Oreochromis niloticus (Nile tilapia): 100701636
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Entry
100701636 CDS
T06104
Symbol
apaf1
Name
(RefSeq) apoptotic protease-activating factor 1
KO
K02084
apoptotic protease-activating factor
Organism
onl
Oreochromis niloticus (Nile tilapia)
Pathway
onl04115
p53 signaling pathway
onl04210
Apoptosis
onl05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
onl00001
]
09140 Cellular Processes
09143 Cell growth and death
04210 Apoptosis
100701636 (apaf1)
04115 p53 signaling pathway
100701636 (apaf1)
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
100701636 (apaf1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Beta-prop_WDR5
Beta-prop_WDR3_1st
Beta-prop_IFT122_1st
Beta-prop_THOC3
WD40
WD40_Prp19
WD40_WDHD1_1st
Beta-prop_EML_2
WD40_CDC20-Fz
Beta-prop_WDR3_2nd
APAF1_C
WDR55
Beta-prop_TEP1_2nd
EIF3I
WD40_MABP1-WDR62_2nd
Beta-prop_WDR36-Utp21_2nd
Beta-prop_WDR36-Utp21_1st
WD40_Gbeta
Beta-prop_CAF1B_HIR1
WHD_APAF1
Beta-prop_WDR90_POC16_2nd
ANAPC4_WD40
Beta-prop_EML
NB-ARC
WDR90_beta-prop_4th
CFAP251_N
Beta-prop_WDR41
CARD
NBCH_WD40
Beta-prop_WDR75_1st
Beta-prop_Aladin
Beta-prop_RIG_2nd
Beta-prop_NOL10_N
DSE1_N
Beta-prop_WDR19_1st
Beta-prop_IFT140_1st
Beta-prop_HPS5
Beta-prop_TEP1_C
PEP5_VPS11_N
RMC1_N
ASA1
Beta-prop_VPS8
Beta-prop_WDR35_TULP_N
eIF2A
Beta-prop_Vps41
Beta-prop_NUP159_NUP214
Beta-prop_NWD2_C
Beta-prop_ACSF4
Beta-prop_WDR75_2nd
Ge1_WD40
PAC11
CARD_2
TRM82_WD
VPS11_N
Beta-prop_WDR11_2nd
WDR54
AAA_22
NACHT
Beta-prop_pof12
WHD_Dark
AAA_16
Motif
Other DBs
NCBI-GeneID:
100701636
NCBI-ProteinID:
XP_003445026
Ensembl:
ENSONIG00000011426
LinkDB
All DBs
Position
LG17:13505750..13553800
Genome browser
AA seq
1258 aa
AA seq
DB search
MALEEGARSCLLRFRLKLEEDIKPTYLMDHMISDGVMTVDEEERIRTQPTRKDQAGALIE
LLLRKDNLTYISFYNALVKEAYDDLASLLHRDLPHISLNPHKGSSDGSATDVQSRLSEGG
IPQRPVVFVNRPELVNRAREKLYRLQKDPGWITVFGMAGSGKSVLAAEAVRDHGIIEDCF
PGGVHWLSIGQVDKPDLLVKVQSLCFRLEQSLDSQLLHRPPNSLDEAKERLRFLMLRRYP
RSLLILDDIWDSTVLKVFDIHCRVLLTTRNRSLTDSVSGAKHEVEVESGLDENKALEILA
LYTRIKLQALPEEARSIVKECKGSPLVVSLIGALLREKPNRWRYYLRQLQMKQFKRIRKS
SSYDYDALDQAMAASIEVLPDEHRDLYKDLTVLQKDVKIPAKVLSVLWDLEPEEVEDILE
EFVNKSLLFMDNNSKPYLYYLHDLQIDFLLEQNRTQLESLHTKVVRQYQQHYRDGPPTSG
DKESLYWIQYLTYHMAKANLTQELYSLMFSLNWVITKAKIMGPAHLINDYVEYGFILDQE
NSEVRSQFQEFLSLNGHQLEQRPFPDVVQLALSQPPNSEVYKQARVQAQNRTKAGKLYFD
LVNKSGVDNLSRLVIHPHQGSIYSACFSQDGTKIASCGASKTLKVFKSTSGEKLMEIPAH
DDEVLCCAFSPDGRLLATCSSDRKVKVWNGERAMLLRTFEEEHEEQVNHCQFTNTSGRLL
LATCSNDNIQNVKLWNLNKPSSQNTMFGHFEPVNHCCFSPDDKYLSTSSNDGTLKVFEVS
SANEWKTIYVSDIFTDNKEDVFVKCSTWTADGKRIICAARNAVLVFDVETSDMLFEIRTS
RMSTVQYCHACPTSNLLAIAFSNYAVELWDLEANKKMADCSGHLSWVQRVQFSLDGSQLL
SCSDDQTIRIWETKKVHTSSAIRLKRDSDVLFNHEEIIVSAADNCNRLQVRDGRTGSVLF
QSEEKSSRIRCTCICQQPSAVVLGQEDGTVQVLEVPSGKLLATLQGHTKTVLHCQFSQNG
QTLITSSEDATIRVWEWQSGKCKVLHGHKEQVRCFSLLSNSPNDSRLLSWSFDGTVKVWD
TESGEKLQDIEAHHGTILSCHVSPDGCFFATTSTDKTAKLWHCESWQCAYTLIGHKECVR
SCRFSWDSQHLATGDDNGEIRLWSVKDGSLLKVCSQESKDGMDSLHGGWVTDLHFSPDNS
LLVSTGGYIKWWEVKTGKALQTFYTTGSALKKIHVSSDFSTFVTIDNIGILYILQRVV
NT seq
3777 nt
NT seq
+upstream
nt +downstream
nt
atggcactcgaggaaggggcacggagctgtctgctgcgcttccgcctaaaactggaggag
gacattaagcccacctacctgatggatcacatgatcagtgatggtgtgatgactgtggat
gaggaggagaggatcaggactcagcctaccaggaaggatcaggctggagcactgatagag
ctcttgttgagaaaggacaaccttacctacatttctttctacaatgcactggtcaaagag
gcatatgacgatttggccagtttgctccatagggacctgccgcacatctcattgaatcca
cataagggctcttctgacggctctgcaactgatgttcagtcaagacttagtgaaggcggc
atcccacagaggcccgtagtgtttgtcaacagaccagagctagtgaaccgggccagggag
aagctttaccggctccagaaggaccccggctggatcactgtctttggcatggctggctcg
gggaagtctgtcctagctgctgaagctgttagagatcatggaatcattgaagattgcttt
cctggaggtgtccactggctgtccatcggccaggtggacaagccagacctgctggttaaa
gttcagtcattgtgttttcgtctggagcagagccttgattcccagctcctccaccgtccc
ccaaactctctggatgaagccaaggagcgtctacgcttcctcatgctgcgtagatatcca
agatctctgctgattttggatgacatctgggatagtacagtgttgaaggtgtttgacatc
cactgtcgtgttcttctcaccaccagaaatagaagcctcaccgattctgttagcggtgct
aagcatgaggtggaagtggaaagcggtttggatgaaaacaaggccttggagatccttgct
ctgtacactagaataaaactgcaagcactacctgaggaggctcgcagcattgtcaaagag
tgtaaaggctcccctttggtggtgtctctgatcggagcgctgctcagagaaaaaccaaac
cgctggcgttactatctccgccagctgcagatgaagcagttcaagcgtataaggaagtcg
tcatcttatgactatgatgccctggatcaggccatggctgctagcatcgaggtacttcct
gatgagcaccgagacctctacaaggatcttactgttctacagaaggatgtcaaaatccct
gctaaggtgctgtctgttctttgggatctggaacctgaggaggtggaggacatcctggag
gaatttgttaacaagtctctgcttttcatggacaataacagtaaaccctacctatactac
cttcacgacctccagatagacttcctgttggagcagaaccgaacgcagcttgagagcctt
cacactaaggtggtgcgtcagtaccagcagcattacagagatggtccccccacttcagga
gacaaggaatctctttactggatccaatatttgacctaccatatggccaaagccaacctt
acccaggagctctactccctcatgttctctctcaactgggtgatcaccaaggccaagata
atgggtccagctcatctcatcaatgactatgtggagtatggattcattctggaccaagag
aacagtgaagtgcgcagtcagttccaggagtttctgtctctgaacggccaccagcttgag
cagcgtcctttccctgatgttgtgcagcttgctctgtctcagccgcccaactctgaggtc
tacaaacaagctcgagtgcaggcacagaaccggaccaaagctgggaaactctactttgac
ttggtgaataagagtggtgtagacaatctgtctcgtttggtgattcacccccaccagggc
tccatttactctgcctgcttctcgcaggatggaaccaaaattgcttcttgtggagctagc
aagacactcaaggtgtttaaaagtacctcaggtgagaagctcatggagatccctgcccat
gatgatgaagtgctttgctgtgccttctcccctgacggccgtctcttggcaacctgctct
agtgacagaaaagtcaaggtgtggaatggagagcgagcaatgctgcttaggacgtttgaa
gaggagcacgaagagcaggtcaaccactgccagtttactaacacatcagggcgcctcctt
ttggccacctgctccaatgacaatattcagaacgtcaagctgtggaacctcaataagcca
tcctcccagaacaccatgtttggtcactttgagccagtcaaccactgctgtttctctcct
gatgacaagtatctgtcaacttcctccaacgatggtacccttaaggtatttgaggtttct
tctgccaatgaatggaagacgatctatgtaagtgacatttttacagacaacaaggaagac
gtctttgtcaagtgtagcacctggactgctgatggcaaacgcatcatatgtgctgccaga
aatgctgttttggtctttgatgtagagacatcagacatgttgtttgaaatcaggaccagt
cgaatgagcacagttcaatactgtcacgcctgccccaccagtaacctgttggccattgcg
ttttcaaactatgctgttgagctgtgggatctcgaggccaataaaaagatggcagactgc
agtggccacctaagctgggtgcagcgtgtccagttttctcttgatggctcacagctgctc
tcctgctctgatgatcagaccatcaggatatgggagaccaagaaggttcacacatcctcg
gccatccgcctgaagagagattctgacgttctgtttaatcatgaggaaatcatagtgtca
gctgcagataattgcaacagactgcaggtgcgtgatggtagaacaggatcggtgctgttc
cagtcagaggagaagtcatccaggatccggtgtacctgtatctgtcagcagccctctgct
gttgtcctggggcaagaagatggcactgtgcaggtgctggaggtgccctctgggaagctt
ctggccactctgcaggggcacactaagactgtgctgcactgtcagttcagtcagaacggc
caaacactcatcacttcctctgaggacgccaccataagagtgtgggagtggcagtcaggc
aagtgtaaagtactgcacggtcataaggagcaagtcagatgcttctctctactctccaac
tcaccaaacgactcaagactgctgtcctggtccttcgatggtactgtgaaggtgtgggac
accgagagcggagagaaactgcaggacatcgaggctcatcacggaaccattctgtcctgt
catgtctcgccagacggatgcttctttgccaccacctctactgacaagactgctaagttg
tggcactgtgagtcctggcagtgtgcctacacattgatcggccataaggagtgtgtgaga
agctgccgattctcgtgggacagccaacaccttgcaacgggagatgacaacggagagatc
cggctctggagtgtcaaggatgggtccttgctgaaggtttgttcccaggagagtaaggat
ggcatggactcgctgcatggaggctgggtaacagatctgcacttctccccagacaactct
cttctggtctcaactggaggttacatcaagtggtgggaagtgaagacaggcaaagctctg
cagaccttctatacaacgggaagcgctttaaagaagatacacgtgtcatccgacttctcc
acctttgtcactatcgacaatatcggcatcctctacatcctccagagggtggtgtga
DBGET
integrated database retrieval system
