Oncorhynchus nerka (sockeye salmon): 115145195
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Entry
115145195 CDS
T07952
Symbol
ptprf
Name
(RefSeq) receptor-type tyrosine-protein phosphatase F isoform X1
KO
K05695
receptor-type tyrosine-protein phosphatase F [EC:
3.1.3.48
]
Organism
one
Oncorhynchus nerka (sockeye salmon)
Pathway
one04514
Cell adhesion molecules
one04520
Adherens junction
one04910
Insulin signaling pathway
Brite
KEGG Orthology (KO) [BR:
one00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04514 Cell adhesion molecules
115145195 (ptprf)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04520 Adherens junction
115145195 (ptprf)
09150 Organismal Systems
09152 Endocrine system
04910 Insulin signaling pathway
115145195 (ptprf)
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
one01009
]
115145195 (ptprf)
Enzymes [BR:
one01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.3 Phosphoric-monoester hydrolases
3.1.3.48 protein-tyrosine-phosphatase
115145195 (ptprf)
Protein phosphatases and associated proteins [BR:
one01009
]
Protein tyrosine phosphatases (PTPs)
Class I PTPs (Classical)
Receptor PTPs
115145195 (ptprf)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Y_phosphatase
fn3
I-set
Ig_3
Ig_DSCAM-DSCAML_C
Pur_ac_phosph_N
Ig_2
fn3_2
ig
Tc-R-P
PTP-SAK
Interfer-bind
DSPc
V-set
Y_phosphatase3
PTPlike_phytase
PTP-NADK
C2-set_2
Fn3_PTPRU
Fn3_ELFN
Insulin_TMD
Motif
Other DBs
NCBI-GeneID:
115145195
NCBI-ProteinID:
XP_029542404
LinkDB
All DBs
Position
LG17:25768828..26191575
Genome browser
AA seq
1922 aa
AA seq
DB search
MAPHHRRAEYPLARGAVLTLLLGCLALPSPSHADSMPSFIKSPDDQTGISGGVASFVCQA
VGDPKPRITWMKKGKKVSSQRFEVIEFDDGSGSVLRIQPLRTHRDEAIYECTAINSVGEI
NTSAKLTVLEEDQIPHGFPTIDMGPQLKVVERTRTATMLCAASGNPDPEISWFKDFLPVD
INSSNGRIKQLRSGGTPIRGALQIENSEESDQGKYECVAVNSAGTRYSAPANLYVRDQRE
VRRVPPRFSIPPNNHEVMPGGSVNLTCVAVGAPMPYVKWMMGVVDLTKEEEMPIGRNVLE
VTNIRQSANYTCVAISSLGMIETTAQITVKALPKPPTSLIVTETTATSVTLTWDSGNPEP
VSYYVIQYRAKVSDNGFQEVDGVATTRYSIGGLSPYSEYEFHVMAVNNIGRGPPSSLVDT
RTSEQAPSSPPLAVQARMLSASTMLVQWEPPEEPNGQIRGYRVYYSSDLGAPLSAWHKHN
TDDSRLTTISGLTTDITYSLRVLGFTSVGDGPPSDVLQVKTQQGVPAQPSSFEAEAELDT
RIMLSWLWPVQDQITKYELMYWEANSGNKLHVTFLPAGSYAVEGLKPDTLYMFSLAARSE
MGLGVYTQLIEARTAQSTPSAPPQEIVLLSLSSTSIKVSWRAPPAASRHGDIVRYTLAYK
AATGEDLERHELSDIGADVSSYILEGLEKWSEYQVWVRAHTDVGPGPESPAARIRTKEDV
PGAPPRKVEADALNSTALRVMWKPPLQVKQHGQIRGYQVVFSRLENGAPRGQPNIMDVSL
PEAQETVITGLLPETTYSVTVAAYTTKGDGARSKAKVVTTTGAVPGRPTMMISTTIGNTA
LIQWQPPKEMVGEHMGYQLQYKRMEEESFTVKDFKKIEDHFTVTGLHKGATYIFKLCAKN
RVGNGEEYAKEITTPDDVPSSYPQNLSVVGLTTTTTKLAWEPPVLAERNGKIVQYVVVYR
DINSQQNHTNSTTETQMTIMGLQPDTTYDIRIRAFTSKGGGPISPSIQSRTMSTAMPEFT
KNFGVKAVMKTSVLLTWEVPETYKSQVPFKILYNQQSVEVQGNLKRKLITRLQPDTDYSF
VLMSRGNSAGGLQQQVSIRTAPDLLKTKPIQYQHDPEEGGKLTITLPKVPTTAPVRYYYI
VVVPVTPATLHRWENPEDMDLDELLEASSDQSLKRRQTQEFLRPYIAAKMDALPDTFPLG
DEKKYNGFYNKPLPGQQQYLCFVLAALKGHESQKTFAASPYSDPITVKLHSGMARHAEDP
EMLWVMGPVLAVVLIIIIVIAILLFKSKQERKRASPSAKDEHSVGVKDSLLAHSSDPVEM
RRLNYQTQGSSALSCPNTPRMMEHPFISTTDLANHIERLKANDGLRFSQEYESVDPGQQF
TWEHSNLEVNKPKNRYANVIAYDHSRVILTSVDGVPGSDYINANYIDGYRKQNDYIATQG
PLPETLSDFWRMVWEQRTNTIVMMTRLEEKSRVKCDQYWPSRGTETYGMIQVTMLDTVEL
ATYSVRTFTLYKNGSSEKREVRQFQFMAWPDHGVPEYPTPTLAFLRRVKACNPTDAGPMV
VHCSAGVGRTGCFIVIEAMLERMKHEKSVDIYGHVTCMRAQRNYMVQTEDQYVFIHEALL
EAATCGNTEVPARNLYAHIQKLTQVTPGGTVSAMELEFKKLSNSKAHTSRFISANLPCNK
FKNRLVNIMPFESTRVYLQPIRGVEGSDYINASFIDGYRQQKAYIATQGPLAETTEDFWR
MLWEHNSTIVVMLTKLREMGREKCHQYWPAERSARYQYFVVDPMAEYNMPQYILREFKVT
DARDGQSRTIRQFQFTDWPEQGVPKTGEGFIDFIGQVHKTKEQFGQDGPISVHCSAGVGR
TGVFITLSIVLERMRYEGVVDIFHTAKTLRTQRPAMVQTEDQYQLCYRAALEYLGSFDHY
AT
NT seq
5769 nt
NT seq
+upstream
nt +downstream
nt
atggcgccgcaccaccggcgggcagaatatcccctcgccaggggggccgtgcttaccctg
ctcctgggctgtctggccctgccatcaccatcccatgcagacagcatgcccagtttcatc
aagtctccagatgaccagacaggtatttcgggaggcgtggcatccttcgtatgccaggcg
gtgggcgatcccaagccacgcatcacttggatgaagaagggcaagaaagtcagctctcag
cgctttgaggtgatagagtttgacgacggctcagggtccgtcctgcgtatccagcccctg
agaacccacagggacgaggccatctatgagtgtactgccatcaacagcgtgggagagatc
aacaccagcgccaaactcaccgtcctggaagaggaccagattccccatgggttccccacc
atagatatgggaccccagctgaaagttgtagagcggacccgtacagccaccatgctgtgt
gctgccagtggcaaccccgacccagagatctcctggttcaaggacttcctccctgtagat
atcaacagcagcaatggaagaatcaaacagctccgctcaggtggtacaccaatcagagga
gctctccaaatagaaaacagcgaggagtcggaccagggcaagtacgagtgtgtggcggtc
aacagcgccgggacccgctactcggctccagccaacctatatgtgagagatcaacgagaa
gtgaggcgtgtgccaccccggttctccatccctcccaacaaccacgaggtgatgccgggt
ggcagcgtgaacctgacgtgcgtggcggtgggagcacccatgccctacgtcaagtggatg
atgggggtggtagacctgactaaggaagaagagatgcccattgggaggaatgttttggag
gtcaccaacattcgccagtctgccaactacacctgcgtggcgatatcgtcgcttggtatg
atcgagaccactgcacagatcaccgtcaaagccctgcccaagccccccacctccctgatt
gtgacggagaccacagccaccagcgtcactctgacctgggactccgggaaccctgagcct
gtgtcctactacgtcatccagtaccgggccaaggtctctgacaacggcttccaggaggtt
gacggagtagccaccacccgctacagcatcggagggctcagcccctactctgagtatgag
ttccacgtcatggcggtgaacaacattgggcgtggccctcccagcagcctcgtggacacc
agaaccagtgagcaggctccctcctctccaccgctggctgtacaggctcgcatgctcagc
gcatccactatgctggtccaatgggagcctcccgaggagcctaatggacagatcagaggt
taccgggtgtactatagctctgacctcggagccccgctgagtgcgtggcacaaacataac
actgatgacagcagactgaccaccatctcagggttgaccacagatatcacctacagcctc
agggtgctggggttcacctctgtaggggacggacctccgtctgatgtactgcaggtcaaa
acccagcagggagtaccagcccagccgtctagcttcgaggcagaggcagagttggacacc
cgcatcatgttgtcgtggctgtggcctgtccaggaccagatcaccaagtacgagctcatg
tactgggaggctaactctggcaataagctccacgtgaccttccttccagcggggtcctat
gctgtggagggtctgaagccagacaccctctacatgttctccctggctgctcgctctgag
atgggtcttggcgtctacacccaacttattgaggccaggactgcccagtccaccccctca
gccccgccccaggagatagtcctgctgagcctcagctccaccagcattaaggtgagttgg
agagcgccccctgcagccagccgccatggggacatcgtccgctacacactggcctacaag
gccgcaactggagaggacctggagcgccacgagttgtcggacatcggggcagacgtctct
agttacatactggagggcctggaaaagtggtcagaataccaggtgtgggtcagggctcac
acggacgtaggcccaggcccagagagccctgcagcccggatcaggaccaaggaggatgtg
cccggagcccctcccaggaaggtggaggctgatgccctgaactctacagccctgagggtg
atgtggaagccccccctccaggtgaaacagcatgggcagatcagggggtaccaggtggtc
ttctcacgactggagaatggagcgccacgaggccagcccaacatcatggacgtctcccta
cccgaggcacaggagactgtcataacaggcctgctccctgagaccacctactctgtcact
gtggcagcctacaccaccaagggagatggggcacgcagtaaggccaaggtggtcaccaca
acaggagcagtcccaggcaggcccactatgatgatcagcaccaccatcggtaacacagcc
ctcatccagtggcaacctccgaaggagatggtgggagagcacatgggctaccagctgcag
tacaaacgcatggaggaggagtcgttcaccgtaaaagacttcaagaagatagaagaccac
ttcaccgtcaccggcctgcacaagggcgccacctacatcttcaagctctgtgccaaaaac
cgggtgggcaacggggaggagtacgcaaaggagattaccacgccagacgatgtgcccagt
agctacccccagaacctgagcgttgtgggcctgaccaccaccacaaccaagctggcctgg
gagcctccggtgctggctgagaggaacgggaagattgtccagtacgttgtggtgtacaga
gatatcaacagccagcagaaccacaccaacagcacgacagagacccagatgaccatcatg
gggctgcagcctgataccacctatgatatcaggatcagggcattcaccagcaagggaggg
ggaccaatcagtcctagtatacagagcaggaccatgtctaccgccatgccagagttcacc
aaaaactttggtgtgaaagccgtgatgaagacgtcagtgctgctgacttgggaagtgcca
gaaacatacaagtctcaagtgcctttcaaaatactgtataaccagcagagtgtggaggtg
caggggaacctgaagaggaagctgatcacgaggctgcagccagacacagactacagcttt
gtgttgatgtctagagggaacagtgctgggggtctacagcagcaggtctccatcaggacc
gccccggacctgctcaagaccaaacccatccaataccaacacgacccagaggaggggggc
aagctcaccatcaccctgcccaaagtccccaccaccgcccctgtcagatattactacata
gtggtggttcctgtcacaccagccacactacacaggtgggagaaccctgaagatatggac
ttggatgagctcctggaggctagttctgaccagagcctgaagaggagacagacccaagag
ttcctcagaccctacatcgctgccaagatggatgctctcccagacaccttccctctagga
gacgagaagaagtacaacggcttctacaacaagcctctaccgggccagcagcagtacctc
tgtttcgtactggctgccctcaaaggccacgaatctcagaagacgtttgcggccagccca
tactcggaccccatcacagtgaagctccacagcggtatggctcgccatgctgaggaccca
gagatgctgtgggtcatgggccctgtcctggccgtcgtactcatcatcatcatcgtcatc
gctatcctgctcttcaagagcaaacaagaaaggaaacgagcatctccctctgccaaggat
gagcactctgttggggtgaaggactctctgctggcccactcctctgaccctgtggagatg
agacgacttaactaccagacacaaggttccagtgccctcagttgtccgaacactccaagg
atgatggagcaccctttcatctccaccactgatcttgctaaccacatcgagcgacttaaa
gccaacgacggactccgcttctcacaggagtatgagtccgtagaccctggccagcagttc
acgtgggaacactctaacctggaagtaaacaagccaaagaaccgctatgcaaatgtcatc
gcctacgaccactccagggtcatcctcacctccgtcgacggagtgccaggtagcgactac
atcaacgctaactacatagacggctacaggaagcagaacgactacatcgctacacagggc
ccgcttcctgaaaccctgagtgacttctggaggatggtgtgggagcagaggaccaacact
attgtcatgatgaccaggctggaggagaagtcaagggtgaagtgtgaccagtactggccc
agtcggggtacagagacctatgggatgatccaggtgaccatgttggacactgtggagctg
gctacctatagcgtacgcaccttcaccctctataagaatggctccagtgagaagagagag
gttcgtcagttccagttcatggcctggccggaccatggagtgcctgagtaccccaccccc
accttggccttcctgcgcagggtcaaggcctgcaacccgacagatgcagggcccatggtg
gtccactgcagtgctggtgtagggcggaccggttgcttcatcgtgatcgaagccatgctg
gagcgtatgaagcatgagaagtctgtggatatctacggtcatgtgacgtgtatgagagct
cagaggaactacatggtgcagacggaggaccagtacgtcttcatccacgaggccctgcta
gaggcagccacctgcggtaacacagaggtccctgcacgcaacctgtacgcacacatccag
aagctcacccaggtcacgcccggaggcaccgtttccgccatggagctagagttcaagaaa
ctgtctaactctaaagcacatacctcaagattcatcagcgccaacctcccctgcaacaag
ttcaagaaccggctggtgaatatcatgccttttgagtccacccgcgtgtatctgcagcct
atcagaggtgtggagggctccgactacattaacgccagcttcatcgatggatacaggcaa
cagaaggcctacatagccacccagggcccgctagcagagaccacagaggacttctggagg
atgctgtgggaacacaactctaccatcgtcgtcatgctcaccaaactcagagagatggga
cgggaaaagtgccatcagtactggcctgctgagcgttctgctaggtaccagtactttgta
gtggaccccatggctgagtacaacatgccccagtacatcctccgagagttcaaggtcaca
gacgccagggatggccaatccaggaccattcggcagttccaattcactgattggccagaa
caaggggtgccaaaaactggagagggctttatcgacttcattggccaagtgcataaaacc
aaggaacagttcggacaggatggacccatctctgtgcactgcagtgctggtgttgggcgg
actggtgtgttcatcaccctgagtatcgtgctggagaggatgaggtacgagggggtggtg
gacatcttccataccgccaaaacactgaggacccagagacctgccatggtgcagacagag
gaccagtaccagttgtgctacagggcagctctggagtaccttggcagctttgaccactat
gcaacataa
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