Oncorhynchus nerka (sockeye salmon): 115132061
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Entry
115132061 CDS
T07952
Symbol
agrn
Name
(RefSeq) agrin isoform X1
KO
K06254
agrin
Organism
one
Oncorhynchus nerka (sockeye salmon)
Pathway
one04512
ECM-receptor interaction
one04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
one00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
115132061 (agrn)
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
115132061 (agrn)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
one00535
]
115132061 (agrn)
Proteoglycans [BR:
one00535
]
Extracellular matrix (ECM) proteoglycans
Basement membrane proteoglycans
115132061 (agrn)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Laminin_G_1
Kazal_2
Laminin_G_2
Kazal_1
NtA
EGF_laminin
SEA
EGF
Kazal_CFAI
Laminin_G_3
hEGF
Motif
Other DBs
NCBI-GeneID:
115132061
NCBI-ProteinID:
XP_029520140
LinkDB
All DBs
Position
LG7:36001062..36284019
Genome browser
AA seq
2067 aa
AA seq
DB search
MVSQRRPTHLYGWALMIVAVFCQRCHGSCPEKDLEKREEEANVVLTGTVEEIMNMDPVHN
TYSCKVRVWRYLKGKTMVNGEVLLDGGNKVMIGGFGDPVICDNQVATGDTRIFFVNLAPE
YMWPAHKNELMLNSSLMRITLRNLEEVEHCVDDKPVHFTPAQPPDGCRGMLCGFGAVCER
EAADPSKAECVCKKMVCPSVVAPVCGSDSSTYSNECELEKAQCNTQRRIKVLRKGPCALK
DPCSEVICSYGSTCIQSSDGLSAKCMCPLSCEGKPEQVMCGSDGQDYRNECELHKQACHT
KKNIRLQRQGSCNPCKGLENNLNVACRVEPRTHQPLNIPRPESCPAVNEPLCASDGQTYE
SECHMKRTGMQKGIELKKIHPGRCKKQEECREECKFNGVCQVERLGMRCSCEPIQCDGTY
KPLCGKDGHTYINDCERRRAECQAKAHIPVKQQGPCDLHTPSPCLGKACEFGAACVVKNN
EPVCECHGACPQMPDLVCGSDGHSYGSQCEMKAMGCALQKEIHIQHRGPCDEACANCSFG
AICDGQSGRCVCPQECVESHQPVCGSDGSTYDSECELHVRACTEQLDLRVLAQGECKTCG
SAVCAWGARCVQNKCECPQCQGQAFSPVCGSDGFTYDNTCELGVASCVLKKKIEAAKPGS
CDEECGSGGSGSGIESCEQDRCRTFGGSWDEDAEDDRCVCDFDCHRVPRNPVCGSNGKTY
SNECEMKKARCEKQEHLLIQNQGPCTAISATSPTKLPAQEHCSLSVYGCCRDNKTAALGV
GLAGCPSTCQCNPYGSYKGTCDPGSGQCSCKPGVGGQKCDRCDPSFWNFRGIVTENLSGC
TPCNCDAVGSVRDDCEQMSGLCSCKTGVKGMKCNVCPDGSKMGMSGCDTGADAPTSCDEL
DCKFGALCDEVNGQAHCECPSPDCDEKNKTKVCGSDGVTYADQCQLRTIACRQDKHITVE
RFGQCTESIIEPAGRSTLYPPTSHAAATTPSTAHVRLTSPHYGASLSPLDDDQMKGLPAS
FVEALPPPMATESALTTNRPVTTPRHPPHSTTPHLPGHTSPGSSPTAFEDSGSGEPSGDD
QVAEEEENEEEGSAFGVLEASGEEPVDPTAAATTIPTAEDRSSCDNTPFGCCPDGKTASS
SPEGANCPPTMRFSGFLHLDQVEGQEVFYTPEMEDPKSELFGETARSIESALNELFRKSE
VQKDFMSVRVRSLAPSNSILAFVEAHFDSETRYTVEDIEGALLKQLKAAKETAIMVKKPE
EENIRFTNYGLSSLPYFTTTTTTTATATTPTASPSPFITSRPPGTTRRPYTSRRTTTAPS
PVTTPAPTTTITPLHRTRPVPHHTKAQRPCDSHPCRHGGTCEDDGADFTCICPAGRGGAV
CEKLIKYFIPSFGGKSYLAFDTMKAYHTVRIAMEFRAAEMTGILLFNGQDGKKDFLSLTL
VNGKVELKFNTGSGTGTLVSKVQVKQGRWHQLVVTRNRRNAMLSVDNETHIDGASPPGTD
GLNLDTHLFIGGVPEDMMTDVKERTSIGTGLVGCVRMLDVNNLVYNLQEKSGNMLYGTGM
GECGNNPCQPNPCKNGAPCQVKEAEMFHCKCINGYSGPTCADTHNPCEPNRCHPLSQCQV
QPEGGYKCECPMGREGRHCEKVSEKKGAYMPFFSGDSYLELKGLHTYGHDLHQKVSMTVV
LMANDSNGMIFYSGQKTDGKGDFISLSLNDGILEFRYDLGKGPAVIRSKDKIKMGVWNTV
NLERANRKGEININGKDPVRGESPKSRKNQHTALNLKESLFVGGAPDFSRLARAASLKDG
FKGTIQKITLMGTPILRQENALHSSDVAMFEGHPCSREPCHNGGRCNPLLESYECVCLLG
FTGTHCQNTIFEKSAGETESIAFDGRTFIEYHNAVTKSEKALLVNKFELSIKTEATQGLV
LWSGKGVERSDYIALAVVDGRVQMTYDLGSKPVVLRSTVRVNTNRWIHIKASRALRDGSL
QVGNEAAVTGSSPLAATQLDTDGALWLGGLEELAVARRLPKAYSTGFVGCVKDVAVDGVE
LHLVEDALNSPKILHCSTSGTAATAKK
NT seq
6204 nt
NT seq
+upstream
nt +downstream
nt
atggtttcacaacgaagaccaactcacttgtacgggtgggcattgatgatagtcgccgtt
ttctgtcaacggtgtcacggaagttgtccggagaaagacttggagaaaagggaagaggag
gcgaacgtagttttgactggtaccgttgaagaaatcatgaacatggacccagtgcataat
acatactcgtgcaaggtgagggtatggcggtacctgaaaggcaagaccatggtcaacggc
gaggttcttctggacggcggcaacaaggtgatgatcggcggcttcggggaccctgtgata
tgcgacaaccaggttgccactggcgacacgcgcattttctttgtcaacctggccccggag
tacatgtggccggcacataagaacgagctgatgctcaactccagcctgatgaggattacc
ctgcgtaacctggaggaggtggagcactgtgtggacgacaaacctgttcacttcacgccg
gcccagcctcctgatggttgcagaggtatgctgtgcggcttcggggcggtgtgtgagcgt
gaagcggctgacccctctaaggcggagtgtgtatgcaagaagatggtttgtccgtcggtt
gtggcgcccgtgtgcggctcagactcctccacctactccaacgagtgcgagctggagaag
gcccagtgcaacacgcagcgacgcatcaaggtgctgcgcaagggaccctgtgccctgaag
gatccatgcagcgaggtgatctgcagttacggcagcacctgcatccagtcatcggacggc
ctgtcggccaagtgcatgtgcccgctgagctgcgaaggcaagcccgagcaggtgatgtgt
ggcagcgatggccaggactaccgcaatgagtgtgagctccacaagcaggcctgccatacc
aagaagaacatccgccttcagcgccagggatcctgcaacccatgtaaaggcctcgagaac
aacctgaacgttgcatgccgggtggaaccgcgcacccaccagcccctgaatatcccccgc
ccggagtcctgcccagccgtcaatgagccactgtgtgccagcgatgggcagacgtacgag
agtgagtgccatatgaagcggacgggcatgcagaagggcattgaactcaagaagatccac
ccgggccgctgcaagaaacaagaggagtgcagggaggagtgcaagttcaacggagtgtgc
caggtggagcgtctgggcatgcgctgctcctgcgagcccatccagtgcgatggcacctac
aagccgctgtgcggcaaggacggccacacctacatcaatgactgcgagcgccggcgggct
gagtgccaggccaaggcccatattcccgtcaagcagcaaggcccgtgtgatctacacact
cccagcccgtgcctggggaaggcctgcgagttcggggccgcgtgcgtggtgaagaacaac
gagcccgtgtgcgagtgccatggcgcctgcccccagatgcccgacctggtgtgcggcagt
gacggccacagctacggcagccagtgtgagatgaaggccatgggctgcgccctgcagaag
gagattcacatccagcaccgaggaccctgcgacgaggcgtgtgccaactgttcgtttggg
gcgatctgcgatgggcagtctggccgctgtgtgtgcccgcaggagtgtgtggagtcccac
caaccggtgtgcggcagcgacggctccacctacgacagcgagtgtgagctccacgtgcgt
gcctgtaccgagcagcttgacctgcgcgtgctcgcccagggagaatgcaagacgtgcggt
agcgccgtgtgtgcctggggggcccgctgcgtccagaacaagtgcgagtgcccgcaatgc
cagggccaggccttctcgccagtgtgcggcagcgacggcttcacctacgacaacacctgc
gagctgggcgtggcctcctgcgtcctcaaaaagaagattgaggcggccaagcctggcagc
tgcgacgaagagtgtggttcaggaggatcggggtcaggtattgagagctgcgaacaggac
aggtgtcgtacatttggaggatcgtgggacgaggacgcagaggacgaccgctgtgtctgt
gacttcgactgccatcgcgtgcctcgcaacccggtgtgtggctcaaatgggaagacctac
agcaacgagtgtgaaatgaagaaggctaggtgtgaaaagcaagagcacctgctgatccag
aatcagggaccctgtacagcgatttcggccacctctccgacaaagctgccagcgcaggaa
cactgcagtctgtcagtctatggctgttgccgtgacaacaagacggcggcccttggtgtg
ggacttgccggatgccccagtacatgccagtgtaacccgtacggctcctacaaggggact
tgtgacccgggcagcggccaatgctcctgtaagcccggcgtcgggggacagaagtgcgac
cgctgcgatccaagcttctggaacttccgcggcatcgtcacagagaacttgagcggctgc
acaccgtgtaactgcgacgcggtgggctcggtgagagacgactgcgagcaaatgtcaggc
ctgtgctcctgcaagacgggagtgaagggcatgaagtgcaacgtgtgccccgacggcagc
aagatgggtatgagcggctgcgacacaggtgccgatgccccaacttcatgtgatgagctg
gactgcaagtttggcgcgttgtgtgacgaggtcaatggtcaagcccactgcgaatgtccc
tctcccgactgtgacgagaagaacaagaccaaggtgtgtggctctgatggggtgacctac
gctgaccagtgccagctgaggaccattgcctgtaggcaggacaagcacatcacagtggaa
cgctttggccagtgtacagaaagcatcatagagccggccggccgatccactctttacccc
cccacctcccacgccgccgccaccaccccctccaccgcccacgtcaggctcacgtcgccg
cactacggtgcatcactctctcccttggacgatgatcaaatgaaggggctcccggcctct
ttcgtggaagccttgccaccccccatggccacggagagcgcgctcaccaccaaccgcccc
gtcaccaccccccgccacccacctcactccaccaccccccacctgcctggccacaccagc
cctggctcctcccctaccgcctttgaagactcagggagcggcgagcccagcggagacgac
caggtggcggaagaggaggagaatgaggaagaaggtagcgccttcggagttctggaggcg
agcggagaggagcctgttgaccccacagctgcggccaccaccatccccacggcggaagat
cgctcgtcgtgtgacaacactcccttcggctgttgtcccgacggcaagacggcctccagc
agccctgagggagccaattgcccccccaccatgaggttcagcggcttcctgcacctagac
caggtggagggccaggaggtcttctacaccccagagatggaggatcccaagtctgagctg
tttggggagacggccaggagcatcgagagtgctctgaacgagttgttccggaagtcagag
gtgcagaaagacttcatgagtgtccgcgtccgcagcctggctcccagcaactccatcttg
gccttcgtcgaggcccactttgactcagagaccaggtacacagtggaggacatcgaggga
gccctgctcaagcagctgaaggcagccaaggagacggccatcatggtgaagaagccagag
gaggagaacattcgcttcaccaactacggcctctcctccctcccctacttcaccacaacc
accactacaacggccacagccaccacccccaccgccagcccctcccccttcatcacaagc
cgtcccccgggcaccacccgccgcccttacaccagccgccggaccaccaccgccccctcg
ccagtgaccacaccggcccccactactaccatcacccccctccacaggaccaggcctgtg
ccccaccacaccaaggcccagcggccctgcgactcccacccctgccgccacgggggcacc
tgcgaggacgacggtgccgacttcacctgcatctgccccgccgggagagggggtgccgtc
tgcgagaaactgatcaagtacttcattccgtcgttcgggggtaagtcctacctggccttt
gacaccatgaaggcttaccacactgtccgcatcgccatggaattcagggccgccgagatg
acgggcatcctcctcttcaacggccaggacggcaagaaggacttcctgtctctcaccctg
gtcaacggcaaggtggagctcaagttcaacacaggttcgggcacaggcaccttggtcagc
aaggtccaggttaagcagggtcgctggcaccagctggtagtgacaaggaaccggcgcaac
gccatgctgagcgtggacaatgagacccacattgacggcgccagcccccccggcaccgac
ggcctcaacctggacactcacctgttcatcggaggggtgcctgaagacatgatgacagat
gtgaaggagagaacctccatcggtaccggtctggtgggctgtgtgcgcatgctggacgtc
aacaacctggtgtacaacctgcaggagaagagtggcaacatgctgtacggcaccggcatg
ggcgagtgcggcaacaatccgtgccagcctaacccttgcaagaatggcgccccatgccag
gtcaaggaggccgagatgttccactgcaagtgcatcaacggctactccggtccgacgtgc
gccgacacccacaacccgtgcgagcccaacagatgccaccccttgtcccagtgccaggtg
cagccggagggagggtacaagtgcgagtgtcccatgggtcgcgagggacgccactgcgag
aaagtgtcggagaagaaaggggcctacatgccgttctttagcggagactcttacctggag
ctgaagggattgcacacctacggtcacgatctccaccaaaaggtcagcatgacagtggtg
ctcatggccaatgactccaacggcatgatcttctacagcggccagaagacggacggcaaa
ggtgacttcatctccctctccctcaacgacggcatcctggagttccgctatgacctgggc
aagggccccgctgtcatcaggagtaaagataagatcaagatgggcgtgtggaacacagtg
aacctggagcgggccaatcgaaagggagagattaacatcaacggaaaggacccagtcaga
ggagagtcgccgaaatcacggaagaaccaacacaccgctctcaacctgaaggagtctctg
tttgtgggtggtgctcctgatttcagccggctagcaagggccgcctcgctcaaagatggc
ttcaaggggaccattcagaagatcaccctgatgggcacgcccatcctccggcaggagaac
gcgctgcactccagtgacgtggccatgttcgagggccacccctgcagccgtgagccctgc
cacaacgggggtcgctgcaaccccctgctggagagctatgagtgtgtgtgcctcctcggc
ttcacaggcacacactgtcagaacaccatcttcgagaagtccgccggggaaacggagtcc
atcgcctttgacggccggacattcattgagtaccacaacgccgtcaccaagagtgagaaa
gccctgctggtgaacaagtttgaactgagcattaagaccgaggccactcagggcctggtg
ctgtggagtggtaagggcgtggagcgatctgactacatcgccctggcggtggtggacggc
cgtgtgcagatgacctacgacctgggctccaagcctgtggtgctgcgctcgacggtccgc
gtcaacaccaaccgctggatccacatcaaggccagcagagcacttagggacggctctctc
caggtgggcaacgaggcagcggtcacagggtcatcgcccctggcagccactcagctggac
acagacggagccctctggttgggtggcttagaggagttggctgtggcccggagactgcct
aaggcctacagcacaggatttgtgggctgtgtaaaggatgtcgcggtggacggcgtggag
ctccacctggtggaggacgccctgaacagccccaaaatattacactgttccacctctggc
acagccgccacggccaaaaaatag
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