Oreochromis niloticus (Nile tilapia): 100533981 Help Entry 100533981         CDS       T06104                                  Symbol thbs1b Name (RefSeq) thrombospondin-1 precursor   KO K16857   thrombospondin 1 Organism onl  Oreochromis niloticus (Nile tilapia) Pathway onl04115   p53 signaling pathway onl04145   Phagosome onl04148   Efferocytosis onl04350   TGF-beta signaling pathway onl04510   Focal adhesion onl04512   ECM-receptor interaction onl04820   Cytoskeleton in muscle cells Brite KEGG Orthology (KO) [BR:onl00001]  09130 Environmental Information Processing   09132 Signal transduction    04350 TGF-beta signaling pathway     100533981 (thbs1b)   09133 Signaling molecules and interaction    04512 ECM-receptor interaction     100533981 (thbs1b)  09140 Cellular Processes   09141 Transport and catabolism    04145 Phagosome     100533981 (thbs1b)    04148 Efferocytosis     100533981 (thbs1b)   09143 Cell growth and death    04115 p53 signaling pathway     100533981 (thbs1b)   09144 Cellular community - eukaryotes    04510 Focal adhesion     100533981 (thbs1b)   09142 Cell motility    04820 Cytoskeleton in muscle cells     100533981 (thbs1b)  09180 Brite Hierarchies   09182 Protein families: genetic information processing    04131 Membrane trafficking [BR:onl04131]     100533981 (thbs1b)   09183 Protein families: signaling and cellular processes    00536 Glycosaminoglycan binding proteins [BR:onl00536]     100533981 (thbs1b) Membrane trafficking [BR:onl04131]  Endocytosis   Phagocytosis    Opsonins     100533981 (thbs1b) Glycosaminoglycan binding proteins [BR:onl00536]  Heparan sulfate / Heparin   Extracellular matrix molecules    100533981 (thbs1b) BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  TSP_C TSP_3 TSP_1 TSP1_spondin VWC TSP1_CFP_C EGF_3 TSP1_ADAMTS Laminin_G_3 cEGF EGF TSP1_CCN Laminin_G_2 DUF859 Laminin_G_1 Motif Other DBs NCBI-GeneID:  100533981 NCBI-ProteinID:  NP_001266664 Ensembl:  ENSONIG00000005747 UniProt:  C5HIF3 LinkDB All DBs Position LG15:complement(16187046..16197542) Genome browser AA seq 1168 aa AA seqDB search MKLPGIFLLLMLWTCEAARVAKSRDDNSVYDLFELVKVPSKNHGVTLVKGDDPYSPAYKI LNPDLIPPVPENSFRDLIDSIHAERGFLLLLNFKQFRRTRGSLLTVEKKDGSGPVFEIVS NGKANTLDIVFSTENKQQVVSIEDVGLATGQWKNITLFVQEDWAKLYVGCDEVNTAELDA PIQSILTQETPASAQLRVGKGAVKDKFTGVLQNVRFVFGTTLEAILRNKGCQSAMTDTMV LRNLNGSSAIRTEYSGHKTKDLQMVCGFSCEDLLSMFKELKGLGVVVKELSTELRKLTDE NKLIKSRIGIHSGVCIHNGIVRKNRDEWTVDDCTECTCQNSATVCRKISCPLIPCANATV PDGECCPRCGTPSDYAEDGWSPWSEWTHCSVSCGRGIQQRGRSCDRINNNCEGTSVQTRD CYLQECDKRFKQDGSWSHWSPWSSCSVTCGAGVITRIRLCNSPTPQLGGKDCVGEGRQTE TCTKSPCPINGNWGPWSPWDSCSLTCGGGQQTRKRLCNNPAPQYGGKECVGEAKDIQRCN KTPCPIDGCLSNPCFAGAKCTSFPDGSWKCGKCPAGYTGNGIKCKDIDECKEVPDACFEF NGVHRCENTVPGYNCLPCPPRYSGPQPFGHGVEQAAANKQVCSPRNPCLDGSHDCNKNAR CNYLGHFADPMFRCECKPGYAGNGHICGEDTDLDGWPNSDLVCVENATYHCKKDNCPNLP NSGQEDYDKDGIGDACDNDDDNDGIPDDRDNCPFVYNPRQYDYDRDDVGDGCDNCPYSSN PDQTDTDNNGEGDACAVDIDGDGILNEKDNCPYVYNVDQRDTDLDGVGDMCDNCPLEHNP DQLDSDDDRVGDKCDSNQDIDEDGHQNNLDNCPYIPNANQADHDKDGKGDACDHDDDNDG IPDDKDNCRLAFNPDQLDSDGDGRGDACKDDFDQDNVPDIYDVCPENFDISETDFRKFQM VPLDPKGTSQIDPNWVVRHQGKELVQTVNCDPGIAVGYHEFNAVDFSGTFFINTDRDDDY AGFVFGYQSSSRFYVVMWKQITQTYWSHKPTKAQGYSGLSIKVVNSTTGPGEHLRNALWH TGNTPGQVRTLWHDPKNIGWKDFTAYRWHLIHRPRTGHIRVVMYEGKKIMADSGSIYDKT YAGGRLGLFVFSQEMVYFSDLKYECRDA NT seq 3507 nt NT seq  +upstreamnt  +downstreamnt atgaagctgccggggatatttttgttattgatgctttggacctgcgaggctgcgagagtc gcaaagagtcgagacgacaatagcgtgtatgacttgtttgagctcgtcaaagtccccagc aagaaccacggggtgaccctggtgaaaggagacgacccgtacagccccgcctacaagatc ctcaacccggacctgatccccccggtccccgagaactcctttagggacctgatcgattcc atacatgccgagcggggtttcctcctactgctcaactttaagcagttcagacgcaccagg ggaagcctcctgactgtggagaagaaggatggatccggacccgtgtttgagatcgtctca aacggcaaagcgaacaccttggacattgttttctccaccgagaacaagcagcaggtggtt tccatcgaagatgtgggtctggctacgggtcagtggaagaatatcacgctgttcgtgcag gaggactgggcaaagctgtacgtgggatgcgatgaggtgaacaccgccgaactggatgcg ccaattcagagcatcctgacgcaggagactccggccagcgcgcagcttagggttggcaag ggagccgtgaaggacaagttcacgggggtcctacaaaacgtgcggtttgtgtttggaacg actctggaagcgattctacgcaacaaaggatgccaaagcgccatgactgacaccatggtc ctgaggaacctcaatggctcctcagccatcagaactgagtacagtggccataagactaaa gacctgcagatggtgtgtggcttctcctgcgaggacctgctcagtatgtttaaagagctg aagggtcttggtgtggtagtcaaggagctgtccactgaactccgcaagctgacggatgaa aacaagctgattaaatcccgcattggaattcacagtggtgtctgtatccacaatggcatc gttcgcaagaacagagacgagtggaccgtggatgactgcaccgagtgcacttgtcagaac tctgctactgtgtgtcgcaagatctcctgccccctgatcccctgtgctaatgctactgtt cccgatggagagtgctgcccacgctgtggaacaccgagcgactatgcagaggacggctgg tcgccgtggtctgaatggacccattgttccgtgtcatgtgggcgtggcatccagcagcgt gggcgctcttgcgaccgtatcaataacaactgtgagggcacctctgtgcaaacccgagac tgttacctccaggagtgtgacaagcgcttcaagcaggacggcagctggagccactggtca ccatggtcatcgtgctcggtcacctgtggtgctggtgtcatcacccgaatccgcctctgc aactccccaactcctcagctaggaggcaaggactgtgttggagaaggccggcaaactgaa acgtgtacaaagtccccgtgtcccatcaatggcaactggggtccctggtctccctgggat tcatgcagtctcacctgcggaggtggtcaacagacccggaaacgcctgtgcaataatcct gcaccacagtatggcggtaaagagtgtgtcggtgaagccaaggacatccagaggtgcaac aagaccccctgcccaatcgatggatgtctgtccaacccttgctttgctggtgccaagtgc acaagttttcccgatggttcctggaagtgtgggaagtgcccagcaggatacactggcaat gggatcaagtgtaaagatatcgatgagtgcaaagaggttcctgatgcatgctttgagttt aatggggtgcaccgctgcgagaacaccgttccaggctataactgtttgccctgcccacct cgttactcaggaccccagccgtttggccatggtgtggagcaggctgctgctaataagcag gtatgctcaccccgtaatccctgccttgatggaagccatgactgtaacaaaaacgcccgc tgtaactatcttggacactttgctgaccccatgttccgatgtgagtgcaaacctggttat gctggcaatggccatatctgcggagaggacacagatctggatggatggcccaattcagat ttggtgtgtgtggaaaacgccacctaccactgcaaaaaagacaactgtcccaacctcccg aactcagggcaagaagattatgataaggatggcattggagatgcttgtgacaatgatgat gacaacgatggtattcctgatgatcgggacaactgtcctttcgtgtacaatcccaggcag tatgactatgaccgtgatgatgtgggtgacggctgcgacaactgcccctacagtagcaac ccagaccagacagacaccgacaacaacggagagggagatgcctgtgcagtggacattgat ggagatggcatactgaatgagaaggacaactgtccctatgtgtacaatgttgaccagaga gacacagatctggatggagtgggagacatgtgtgataactgcccactagaacataatcct gatcagttggattcagatgatgaccgcgtgggagacaagtgcgacagcaatcaggacatt gatgaggatggacaccagaacaacctggacaactgcccgtatattcccaacgccaaccag gctgaccatgacaaggatggcaaaggtgacgcctgtgaccatgatgacgacaacgatggc atccctgatgataaagacaactgcaggctggcgttcaatcctgatcagctggactctgat ggtgatggccgtggagatgcttgcaaagatgactttgatcaggacaatgtgcctgacatc tatgacgtgtgtcccgagaactttgacatcagtgagacagacttccgcaagttccagatg gttcctttggatccaaaaggcacctcccagattgatcctaactgggttgtccgccaccag ggcaaagagctggttcaaactgttaactgtgaccctggcattgctgttggctaccatgag ttcaatgcagtggacttcagtgggactttcttcatcaacactgacagggatgatgactat gccggctttgtgtttggctaccagtccagttccaggttctatgtggtgatgtggaagcaa atcacacagacctactggtcacataagccaactaaggcgcaaggttactctggcctgtct atcaaagtggttaattccaccaccggcccaggagagcacctcagaaatgccctctggcac acaggcaacaccccaggacaggttcgcactctctggcatgacccaaagaacattggatgg aaagacttcactgcctacagatggcatctgatccacagaccgagaacaggacacattcga gttgtcatgtatgagggtaagaagatcatggctgattctggtagcatctatgacaagaca tatgcaggtggcaggctaggtctttttgtcttttcacaagagatggtatacttctcagac ctcaagtatgaatgcagagatgcataa

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