Oncorhynchus nerka (sockeye salmon): 115146249 Help Entry 115146249         CDS       T07952                                  Name (RefSeq) thrombospondin-1-like   KO K16857   thrombospondin 1 Organism one  Oncorhynchus nerka (sockeye salmon) Pathway one04115   p53 signaling pathway one04145   Phagocytosis one04148   Efferocytosis one04350   TGF-beta signaling pathway one04510   Focal adhesion one04512   ECM-receptor interaction one04518   Integrin signaling one04820   Cytoskeleton in muscle cells Brite KEGG Orthology (KO) [BR:one00001]  09130 Environmental Information Processing   09132 Signal transduction    04350 TGF-beta signaling pathway     115146249   09133 Signaling molecules and interaction    04512 ECM-receptor interaction     115146249    04518 Integrin signaling     115146249  09140 Cellular Processes   09141 Transport and catabolism    04145 Phagocytosis     115146249    04148 Efferocytosis     115146249   09143 Cell growth and death    04115 p53 signaling pathway     115146249   09144 Cellular community - eukaryotes    04510 Focal adhesion     115146249   09142 Cell motility    04820 Cytoskeleton in muscle cells     115146249  09180 Brite Hierarchies   09182 Protein families: genetic information processing    04131 Membrane trafficking [BR:one04131]     115146249   09183 Protein families: signaling and cellular processes    00536 Glycosaminoglycan binding proteins [BR:one00536]     115146249 Membrane trafficking [BR:one04131]  Endocytosis   Phagocytosis    Opsonins     115146249 Glycosaminoglycan binding proteins [BR:one00536]  Heparan sulfate / Heparin   Extracellular matrix molecules    115146249 SSDB OrthologParalogGFIT Motif Pfam:  TSP_C TSP_3 TSP_1 TSP1_spondin VWC VWC2L_2nd TSP1_ADAMTS EGF_3 TSP1_CFP_C cEGF Laminin_G_3 TSP1_CCN EGF Laminin_G_2 Motif Other DBs NCBI-GeneID:  115146249 NCBI-ProteinID:  XP_029544084 LinkDB All DBs Position LG18:complement(32195560..32205048) Genome browser AA seq 1172 aa AA seqDB search MKLIGVFLLLVLWTCEGSRVAESGDDNGVYDLFELVKVNKRHQGVTLVKGADPYSPAYKV LNADLIPPVPEISFRDLIDSIQAERGFLLLVNFKQFKKTRGSILTVEKNDGSGPIFEIIS NGKAQTLDVVYSTGNKQQVVSIEDADLATGHWKNITLFIQEDRAQLFVGCEEINISEIDV PIQKVLTHEVADIARLRIGKGAVKDRFMGVLQNVRFVFGTTLEAIMRNKGCQSSETLADV MTLDNPVNGSSPAIRTDYTGHKSKEIQQVCGFSCEDITSMFKELKGLGVVVKQLSNELNR VNKESTLLMNQMRIHSGVCLHNGIVHKDKDEWTVDGCTECTCQNSATVCRKISCPLMPCA NATVPDGECCPRCGTPSDYAEDGWSPWSEWTHCSVSCGRGIQQRGRSCDRINSNCEGTSV QTRDCYPQECDKRFKQDGGWSHWSPWSSCSVTCGEGVITRIRLCNSPTPQMGGRDCQGQG RETEVCQKSPCPIDGVWGPWSLWDTCSVTCGGGFQTRQRLCNNPTPKYGGKECQGDGKTS QLCGKEDCPIDGCLSNPCFAGAKCTSFDDGSWKCGACPVGYTGDGINCKDIDECKEVHDA CFTLNGVHRCENTEPGYNCLACPPRYSGQQPFGRGVEQATAKKQVCTPRNPCQDGSHDCN KNANCIYLGQFSDTMFRCECKPGYAGNGHICGDDTDLDGWPNKDLLCVENATYHCKKDNC PNLPNSGQEDHDKDGLGDACDHDDDNDGIPDDRDNCPMVYNPAQYDVDRDDVGDRCDNCV HESNPDQVDTDNNGEGDACAIDIDGDGILNERDNCPYVYNVDQRDTDGDGVGDHCDNCPL ENNPDQIDSDSDRVGDKCDNNQDIDEDGHQNNLDNCPYIPNANQADHDKDGKGDACDHDD DNDGIPDDKDNCRLAFNPDQLDSDGDGRGDVCKDDFDQDNILDIYDVCPENFAISETDFR RFQMVPLDPKGTSQIDPNWVVRHQGKELVQTVNCDPGIAVGFDEFNAVDFSGTFFINTDR DDDYAGFVFGYQSSSRFYVVMWKQITQTYWSHTPTRAQGYSGVSIKVVNSTTGPGEHLRN ALWHTGDTAGQVRTLWHDPKNIGWKDYTAYRWHLIHRPKSGLIRVVMYEGKRIMADSGNI YDKTYAGGRLGMYVFSQEMTYFSDLKYECKDS NT seq 3519 nt NT seq  +upstreamnt  +downstreamnt atgaagttgataggagtatttctccttttggtgctttggacttgtgagggcagccgggta gcagagagtggagatgataacggtgtatacgacctattcgagcttgtgaaagtgaacaag aggcaccaaggagttaccttggtgaaaggcgcagatccctacagcccagcctataaggtc ttgaacgcagacctgatccccccggttcccgagatctccttcagggacctcattgattca atacaagctgaaagaggattccttctcctcgtcaacttcaagcagttcaagaaaaccagg ggtagtattttgactgtggagaagaatgacggatcaggaccgatattcgaaatcatttct aatggcaaggcgcaaactctggatgtggtatactccaccgggaacaagcaacaggtagtg tccatagaagatgcagatctagcgacaggacattggaagaatatcacgctgttcattcag gaagatcgtgcccagctgttcgtaggatgtgaagagatcaatatatccgaaatagacgtg cccatccaaaaggtcctgacgcatgaggttgctgacattgcccgtctgagaattggaaaa ggagctgtgaaagacagatttatgggagtgcttcagaacgtgcgcttcgtttttggaacc actttggaggcaatcatgcgcaataagggatgccaaagctctgaaacattggctgatgtc atgaccctggacaacccagtcaatgggtctagcccagcaataaggactgattacactggc cacaaaagcaaagaaattcagcaggtctgtggcttttcctgtgaggatatcaccagcatg ttcaaggagctcaagggactcggtgtggttgttaagcagctgtcaaacgagctcaacaga gtgaataaggagagcactctgctcatgaatcagatgagaatccacagtggggtctgtctt cataacggcatcgtgcacaaggacaaagatgagtggaccgtggacggctgcacagagtgt acctgccagaactctgccactgtgtgtcgcaaaatctcttgtcccctgatgccttgtgcc aacgccaccgtgcccgatggagagtgctgcccacgttgtggaaccccgagtgactatgct gaggatggctggtccccctggtctgaatggactcattgttctgtgtcttgtggacgggga atccagcagcgaggtcgatcatgcgatcgcatcaacagcaactgcgagggcacctctgtg cagacccgcgactgctaccctcaggaatgtgacaagcgcttcaagcaggatggtggctgg agccactggtctccctggtcctcctgctctgtgacctgtggtgaaggagtcatcacccgc attcgcctttgcaactccccaactccccagatgggaggcagagactgccaaggacagggc agagagacagaggtctgccagaaatcaccatgtccaattgatggagtctggggaccctgg tctttatgggacacctgctctgtcacctgtggaggtggattccagactcgccagcgtctt tgtaacaaccccacccccaaatacggaggaaaggaatgtcagggcgacggcaaaacatcc caactgtgtggaaaagaggactgccctattgatggctgtctgtccaacccctgctttgct ggcgctaagtgtaccagctttgatgatggttcctggaagtgtggcgcatgcccagtgggc tacaccggagacggcatcaactgcaaagacatcgatgagtgcaaggaggtccatgacgca tgcttcacactcaatggagtccaccgctgtgagaacactgagcctggttacaactgcctt gcctgcccccctcgctactcaggacaacagcccttcgggagaggagtggagcaggccaca gccaagaaacaggtgtgcacaccccgtaacccctgccaagacggcagccatgattgcaac aagaatgccaactgtatctacctgggtcagttcagcgacactatgttccgctgtgagtgc aaaccaggttacgctggcaacggccacatctgtggagatgacactgacctggatggatgg cccaacaaagacctcctgtgtgtggagaatgccacctaccactgcaagaaggacaactgt ccaaaccttcccaactctggacaggaggatcacgacaaagatgggcttggtgacgcttgc gatcacgatgatgacaacgatgggatccctgatgatagggacaactgcccaatggtctac aaccccgctcagtatgatgtggacagagatgacgttggtgatcgatgtgataactgtgtg catgagagcaaccccgaccaagtcgacacagacaacaacggagagggggatgcctgtgct attgacattgacggtgatggcattctaaatgagagggacaactgcccatacgtctacaat gtggaccagagagacactgacggggatggagtgggagaccactgcgacaattgccctctt gaaaacaacccagaccagattgactctgactcagaccgtgtgggagacaagtgcgacaac aaccaggacattgatgaggacggtcatcagaacaacttggacaactgtccctatatcccc aatgccaaccaggccgaccacgacaaagacggcaagggtgacgcctgtgaccacgatgat gacaacgacggtatccctgacgacaaggacaactgtaggctggcctttaaccctgaccag ctggactctgatggtgatggtcgtggagatgtttgcaaagatgactttgaccaagacaac attcttgatatctacgatgtgtgccctgaaaactttgccatcagtgagacggacttccgc aggttccagatggtaccactagaccccaagggaacctcccagatcgaccccaactgggtg gtccgtcaccagggcaaagaactggtgcagaccgtcaactgtgaccctggcatcgctgtt gggttcgatgagttcaacgcagtggacttcagtggaacattctttatcaacacagacagg gacgatgactatgctggatttgtgtttgggtaccagtccagctccaggttctacgtggta atgtggaagcagatcacacagacctactggtcccacacgccgaccagagctcagggctac tccggagtgtccatcaaagtggtcaactccaccacaggacctggggagcatctgaggaac gccctctggcacaccggtgacactgctggacaggtgcgtactctgtggcacgaccccaag aacatcggctggaaagactacactgcctacagatggcacctgatccacaggcccaagtct ggactcatcagagttgtgatgtatgaaggcaagagaatcatggccgattccggaaatatc tacgacaagacctatgctggtggaagactaggcatgtatgtcttctctcaggagatgaca tacttctcagacctcaaatatgaatgcaaagattcttaa

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