Oncorhynchus nerka (sockeye salmon): 115134519
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Entry
115134519 CDS
T07952
Name
(RefSeq) G/T mismatch-specific thymine DNA glycosylase-like isoform X1
KO
K20813
thymine-DNA glycosylase [EC:
3.2.2.29
]
Organism
one
Oncorhynchus nerka (sockeye salmon)
Pathway
one03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
one00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
115134519
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
one03400
]
115134519
Enzymes [BR:
one01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.29 thymine-DNA glycosylase
115134519
DNA repair and recombination proteins [BR:
one03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
115134519
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UDG
Motif
Other DBs
NCBI-GeneID:
115134519
NCBI-ProteinID:
XP_029524439
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All DBs
Position
LG9a:complement(37058430..37069901)
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AA seq
436 aa
AA seq
DB search
MEEKQYTSLTVPTDYLQQWYQSTQQHPQAQHVMQYHNTGHMGHYMEGSREDRVMTELSVH
QELPVHQELDFHHDFLGHQEPIVQHHQPVDTSQAPMPGKRKRGRPPKQKPGEGQPQEEHD
QAEALKKAKRTLNRFNGMSVDEVMAKTLPDIIDHNLDILIIGINPGLLSAYKGRHYPNPG
NHFWKCLFLSGLTDEQLNHMHDQNLPEKYGIGFTNMVERTTPGSKDLSSKEFREGGHQLV
EKLKKYKPLIAAFNGKCIYEIFSKEIFGVKAKKLEFGLQPYTIPETETVCYLMPSSSPRC
AQFPRAQDKVHFYIKLKELRDKIKGVAPVAREVQETEYHFDLGLAKEDAKRMAIKEEQVD
PEYENCGGASQDAKQSTSYCNISSTKETGMPSKDQATAMSHMPYDQWMTQSFADQIPDIS
CNSSNVAQPQLGAETF
NT seq
1311 nt
NT seq
+upstream
nt +downstream
nt
atggaagaaaagcagtatacgtcactgacggttcctacggattatctccaacagtggtac
cagtccacccagcagcacccccaagctcaacatgtgatgcagtaccataacacaggtcat
atgggccattacatggagggatccagagaggaccgggtcatgacagagctgtcggtccac
caggagctcccagtccaccaagagctggacttccatcatgacttcctcggccatcaagag
ccaattgtccaacatcatcagcctgtggatacatcacaagctccaatgccagggaagaga
aagagaggtaggcctcccaaacagaagccgggggagggccaaccgcaggaggaacacgat
caggcagaagctctgaagaaagccaaaaggacccttaaccgcttcaatggcatgtcagtg
gatgaggtcatggccaaaaccctgccagacattattgaccacaacctcgacattttgata
attggtatcaatccaggactattgtcagcctacaagggacgacattacccaaacccagga
aatcatttttggaaatgcctgttcctctctggtcttactgatgagcaactcaaccacatg
cacgatcaaaacttaccggagaagtatggcattggctttaccaacatggtggagaggaca
acgccaggaagcaaagacctctcaagcaaagagtttcgtgaaggaggccatcaattggta
gagaagctgaagaaatacaaaccgctaattgcagctttcaatggaaaatgtatttacgaa
attttcagcaaagagatctttggagtgaaggcaaagaaactcgagttcggcttacagccg
tacacaatcccagaaaccgaaacggtgtgctacttgatgccctcgtcaagcccccgctgt
gcccagttcccccgcgctcaggacaaggttcacttctacatcaagctgaaggagctacgg
gacaagatcaagggtgtggccccagtcgcccgtgaggtgcaagagacagagtaccacttc
gacttgggacttgccaaagaggatgctaagaggatggccatcaaggaagagcaggtggat
ccggagtacgagaactgcggtggggcgtcccaggatgcaaagcaaagcaccagctactgc
aacatttcctccaccaaagagaccggaatgcccagtaaggaccaagctacagcaatgagc
cacatgccatacgaccagtggatgacacagtcgtttgcggaccagataccggacattagc
tgtaacagtagcaatgtagctcaacctcagttgggagcagaaaccttttga
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