Oreochromis niloticus (Nile tilapia): 100710127
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Entry
100710127 CDS
T06104
Symbol
eftud2
Name
(RefSeq) 116 kDa U5 small nuclear ribonucleoprotein component
KO
K12852
116 kDa U5 small nuclear ribonucleoprotein component
Organism
onl
Oreochromis niloticus (Nile tilapia)
Pathway
onl03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
onl00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
100710127 (eftud2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
onl03041
]
100710127 (eftud2)
Spliceosome [BR:
onl03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
100710127 (eftud2)
Complex C
U5 SnRNP specific factors
100710127 (eftud2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
GTP_EFTU
EFTUD2
EFG_C
EFG_IV
GTP_EFTU_D2
EFG_III
EFL1
EF-G_D2
MMR_HSR1
Ras
Motif
Other DBs
NCBI-GeneID:
100710127
NCBI-ProteinID:
XP_003442062
Ensembl:
ENSONIG00000000912
LinkDB
All DBs
Position
LG4:27318044..27332350
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AA seq
971 aa
AA seq
DB search
MEADLYDEFGNYIGPELDSDDDDDDLDAEDRDVDEGDEDDEDEPADADDDVPGMEVVLHE
DKKYYPTAEEVYGPEVETIVQEEDTQPLTEPIIKPVKNKQFTLMEQELPATVYDMEFLAD
LMDGPELIRNVTLCGHLHHGKTCFVDCLIEQTHPEIRKRDDVDLRYTDILFTEQERGVGI
KSTPVTMVLPDSRGKSYLFNIMDTPGHVNFSDEVTSSIRLSDGVVLFIDAAEGVMLNTER
LIKHAVQERMAITICINKVDRLILELKLPPTDAYYKLRHIVDEVNGLLSTYSTDENLVVS
PLLGNVCFASSQYSICFTLGSFAKIYSDTYGDINYNEFAKRLWGDIYFNPKTRKFTKKAP
SSNSQRSFVEFVLEPLYKILSQVVGDVDTSLPRVLDELGIHLTKEELKLNIRPLLRLVCN
RFFGEFTGFVDMCVQHIPSPQEGARNKIEHTYTGGLDSDLGEVMAECDPDGPLMCHTTKM
YSTEDGVQFHAFGRVLSGTIQAGQPVKVLGENYTLEDEEDSQVCTVGRLWISVARYQIEV
NRVPAGNWVLIEGCDQPIVKTATITEPRGNEEAQIFRPLKFNTASVIKIAVEPVNPSELP
KMLDGLRKVNKSYPSLTTKVEESGEHVILGTGELYLDCVMHDLRKMYSEIDIKVADPVVT
FCETVVETSSLKCFAETPNKKNKITMIAEPLEKGLAEDIENEVVQISWNRKKLGEFFQTK
YDWDLLAARSIWAFGPDTTGPNILVDDTLPSEVDKALLGSVKDSIVQGFQWGTREGPLCD
EPIRNVKFKILDAVIAQEPLHRGGGQVIPTARRVVYSAFLMATPRLMEPYYFVEVQAPAD
CVSAVYTVLARRRGHVTQDAPIPGSPLYTIKAFIPAIDSFGFETDLRTHTQGQAFALSVF
HHWQIVPGDPLDKSIVIRPLEPQPAPHLAREFMIKTRRRKGLSEDVSISKFFDDPMLLEL
AKQDVVLNYPM
NT seq
2916 nt
NT seq
+upstream
nt +downstream
nt
atggaggctgatttgtatgacgagtttgggaactacatcggtccagagctggactctgac
gacgatgatgatgacctggatgcagaggacagagacgtcgacgagggtgatgaagatgac
gaggatgagccagcggatgctgatgatgatgtccctggcatggaggtggtcctgcatgag
gacaagaagtactatcctacagcagaggaggtctatgggcctgaagtggaaactattgta
caggaggaagatacacaaccacttacagagccgatcatcaagcctgtgaagaacaagcag
ttcaccctgatggaacaggagttgcctgccacagtttacgatatggaatttcttgcagat
ctgatggacggaccagagctgattcgtaacgtcaccctctgcggtcaccttcaccacggc
aagacctgttttgtggattgcctgattgagcagacacacccagaaatcaggaagagagat
gatgtggatctccgatacacagacatcctctttaccgaacaagagagaggagttggcatc
aaaagtacccctgtcacaatggtcctgcctgactccagaggaaaatcctaccttttcaat
ataatggatacaccaggccacgtgaatttctctgatgaggtcacatctagcatccgcctc
tcagatggcgttgtcctcttcatagatgcagcagaaggagtgatgctgaacacagagcgt
ctcatcaagcatgcggttcaggagcgaatggcaatcaccatctgcatcaacaaggttgat
cgtctcattctggagctcaaactgccgcccacagatgcttattataaacttcgccacatt
gtagatgaggtcaatggtttgctgagcacatattccacagatgagaacttggtggtgtct
cctctccttggaaatgtctgcttcgccagctctcagtacagcatctgtttcaccctgggg
tcctttgcaaagatctactcagatacctatggtgacatcaactataatgagtttgccaag
aggctctggggagatatttatttcaaccccaaaactcgcaagttcacgaaaaaagctccc
agtagtaactcccagcgcagctttgtggaatttgttctggagcctctgtacaagatcctc
tcacaggtggttggggatgtggacacgtctctccctcgagttttggatgagctgggtatc
cacctgactaaggaggagctgaagctgaacattagacccctgctgaggctcgtctgtaat
cgcttctttggagagttcactggttttgtagacatgtgcgtgcaacacattccttcacca
caagagggtgctaggaacaagattgagcacacctacaccggaggtctcgactcagacttg
ggggaagtcatggcagagtgtgatcctgatggtcctctgatgtgccacaccactaagatg
tacagcacagaggatggtgttcagttccatgctttcgggcgggtgctgagcgggaccatt
caggcaggtcagcccgtcaaggtcttgggagagaactacacacttgaagatgaggaggac
tctcaggtctgcactgtggggcgtctctggatttctgtggccaggtatcagattgaagtg
aatcgagtgcccgccggcaactgggttctcattgagggctgtgaccagccgatcgtcaag
accgccacaatcacagagcccagagggaacgaagaggctcagatttttaggccgttgaag
ttcaacacagcatcagtcatcaagatcgcagtggagcctgtgaatccatcagagctgccc
aaaatgctcgacggactaaggaaggtcaacaagagctatccttctctcaccacaaaggtg
gaggagtctggagagcatgtcatcttggggacaggagagctttacttggactgcgtcatg
cacgacttgaggaagatgtactctgaaatcgacattaaagttgccgaccctgttgtgact
ttctgtgaaacagttgtggagacatcgtccctgaagtgctttgctgagacgcctaataaa
aagaataagatcaccatgattgctgagcccttggagaaggggctggccgaggacatcgag
aatgaagtagtgcagatatcttggaacaggaagaagctgggagagtttttccagaccaag
tacgactgggatttgctggctgccagatctatttgggccttcggaccagacactacaggg
ccaaacattcttgtagatgacacactgccttctgaggtggacaaagcactgcttggttca
gtcaaagacagcattgtgcagggcttccagtggggcaccagggaaggacctctgtgtgat
gaacccatcagaaatgtcaagttcaagatcctggacgcagtcatcgctcaggagcctctc
cacagaggaggaggtcaggtcatcccaacagcaaggagagtggtgtactctgctttcctc
atggccactccgaggttgatggagccatattactttgtagaggttcaggctccagctgat
tgtgtgtctgcagtttacacagtgctggctcgaaggaggggtcacgtcacccaggatgca
ccaattccaggctctcctctctacacaattaaggctttcatcccagccattgactcgttt
ggctttgagacagaccttcgcacacacacacagggtcaggcctttgctctgtctgtgttc
caccactggcagattgtgcccggtgaccctctagataagagcattgtgatcaggcctctc
gagcctcagcctgccccccatctagccagagagttcatgatcaagacccgaagacgcaaa
ggtctgagcgaggatgtgagcatcagcaagttcttcgacgaccctatgttgttggagctg
gccaaacaagacgtggtgctcaactatcccatgtga
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