaccagaacgtagagctg
agggtggagattgaagcttacccccctccacgtgtccgctggaccaaagatgatgccacg
gtcaacggggacaacgtcgtaatcaccaagcaggagcatgagaccaggtacgtcagcacg
ttgaccctggtgaggatcaggacagaacagaaaggcctctacaccgttcacgtcgccaac
ggcgatgacaccaagaaattgacctttgatctagaggtcaaagtcccccctcagatcaca
gacctgtcggaccaccacctccctgggaagaggcatgcagtgacctgtgtggctgagggg
gtaccttcccccaccatccagtggttcagctgtgacagcatgctcaagtgcagtaaccgg
agcacagtgtggcagcccctagtgtcagaccctgagaccctgagcgtccagaccaacgtc
agcttcaacgagagccgtatggtgggccaggtccgcagccaggtcatcttccacaagccc
cagcaggtgagcgtccgctgcgaggccagcaacgagagaggactccgcaggagggacgtc
aaactggtgtccagcacttttttctcccaggtggcagtgttggctgcggttctagccctg
gtagtcatcgtcatcatctccatcatcatcctcatcgctgtgtggaggaagaagcctcgc
tatgagatcaggtggaaggtgatcgagtcagtgagtctggacggacatgagtacatctat
gttgaccccatacatctgccctatgaccttgcctgggagatgccccgagacagcctggtg
ctgggtcgtactcttgggtccggagcattcggcagggtggtcgaagcgaccgcgtatggt
ctcagtcattcccagtccagcacgaaagtggcagtgaaaatgctcaaatccacggccagg
aggagtgagacccaggctctaatgtcagagctgaaaatcatgagccacctggggcctcac
ctcaacattgtcaacctgctgggagcctgcaccaaacagggccctctctacctggtgaca
gagtactgtcgctatggagacctggtggactacttacacaagaacaagcacatgttcctg
cagtactaccttgagaagaaccaggaggactctggctgccgcatctctggagggagcacc
cctctcagccaaaggaaaggctacgtgtcatttggcagtgagtgtgacggtggttacatg
gacatgagtaaggacgagcccacagtgtacgtccccatgcaggagctgaaagacaccatc
aaatacgctgacatccagccttctccctatgagtctccctatcagcacgaccattaccag
gaacaagaccagatcacaatggaccctgccctgttcatcagtgactctactacacttagc
tatactgacctcatcggcttcagctaccaggtggccaaaggcatggagttcctcgcctcc
aagaactgtgtccatcgtgacctggccgccaggaacgtgttgatctgtgaggggaaactg
gtgaagatctgtgactttggcttagccagagacatcatgcacgattccaactacatctcc
aaaggcagcacattcctgcccctgaagtggatggccccagagagtatcttccataacctg
tacaccaccctgagtgacgtgtggtcctatggcatcttgctctgggagatcttcaccctt
ggaggaaccccttaccccgaccttcctatgaatgagctgttttacagtgccttaaagaga
ggctatcgcatggccaaacctaaccacgccacagacgaagtttatgaagtgatgcagaag
tgctgggatgagaaacatgagaagaggccagagttctcctttctggtgcacaccatgggg
aacatgctcactgacagctataaaaagagatactgccaagtcaacgacgagttcttcaag
agtgaccacccggccgtggtcagaaccaaacccaggctctcctcccccttcctcaccccc
tccaccgcccctgactccctccaggatctcaaccgctaccccctaactggagactttaga
ccggaggcagatggagaggaagtgactacctcctacaatgactacatcattcccatcccg
gaccccaagcctcaggaggaagtcttctccgaggccaaccgcatgccaatggaaagcccc
gcgagctctctggttctggaggatgaagaggctgattccatctcccaggagacagccgag
gcagacaccattccagaagaggaggatctccatgccaaccaggctctgattccactggaa
tcttctggaacaccggaagtggaagacagcttcctgtag
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