Oncorhynchus nerka (sockeye salmon): 115144301
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Entry
115144301 CDS
T07952
Symbol
lsm3
Name
(RefSeq) U6 snRNA-associated Sm-like protein LSm3
KO
K12622
U6 snRNA-associated Sm-like protein LSm3
Organism
one
Oncorhynchus nerka (sockeye salmon)
Pathway
one03018
RNA degradation
one03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
one00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
115144301 (lsm3)
09123 Folding, sorting and degradation
03018 RNA degradation
115144301 (lsm3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
one03019
]
115144301 (lsm3)
03041 Spliceosome [BR:
one03041
]
115144301 (lsm3)
Messenger RNA biogenesis [BR:
one03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
115144301 (lsm3)
mRNA degradation factors
5'-3' decay
Lsm complex
115144301 (lsm3)
Spliceosome [BR:
one03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
115144301 (lsm3)
Complex C
U2 snRNP components
115144301 (lsm3)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
LSM
TIG_SUH
YfkB
vATP-synt_E
DUF8043
Peptidase_M16_M
RimP_C
Motif
Other DBs
NCBI-GeneID:
115144301
NCBI-ProteinID:
XP_029541089
LinkDB
All DBs
Position
LG2:complement(59919684..59922900)
Genome browser
AA seq
102 aa
AA seq
DB search
MADEVEQQTTTNTVEEPLDLIRLSLDERIYVKMRNDRELRGRLNAYDQHLNMILGDVEET
VTTVEIDEETYEEIYKSTKRNIPMLFVRGDGVVLVAPPLRVG
NT seq
309 nt
NT seq
+upstream
nt +downstream
nt
atggcggatgaagttgaacagcaaacgaccaccaacacagtggaggagcccctggatctg
atcagactcagtttggatgaaaggatatatgttaagatgagaaacgaccgagaactcagg
ggcagattgaacgcctacgatcagcacttgaacatgatcttgggagatgttgaggaaacg
gtgacaacagtagagattgatgaggagacgtatgaagaaatttacaagtcaacgaagagg
aacatccccatgttgtttgtgagaggtgacggagtcgtcttggtcgctcctcctctcagg
gtgggctag
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