Oncorhynchus nerka (sockeye salmon): 115144708
Help
Entry
115144708 CDS
T07952
Name
(RefSeq) G/T mismatch-specific thymine DNA glycosylase-like isoform X1
KO
K20813
thymine-DNA glycosylase [EC:
3.2.2.29
]
Organism
one
Oncorhynchus nerka (sockeye salmon)
Pathway
one03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
one00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
115144708
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
one03400
]
115144708
Enzymes [BR:
one01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.29 thymine-DNA glycosylase
115144708
DNA repair and recombination proteins [BR:
one03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
115144708
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UDG
Motif
Other DBs
NCBI-GeneID:
115144708
NCBI-ProteinID:
XP_029541595
LinkDB
All DBs
Position
LG17:1620011..1628946
Genome browser
AA seq
456 aa
AA seq
DB search
MEEKLYGSVPVPSEYLQQWIQSAQQLQALQGQYPGINHHHSPHPHYTEEPREERVMAHAH
MAVNDELMAQQEPANLAKAPAKKRGRTAQPKEPKPPKMPKPPKAKPGPKPKKGKEGQEAD
GTQEKMDETVQKVRKKRDRFKGMTEDEVMSRTLTDILDYNLDYVIIGINPGLVAAYVGRW
FPGPGNHFWKCLFLSGFTDEQLNHMSDTSLPAKYKIGFTNMVARTTPGSKDLSTKELREG
ALILVEKLKKYKPLIAVFNGKCIYEMFCREMFGKKPKKLDFGLQPHKIPDCEVALYLMPS
SSARCAQFPRAQDKVHFYIKLRELRDQLRGVARTDDIQELEYSFDLGLAKEDAKRMAIKE
EAYDPGYEAAFGGAYGEGGPGPEEGQSNGNGHCNFSSAENTVSDAVEKADTSQLPAATAA
ATEGQLPDGQWMMQSFADQIPDIGGSKEPQAWAGNV
NT seq
1371 nt
NT seq
+upstream
nt +downstream
nt
atggaagaaaagctgtatggatcagtgcctgtcccctcggaatatcttcaacagtggatt
cagtcagctcaacagcttcaggctctgcagggccagtatccgggcatcaaccatcaccac
agtcctcaccctcactacacagaggaaccaagagaggagagagtaatggcacatgcacat
atggctgtcaatgatgagctcatggctcagcaagaacctgccaacttagcgaaagctcca
gcgaaaaagcgagggagaacggcacaaccaaaggaacccaagccacccaaaatgcccaag
ccccccaaggccaaaccgggccccaagcccaagaaaggcaaggagggtcaagaggctgac
ggcacgcaggagaagatggacgagaccgtccagaaggtcaggaagaaacgagaccgattc
aagggcatgacggaagatgaggtcatgagcagaactctgactgacatccttgattacaac
ttggactatgtcattattggaatcaacccaggtctggtggcagcctatgttggacgatgg
ttccctggccctggaaaccatttctggaagtgcctgttcttgtctggattcactgatgag
cagctcaaccacatgagtgacaccagcctgccagcgaaatataagattggtttcaccaac
atggtggcaaggacaacgcctggaagcaaagacctttcaaccaaagagctacgtgaaggt
gccttaattcttgtggaaaagctgaagaagtacaagcctctcatagctgttttcaatgga
aaatgtatctatgaaatgttctgcagagagatgtttggaaaaaagcccaagaaacttgac
tttggtctgcagccacacaagatacctgactgtgaagtggcgttgtatttgatgccgtcg
tccagtgcccgctgtgcccagttcccccgtgcccaggacaaagtgcacttctacatcaag
ctgagggaattaagggaccagctcaggggcgtggccagaacagacgacattcaggagttg
gagtacagctttgacctgggactggccaaggaggacgccaagaggatggcgattaaagag
gaggcgtacgacccgggctacgaggcggcctttggcggcgcatatggcgagggtgggccg
gggcctgaagagggccagagcaatggcaacgggcactgtaacttctcgtcggcggaaaac
acagtttcagacgctgtcgagaaggcagacacttctcaacttcctgccgccaccgccgct
gccacagagggacaactcccagacggacagtggatgatgcagtcttttgctgatcagatt
ccagacattgggggctctaaagaaccccaggcatgggcgggcaatgtataa
DBGET
integrated database retrieval system
