Oncorhynchus nerka (sockeye salmon): 115133510
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Entry
115133510 CDS
T07952
Name
(RefSeq) nectin-4-like isoform X1
KO
K06593
poliovirus receptor-related 4
Organism
one
Oncorhynchus nerka (sockeye salmon)
Pathway
one03265
Virion - Ebolavirus, Lyssavirus and Morbillivirus
one04520
Adherens junction
Brite
KEGG Orthology (KO) [BR:
one00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03265 Virion - Ebolavirus, Lyssavirus and Morbillivirus
115133510
09140 Cellular Processes
09144 Cellular community - eukaryotes
04520 Adherens junction
115133510
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
one04515
]
115133510
Cell adhesion molecules [BR:
one04515
]
Immunoglobulin superfamily
Nectin family
115133510
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ig_3
V-set
I-set
Ig_2
ig
C2-set_2
TMEM154
LapA_dom
LST1
Protocadherin
EphA2_TM
FAM176
DUF6377
Motif
Other DBs
NCBI-GeneID:
115133510
NCBI-ProteinID:
XP_029522639
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Position
LG8:24265790..24291148
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AA seq
610 aa
AA seq
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MTSLLGGLTPLLWILGSFIAVVQGDFEQQSPVQSLTEVETRLPCRFKVEVGQVVVQVTWT
KERADGTKDQIITVHHTAGQTEFGQYSGRVRFGSSEPTVDSSLIIMNTVESDEGTYNCHI
SAFPSGNFEQQLSLTVWTTPISSLDPVILVEGQSFRLAASCRSVARPPPILNWDTDLTGL
SHNRSSVGGSVSTHFSLHPLRSMNGMRLDCLVRHRALKEPRRITNNLVVHYPPNAEISGF
NHNWYAGLEGAALSCVSGGNPKPQSFTWTRKGGDLPEGVTAGNGSLLFNRPLGLTDAGIY
QCVAYNVVGTGKAEVEITVTEFPQKPVFFNSLLMIIVGGVAGGLLLIMVIIVISVTRHHK
RKNKKLERELNVKNEEISTLSRQASFRRVNSVSTDARGQMEENIPLRVEGTLRTSLSSLG
DPGRIRDSRSTLVGGGGLDNLGRPVLNNSSRRGRENRAMDREEENRLRVESYVRNSTMSL
GTRLHLPIQPSPFPMEQSTRLLRSLNGSVIIPTEGGLHARNSPLSCSYPPVTDDEQEEGE
SVEGERGTSSRMSRLDQGRSEDQDNSSQISDAERGHNHHFQQNNGTLRPKPRPNGIPSPH
ASLIHKAQIV
NT seq
1833 nt
NT seq
+upstream
nt +downstream
nt
atgacatcactcctgggcggactgacaccgctgctgtggatccttgggagtttcattgct
gtggtgcagggggactttgagcaacaatctcccgtgcagtccttgaccgaggttgagacc
cggctgccctgccggttcaaggtggaagtgggccaggtggtggttcaggtcacctggacc
aaggagagagcagatggtaccaaggaccagatcatcacagtacaccacactgccggacaa
acagagtttggtcagtactcggggcgtgtgcggttcggcagcagtgagcccacagtggac
tcgtctctgatcatcatgaacactgtggagtcagatgagggcacgtacaactgtcacatc
agcgccttcccctcggggaactttgaacaacagctgtcactcaccgtgtggaccacgccc
atctcctccctggaccctgtaattcttgtcgagggccagtcctttcgattggctgcctcc
tgccgctccgtggcccgccccccgcccatcctcaactgggacacagacctgacgggcctg
tcacataataggagttcggtgggcgggtcagtctccacccacttctccctgcaccccctg
aggagtatgaacgggatgaggctggactgtctggtgaggcaccgtgctctgaaggaaccc
cgcaggatcaccaacaacctggtggtgcactatcctcctaatgcagagatctctgggttt
aatcataactggtatgctggtctggagggagctgccctcagctgtgtcagtggaggaaac
cccaaaccacagagtttcacctggaccaggaagggtggagacttaccagagggcgttacg
gcagggaatggatccctgctgttcaataggcccctcggtttgacagacgctggtatctac
caatgtgtggcctataacgttgtggggaccgggaaagcagaggtggagatcactgtgacg
gagtttcctcagaagccggtgtttttcaacagtctcctgatgatcatagttggcggggtg
gctggaggactgctactcatcatggtcatcatagtaatctcagtgacccgtcaccacaaa
cgcaaaaacaagaaactggagagagaattgaatgtgaagaatgaggagatcagtacactc
tccaggcaggcctctttcaggagagtcaactcagtcagtacggatgctagaggacagatg
gaggagaatatccctctcagagtggaggggacactgcggaccagtctgtcctctctaggg
gatccagggcgcatcagggacagtcgctctactctggtagggggaggtggactagacaac
ctgggtcgacctgttctgaacaactcttcacgacgagggagggagaacagagccatggac
agagaggaggagaacagactcagggtggagtcatacgtacggaatagcactatgtctttg
ggaacccgtctccacctgccaatccaaccctctcccttcccaatggaacagtccaccagg
ctgctgaggtccctgaacggcagcgtcatcatcccaacagaggggggtttacatgcacgg
aactcccctctcagctgcagctaccctcctgtcacagacgacgaacaggaggagggtgaa
agtgtggagggggagcgggggacaagctccaggatgagtcgtttagatcaggggaggtca
gaggaccaggacaacagttctcagatctcagacgcggaacgtggacacaaccatcacttc
cagcagaacaacggaacgctgagacccaaaccccggcccaacggcatcccatccccacac
gcctccctcatccataaggcccagattgtatag
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