KEGG   Oncorhynchus nerka (sockeye salmon): 115137354
Entry
115137354         CDS       T07952                                 
Name
(RefSeq) LOW QUALITY PROTEIN: lysine-specific demethylase 2A-like
  KO
K10276  F-box and leucine-rich repeat protein 10/11 [EC:1.14.11.27]
Organism
one  Oncorhynchus nerka (sockeye salmon)
Pathway
one03083  Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:one00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03083 Polycomb repressive complex
    115137354
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03000 Transcription factors [BR:one03000]
    115137354
   04121 Ubiquitin system [BR:one04121]
    115137354
   03036 Chromosome and associated proteins [BR:one03036]
    115137354
Enzymes [BR:one01000]
 1. Oxidoreductases
  1.14  Acting on paired donors, with incorporation or reduction of molecular oxygen
   1.14.11  With 2-oxoglutarate as one donor, and incorporation of one atom of oxygen into each donor
    1.14.11.27  [histone H3]-dimethyl-L-lysine36 demethylase
     115137354
Transcription factors [BR:one03000]
 Eukaryotic type
  Zinc finger
   CXXC CpG-binding proteins
    115137354
Ubiquitin system [BR:one04121]
 Ubiquitin ligases (E3)
  Multi subunit type E3
   SCF complex
    Target recognizing subunit (F-box)
     115137354
Chromosome and associated proteins [BR:one03036]
 Eukaryotic type
  Histone modification proteins
   Histone demethylases
    115137354
   Polycomb repressive complex (PRC) and associated proteins
    Noncanonical PRC1 (PRC1.1)
     115137354
SSDB
Motif
Pfam: PHD_4 zf-CXXC F-box-like JHD F-box JmjC DUF7885 Cupin_8 Roughex
Other DBs
NCBI-GeneID: 115137354
NCBI-ProteinID: XP_029529497
LinkDB
Position
LG11:38915500..38940161
AA seq 1257 aa
MEDKRRPRFSKRLRSGTRRRYHDDGISDDEIEGKRTFDLEEKLTSERFTSDRVKRMEGKD
LTFEYIQRGGLRDPIIFEKPDGLGIKMPDPDFSVNDVKIFVGSRRMMDVMDVSTQKGIEM
SMAQWRRYYETPPSQRDKLYNVISLEFSHTKLENLVQRPASVDIIDWVDNMWPRHLKERQ
RDSTNSITDMQYPKVQKYCLMSVQGCYTSDFHIDFGGSSVWYHILRGGKVFWLIPPTPQN
LELYEDWVLSGKQGDIFLGDKAQDCQRIELKQGYTFMIPSGWIHAVYTPVDTLVFGGNFL
HSFNIPMQLNIYSIEDRTRVPAKFRYPFYYEMCWYVLERYLFSLTNTSYLTPDFQKHSLG
IGLTRDPSTCESVNGHTQEEDEEEAPSTPGFAGVKVHLTPFELEGLWNLLGKLESLPSQK
NCVPAGIHDAPALLHDIRALLKEHANDIPKLSYTGTPIVKWPKRPSWYQPPPPPPPVARP
KLSATVVTPRPQKPASSMSVLRRRRVRCKRCEACVRTECGDCNFCRDMKKFGGPGKLKQT
CVLRQCLAPGLPLSVVCEICAEGNQEGGEGPVFALTLMECSNCAQIAHPACLKVTGDGVV
NTDLPSCWECPKCVLGITDTEVKEDKNKMLHAKRKSSSYLDGRIAKIYRRRGHSRDDDDS
GSDDDDDDEGSRGGGGGAGQKMSGPRPRGSGSASRRGYGTGRRGIWRGSSHRGGAGRGSG
LAPHSSLKMRRGRGGLGAGRGDREGGRRERGGRVRLRGGTRMQRRRDESEDDDDDDDEED
DDSEEDRQHHHRQRRRRRRTDDDEEDDDEEDSSARDLEGEDEDVADEDEDEEDDENRSDS
EPEPPVLLVSDLNDDLLNGSYLTVTLQRPPRAKRHPGSIVPKLEAAMSPRTHGGGPGYVQ
HKTLGKTRHKNGTVAAGNGLAQPAKNPVGRPPRHRINNPHGDTADRERERDTASHSYSDS
SASPTPPPHSSHSPSSLLSLPSFKDVGNEKGGEKEVWVAVFRYLSRAELVSCMAVCKAWY
KWSCDKRLWSGVDVSRCPSLSSQAVQGIIKRQPTSLDLSWTPVSKKQITLLIHRLPGLKE
LMIAGCSWSSMSALSTPSLPCLRTLDLRWAEGVKDTQIRDLVIPPGCDSRSRLRGCVALR
LAGLDISDSTLRLILRHMPLLERLDLAHCRDLTDQSICLLTAAGTNTRNTLMEINLAGCN
KLTDGCLAYLKRASGLALLDLRGCKGVTLRGCEGFISDLSHCVLFCMTEEKLIQRIS
NT seq 3774 nt   +upstreamnt  +downstreamnt
atggaagataagcgtcgaccaagattcagcaagcggctgcggtcgggcacgcggcggcgc
taccatgacgatgggatctcggacgacgagatcgaggggaagaggacctttgacctggag
gagaagctgacgagcgagaggttcacctcggacagggtcaaacgcatggaggggaaagac
ctcacgtttgagtacatccaaagaggtgggttgagggacccgatcatctttgagaagcca
gacggactgggcatcaagatgccagatccagacttcagtgtgaacgacgtcaagatattt
gtcggcagcaggcgtatgatggatgtgatggatgtcagtactcagaagggtatagagatg
tctatggcccagtggagacgttactacgagacgcccccctcccagagggacaaactctac
aacgtcatcagcctggagtttagccacaccaagctggagaacctggtccagaggcctgca
tcggtggacatcatagactgggtggacaacatgtggcctcggcacctgaaggagagacag
agagactccaccaactccatcacagacatgcagtaccccaaagtgcagaagtactgtcta
atgagtgtgcagggctgctacacatcggacttccacatagacttcggcggttcatcggtc
tggtaccacatactgcggggaggcaaggtgttctggctgatcccgcccacgcctcagaac
ctggagctatatgaggactgggtgttgtcggggaaacagggagacatcttcctgggagac
aaggcccaggactgtcagaggatcgagctgaagcagggctataccttcatgatcccctca
ggttggatccacgctgtctacactccagtggacaccctggtgtttgggggaaacttcctc
cacagcttcaacatccccatgcaactcaacatctacagcatcgaggacaggacacgggta
ccagccaagttccgttacccgttctattatgagatgtgttggtacgtgctggagagatac
ctcttcagtctgaccaacacctcctacctcacgcctgacttccagaaacactccctgggc
atcggtcttaccagagacccctccacctgtgagtcagtcaacgggcacacccaggaggag
gatgaagaggaggctccctcgaccccgggctttgccggggtgaaggttcacctcacgccc
tttgagttggaggggctgtggaacctgctggggaagttggagtcgctgccctcccagaag
aactgtgtcccggctggcatacacgatgctcccgctctgctgcacgacatccgggccctg
ctgaaggagcacgctaatgacatccccaaactgtcctacactggcacgcccatcgtcaag
tggcccaagaggccgtcgtggtaccagccccctccccctcctcccccggtggctcgtccc
aagctgtctgccacggtggtgaccccgcgaccccagaagcccgcctcctccatgtctgtg
ctgcggcggcggcgcgtgcggtgtaagcgctgcgaggcgtgtgtcaggacggagtgcggg
gactgtaacttctgcagggacatgaagaagttcggcgggccggggaaactcaaacaaacc
tgcgtgctccgacagtgtctggcgccgggtctgcccctgtcagtggtgtgtgagatctgt
gcagaggggaaccaggagggaggagaggggccagtcttcgccctcaccctcatggagtgt
tccaactgtgcccagatagcccaccccgcctgcctcaaggtaacaggggatggtgtggtg
aatacagatctgcccagctgctgggagtgtcccaaatgtgttctgggaatcacagacact
gaggtgaaggaggacaagaataaaatgttacacgcgaaacgcaagtcttcttcgtatctc
gacggccgcatcgccaagatctaccgtcgccgtggtcacagccgagacgacgacgactcg
ggcagcgatgatgacgatgacgatgaaggttctaggggtggaggaggcggcgcgggacag
aagatgtccgggccacgccctcgcggcagtggctccgcctctcggagaggctatgggact
gggaggcggggcatttggagaggctcctcccacagaggaggggcaggccgcgggagtggg
cttgcccctcactcctccctgaagatgaggcgcggcagaggagggctaggggcgggccga
ggggatagagagggggggcgtagggagaggggcgggagagtgcgcctccggggaggcacc
aggatgcagagacgcagggacgagtcagaggatgatgatgatgatgacgacgaggaagat
gacgacagcgaggaagatcggcagcatcaccaccggcaacgccgcaggaggaggagaacg
gacgacgatgaggaagacgatgatgaggaagacagctcggcccgggacctggagggggag
gatgaggacgtagcggatgaagacgaggatgaggaagacgatgagaacaggtcagactct
gaaccagagcctcccgtcctcctggtgtctgaccttaacgacgacctcctaaacggctca
tacctgacagtgaccctacagcgcccccccagggccaaacgccaccccggctccatcgtg
cccaagctggaggccgccatgtctcccagaacccacggcggcggtccaggttacgtccag
cataaaaccctcgggaagacgcggcacaaaaacggcacggtcgccgccggcaacggcctg
gcccagcccgccaagaatccagtcggccggccgcctcgtcaccgtatcaacaatccccac
ggcgacacagcagacagggaaagagagagggacactgcctctcattcctactctgactcc
tcggcctcccccacccctcctccccactcctcccactctccttcctcgctcctgtcgctt
ccctccttcaaggatgtaggaaacgagaaaggaggggagaaggaggtgtgggtggcggtg
ttccgttacctgagccgagccgagctggttagctgtatggctgtctgtaaggcctggtac
aaatggagttgtgacaagcgtctgtggagtggtgtggatgtatcgcggtgtccctccctc
tcctcccaggccgtgcagggcatcatcaaacgccagcccacctccctggacctttcctgg
acccccgtgtccaagaaacagatcaccctgctcatacaccgcctgccaggtctgaaggag
ttgatgatagcaggttgctcctggtcgtccatgtcagccctgtccacccccagcctgccg
tgcctccgtaccctggacctgcgctgggcagagggggtcaaagacacccagatcagggac
ctggtcataccaccaggctgtgacagtcggtctcggctgcgtggctgtgtggcgctgcgt
ctagccggcctggacatcagtgactccaccctgaggctgattctccgtcacatgcccctg
ctagagcggctggacctggcccactgcagggacctcacggaccagtccatctgcctgctc
accgccgccggcacaaacacacgcaacacgctcatggagatcaacctcgcaggctgtaac
aagctgacggacggctgtctggcgtacctgaagagggcgtctggcctggcgctgctggac
ctgcggggctgcaaaggtgtgacgctgcggggctgtgagggcttcatctcggacctctct
cactgcgtcctgttctgtatgacggaggagaaactcattcagaggatatcgtaa

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