Oncorhynchus nerka (sockeye salmon): 115146859
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Entry
115146859 CDS
T07952
Name
(RefSeq) LOW QUALITY PROTEIN: telomerase-binding protein EST1A-like
KO
K11124
protein SMG6 [EC:3.1.-.-]
Organism
one
Oncorhynchus nerka (sockeye salmon)
Pathway
one03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
one00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
115146859
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
one03019
]
115146859
03032 DNA replication proteins [BR:
one03032
]
115146859
Messenger RNA biogenesis [BR:
one03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Other surveillance factors
115146859
mRNA cycle factors
Common to processing body (P body) and stress granule
115146859
DNA replication proteins [BR:
one03032
]
Eukaryotic type
DNA Replication Termination Factors
Telomerase complex (animals)
115146859
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EST1_DNA_bind
PIN_4
EST1
bZIP_Maf
Motif
Other DBs
NCBI-GeneID:
115146859
NCBI-ProteinID:
XP_029544737
LinkDB
All DBs
Position
LG19:complement(31628392..31663065)
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AA seq
987 aa
AA seq
DB search
MYLQTGVGYGALHFLDTDDEAAGSPPVLQGQHFHLQQQAAARAQAFYKYQNSDNPYNANP
NPNTRYPYPYHTMPAGPYQIPPSNDMYHPGQFYGGYRGQGYLDGPEAVAGGGSGAGVTPE
EAGQHARGELGRLLRAADSQELQLTNLLSRDRLSADGLDRMAQLRADLLTLYERVILTDI
EFSDSQNLDQALWKNVFYQVIERFRQLLKDPSGDSAPRITTMLLTLLDEGAVFFDALLQK
LQMVFQFKLEDYMDGMAIRPRPLRKTVRYALISAQRCLICQGDIARYREQASDSANYGKA
RSWYLKAQQIAPKNGRPYNQLALLAVYTKRKLDAVYYYMRSLAASNPILTAKESLMSLFE
EAKRKADQMGRRQESEGGSRGPGVQGGGRGRGEPGARVEIWLRPVVQAGALSSHRGGSES
SRDSEQDGELGNLSASDLNKRFILSFLHAHGKLFTKVGMESFPEVVSRVLQEFRVLIQHS
PSPLGSTRMLQIITINMFTIHNAQSRGGDGEVRSVLQEQTTALGLAMFSLLVQRCTELLR
DTPAESIPEEEREDGDEWEEGMVRVSAFPLDLRELLPSVKVWSDWMLGHPDQWNPPPCSI
DGCSSGVWRSWPTCVMRWLVSTTGKRRCTRQTGTEARGEELRLLLLEEDRLLAGFVPLLA
APQEPCYIELTRDTAIAADCKRVTVLKYFLEALCGQEQPLLAFKGGKYVSMATSPQPSSP
GDAHSRHDSLTERESDDVIVEAESSVSEGDEGGGSEDDIRELRARRSALTNRLAQQQRRR
DKIQAVLQTCGQLELEVRPLFLVPDTNGFIDHLTGLKTLLQSGTYILVVPLIVITELDGL
AKGQESCGGSGGGHGGGGSRGNPGATHARAVQEKAKVAVAFLERGFEAREPCLRALTSRG
SQLESIAFRSEDTSGQQGNNDDVILSCCLHYCKDKAKDFMPAKRDGPVRLRREVVLLTDD
RNLRVKALTRNVPVRDIPAFLTWAKVG
NT seq
2964 nt
NT seq
+upstream
nt +downstream
nt
atgtacctgcagacaggcgttggttacggagcgctgcacttcctggatacagatgacgag
gctgcagggagtcccccggtcctccaggggcagcacttccacctccagcagcaggctgca
gccagggcccaggccttctacaagtaccagaactctgacaacccttacaacgccaaccct
aaccccaacacacgctacccctacccttaccacactatgcccgccggcccttaccagatc
cccccctctaacgacatgtaccacccgggtcagttctacggggggtacaggggccagggg
tacctggatggacccgaggctgtagcagggggtggatccggagcgggtgtaacccctgag
gaggctgggcaacatgccagaggagagctggggagactgctgagagctgcagacagtcag
gagttacagctcaccaacctgttgtctcgagacagactcagtgctgatggactggaccgc
atggctcagctcagagctgacctgttgaccctgtacgagcgtgtgatcctaacagacata
gagttcagtgacagccagaacctggaccaggctctatggaagaacgtgttctaccaggtt
atagagcgcttcagacagctcctcaaagaccccagtggagactcagctccgcgcatcacc
accatgctactgacactgctggacgagggggcagtattctttgatgcgctgctgcagaag
cttcagatggtgtttcagtttaagctggaggattacatggacggcatggccatcagacca
cgaccactacgcaaaacggtgaggtatgctctgatcagtgctcagcggtgtttgatctgt
cagggggacatcgcccgttaccgggagcaggccagcgactcggctaactacggcaaggct
cgcagttggtacctgaaggcccagcagattgctcctaagaacggacgaccctacaaccag
ctggccctcctggctgtctacacgaagaggaagttggatgcagtgtattattacatgcgt
agcctggcggcctccaatccaatcctcactgccaaggagagcctcatgagtctgtttgaa
gaggccaaacgcaaggcagaccagatggggcggaggcaggagtcagaagggggttccagg
ggcccgggggtccagggtggaggaagaggacggggggagccgggggccagagtagagatc
tggcttcgccctgtcgtccaggcaggggctctctcatcgcaccgcgggggcagcgagtcc
agcagagactctgaacaggacggagagctcggcaacctcagcgctagtgatctcaataag
aggttcatactcagcttcctccacgctcatggaaaactcttcactaaagtgggcatggag
tcgttcccagaggtggtcagtcgtgttctccaggagttcagagtgctgatccaacacagc
ccctcccccctgggcagcacacgcatgttacagatcatcaccatcaacatgttcactata
cacaacgctcagagcagaggaggagatggtgaggtgaggtctgttttacaggagcagact
acagctctgggtttggccatgttctctctgctggtccagcgctgcacagaactactgaga
gacacacctgcagagtccatccccgaggaggagagagaagatggggatgagtgggaggag
gggatggtgagagtttctgccttcccattggacctgagggagctgctgcccagcgttaaa
gtctggtctgattggatgcttggacaccccgaccaatggaatcctccgccttgtagtata
gatggttgtagctctggtgtgtggcgtagctggccgacctgtgtaatgcgttggctcgtg
tcgaccacggggaagcgccgctgtacaaggcagacggggacggaggcgaggggggaggag
ctccgcctgctgctattggaggaagacaggctactggccggcttcgtcccgctgctcgcc
gccccacaggaaccctgctacatagaactcaccagggataccgcaatagcagcagactgt
aaaagggtaacagtgttgaagtatttcctggaggctctgtgtggacaggaacaacctctt
ctggccttcaagggagggaagtatgtctccatggcaacctctccccaacccagcagccct
ggcgacgctcacagtcgacacgactcactgaccgagagagagagcgatgacgtcatcgtg
gaggcggagtcgtctgtttccgagggggatgagggcgggggcagcgaagatgacatcaga
gagctccgggccagacgcagcgccctcactaacagactggctcagcagcaacgacgcagg
gacaagatacaggcggtgttacagacgtgtggtcagttggagttagaggtacgtcctctt
ttcctggttccagacaccaatggcttcatcgaccacctgaccggcctcaagacgctactg
cagtctgggacttacatactggtggtgcccctcatagtgataacagagttggatggtctg
gcgaagggtcaggagagctgcggaggatctggcggtggtcatggcggcggtggttcccgt
ggtaaccctggcgcaactcatgcgcgggcggtccaggagaaggccaaggttgccgtggcg
tttctggagcgagggtttgaggccagagagccctgtctcagagcgctgaccagcagagga
agtcaactggagtctatcgccttccgcagtgaagacacctccggacaacaggggaacaat
gatgatgtaatcttgtcctgctgtctccactactgcaaagacaaggctaaggacttcatg
cctgcaaagagagacggtccggtgcggttgcgtcgggaggtggttcttctgacagatgac
cgtaacctgcgggtcaaagccctgaccaggaatgtgccggtcagagacatccccgcattc
ctcacctgggccaaagtgggctga
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