Oncorhynchus nerka (sockeye salmon): 115143925
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Entry
115143925 CDS
T07952
Name
(RefSeq) pleckstrin homology domain-containing family M member 1-like isoform X1
KO
K23282
pleckstrin homology domain-containing family M member 1
Organism
one
Oncorhynchus nerka (sockeye salmon)
Pathway
one04140
Autophagy - animal
one05132
Salmonella infection
Brite
KEGG Orthology (KO) [BR:
one00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
115143925
09160 Human Diseases
09171 Infectious disease: bacterial
05132 Salmonella infection
115143925
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
one04131
]
115143925
Membrane trafficking [BR:
one04131
]
SNARE
SNARE associated proteins
Others
115143925
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RH_dom
RUN
PH
PH_11
Motif
Other DBs
NCBI-GeneID:
115143925
NCBI-ProteinID:
XP_029540255
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All DBs
Position
LG16:3694829..3722023
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AA seq
1061 aa
AA seq
DB search
MLATQTPDTGPEAEDVKQWIKEKLAWSLKALQKRYVMTDAVVTSEDGDANLLCSSLEAVF
IHGIKSKYVRSKSGGHGRKGGSRGPLPQPVFWSLLKTITHRDVIVELEMLSFVGTEVGRC
RAWLRLALNHGLMECYLASLFREGSNLQAYYQPSALLLDPEEREVLLSYIQGLASLVFNL
SYKSAVLNEWTTTPLALAGLCPATQADAVDLPSLTKHKDSWDTMSLSSGGSDTVEVQHVG
AGVLGRVIGGVSGGRTPLNSSNLSLDTTGSSQLSSSLSSDPKSPDKDPWPCELEISAGLE
NDVNAKRPLKDDLADFRESATFSQDSMHEDLYVSTPGADHLSENTASSGSDGEAQGPFTP
LTGSSNPASVGSDQEEPSTKTHVPSEVYLHTEVPSSDCVERTAITPQLPVTETPQEKKTE
DSAKSTSAPSAHTNLCLTTSVHSRRMSTDSITHSHSWISEDDIYKPHLEELIDPDESLLG
SGPACVNGLTSPPPEPETPQSPPSVVHRRQIGLSNPFRGLLKLGHLERRGAVGLWRDYYC
ELSPFEFRLYLNAEERTCCDNCSLLRCEDARVTSAEGRFDLAFPGKRLHLRAANHDEAED
WVDRIAEAVSKCRPLHLLDDHSEVLQPIDSFVILEEPPKSSPSSPSVPTSPEQGGTVVEQ
EQQPPLELDWTRPTDPESDAIKEAVLYLSQDAEAHNWTPLVFSLSLETLNGFRVQDGRKV
LCCSHPIEGIRDVVPDVSLGGPAFFRVVTTGDTLKLRAKSPEEAHAWRGLIRGALDSYLE
SGENGEPNSPGLATGAGGNIHRLVQHRLKGGGVLLAHLYTVPTEKGLDLQGFKCAGCPKL
VGVSRGKARLCEFSGKYYCEACHQGDVIAIPSRMVHNWDITPREVSRQALELLAQVEHEP
LLNLHLLNPNLWEHVEAMAQAHSLRQRLQLVGKYLLTCRSGPCKNIQTRLGLRTYLLESS
HLYSVMDLQQIAEGTYVAYLNMLILFASNHVQQCDLCTQRGYICQICHASDIIFPFQFDT
TVRCKECKAMFHATCKAESSSCPRCLRIQRYLESDLQDCSV
NT seq
3186 nt
NT seq
+upstream
nt +downstream
nt
atgctagccacacagaccccagatactgggccagaggcggaagacgtcaagcagtggatc
aaagagaagttggcgtggtcactcaaggctctgcagaagcgctacgtgatgaccgatgcc
gtggtaaccagcgaggatggcgacgccaacctgctgtgctcttctctggaggcagtcttt
atccatggcatcaagagcaaatatgtccgctccaagtccggaggacatggcaggaaaggg
gggtcccggggacccctcccccaacctgtgttctggagccttctcaagacgatcactcac
cgtgacgtgatcgtggagctggagatgctgagctttgtgggtacggaggtgggtcgctgc
cgggcttggctgcggctggccctcaaccacggcctgatggagtgctacttggcctccctg
ttccgtgagggctccaacctgcaggcctactaccagccctccgccctgctcctggaccct
gaggagcgtgaggtgctgctcagttatatccagggcctggcctccctggtcttcaacctt
tcgtacaagtcagccgtgctcaatgagtggaccaccaccccactggctctggccggcctc
tgccccgccacccaggccgacgctgtcgaccttcccagtctcaccaaacacaaggattct
tgggatacgatgtcactgtcgtccggcggttcggatacggtcgaagtgcagcatgtgggg
gcaggggtgctagggagggtgattggtggagtctcagggggtaggacccctctgaattct
tctaatttgagcctggacaccacagggtcatctcagctctcctccagcctaagctcagac
cccaagagcccagacaaggatccctggccatgtgaactggagatctctgccggcctggag
aacgatgtcaatgccaagaggcctcttaaagatgatctggcagacttcagggagagtgcc
accttcagtcaggactccatgcacgaggatttgtacgtttccactccgggtgcagaccac
ctctcagagaatacggcctccagtggctctgacggcgaggcccaggggccattcacaccc
ctcactggctcctctaaccctgcttcagtggggtcagaccaggaggagccgtccactaag
acccatgtcccttccgaagtgtacttgcacactgaagtgccctccagtgactgtgtggag
agaacagcgataacgcctcagctgcctgtcacagagacgccacaggagaaaaagacagaa
gattccgctaagagcacctcggcgccttcagcccacacaaacctatgccttactaccagt
gtgcatagcaggaggatgtctacagactcaatcacacattcccactcctggatctctgag
gatgacatctataagccacaccttgaggaactgattgaccccgatgagtcattactaggg
tctggcccagcttgtgtgaatggattgacctctccccctccagagcctgagactccccag
tctccccccagcgtggttcaccgcaggcagataggcctgtccaaccctttccgtgggctg
ctgaagctgggccatctggagcggcggggcgctgtgggcttgtggcgggactactactgc
gagctctcgcccttcgagttccgcctctacctgaacgcagaggagcgcacctgctgtgac
aactgctccctgctgcgttgcgaagacgcccgcgtcacctcggccgagggccgcttcgac
ctggccttcccagggaagaggctccacctgcgggcagccaaccacgacgaggcagaggac
tgggtggaccgcatcgcagaggccgtcagcaagtgccgcccgttgcacctccttgacgac
cattcagaggtgctgcagcccattgacagctttgtcatcctggaagagcccccaaaatct
tccccttcgtccccctccgtacccaccagccctgagcaagggggtactgtggttgagcag
gagcagcagccgccacttgagctagactggacgcgtcccacagaccctgagtcagacgcc
attaaggaggcggtgctgtacctatcccaggacgcagaggctcacaactggactcctctg
gtcttctccctctccttggagactctcaacggcttccgggtacaggatgggcgaaaggtg
ctgtgctgctcccaccccatcgaggggatacgggacgtggtcccagatgtttctctgggg
ggaccggccttctttagggtcgtaacgaccggagatacgctcaagctgagggccaagagc
cctgaggaggcgcatgcctggaggggcctcatcaggggagccctggactcctacctggag
agtggagagaacggggagcctaatagccccgggttagccactggggcaggggggaacatc
cacagactggtgcagcatagactgaaggggggcggggtgctgctggcccatctatataca
gtgcccacggagaagggcctggaccttcagggcttcaagtgtgcaggttgtccaaagctg
gtgggggtctcccggggaaaagccagactgtgcgagttctcagggaagtactattgcgaa
gcttgtcaccaaggtgacgtcatcgccataccctcccgcatggtgcataactgggacatc
acgcctcgcgaggtctccagacaggccctcgaactgctggctcaggttgaacatgagcct
ctgctcaatcttcaccttttgaaccctaacctgtgggagcatgttgaggccatggcccag
gcacacagtctcagacagaggctgcagctggtaggaaagtacctgctcacctgccgcagt
gggccatgcaagaatattcagaccagactgggcctaaggacatacctgttagaatcaagc
catctctacagtgtcatggacttacaacagatagcggagggaacatatgtggcctacttg
aatatgttgatcctgtttgcctccaaccacgttcaacaatgtgacctttgcacccagagg
ggctacatctgccagatctgtcatgccagtgacatcatcttccccttccagttcgacacc
actgtcaggtgtaaagagtgtaaggcaatgtttcacgcaacctgcaaggccgagtcgtcc
tcctgtccacgatgcctgcgtattcagaggtacctcgagagcgatctgcaggactgctct
gtttga
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