Oreochromis niloticus (Nile tilapia): 102078765
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Entry
102078765 CDS
T06104
Name
(RefSeq) guanine nucleotide exchange protein SMCR8 isoform X1
KO
K23611
guanine nucleotide exchange protein SMCR8
Organism
onl
Oreochromis niloticus (Nile tilapia)
Pathway
onl04140
Autophagy - animal
Brite
KEGG Orthology (KO) [BR:
onl00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
102078765
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
onl04131
]
102078765
Membrane trafficking [BR:
onl04131
]
Autophagy
Other autophagy associated proteins
Rab associated proteins
102078765
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Folliculin
Motif
Other DBs
NCBI-GeneID:
102078765
NCBI-ProteinID:
XP_005460774
Ensembl:
ENSONIG00000003176
UniProt:
I3J540
LinkDB
All DBs
Position
LG6:complement(12584250..12594004)
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AA seq
924 aa
AA seq
DB search
MIGSPDLLAFTGTEGFGEEEDELEAQGLPEELSVPRFPSSHPWSTAAQFHRDFILVAEFS
EQVGPTPVLTIPEDSRVLGSFDLNHFSVRIMSVDYQASGPGHTPPSSPGPRLNFSEDSKV
ILGDSAEDAFAYVHHLTLYDLEARGMVRPFCMAYVCSDQVKLMENFSELSTRFSEAAESL
KTGNRQAFSIELQRKLQELEYRRLTLRKVTEGQTTVNGLTESEGESEELEAVERSILNHR
ELLRQVASYPNRKLKQPDFLPYDPATSLTDPLLLPPFEPCFSFSTPPSISCKSEHHLKPL
EELCNEYYLNLTKERLTDTERRLRGDRSVLRTTYATQSLSRRLMLTNFLFELWSPDDADE
EGTEVELPKDTGNKRSGEAFQPEPPSIESFFSCVEEIPIKLVAEAHTLTPEPGPGTEMTG
SVSSSDSIEVLGTEKSYMTQHVATGVDSRGTPVGVTESCIRRAAVDTGIRRPRAYAKRAD
SEDSIEVLSTTESILPEDLTAITEEEAELQPLSNGFENEEEPQMEDKSHKVLKEEETLNA
PAAVSEDENEGPDDEDQCCVGSEEPLEQTMVTDDIMIKEQPGAIKMSQFHKDNSEEKTSK
LLQADEAVKPSPEAQQKVRLIPQVHVNFAPASYMAEVDRWSSPRPPLRLLSVDEESTLSS
ISFTESSEPPSPTQNIHSSICWDKRRKRKAGLRALRFIKHNSFSQHAVFCLLSGRPLVVI
GGDENLVRKTVDALTLFLPAPGPHRSAVKMCLTTPLQLTDLLTWRLMGVHRSSSASFSTI
LPSLSRYSRYLALLDLDQRTLRCPSYSGSLLSRLANPHTGIIRGITYVQHLESCLAALVN
HVLVHTFIPLFKNLRVTKEKGDTEVDSWCERGLCSERGLCSSECDLRVMSYLSHLIKQRY
TGRGPPVLRFAYSSVQTHRNTITT
NT seq
2775 nt
NT seq
+upstream
nt +downstream
nt
atgatcgggtcaccggacctgctggccttcaccggcacggaaggctttggggaagaggaa
gatgagctggaggctcagggtctacctgaagagctctctgtccctcgtttcccctcttct
cacccctggagcacagcagcacagtttcacagagacttcatactggtggctgagttctca
gagcaggtgggtccaactcctgtgctgacaataccggaggactccagagtcctcgggtca
tttgacctcaaccacttctctgttcgcatcatgtctgtggactaccaagcgtctggcccc
ggccacacccctccatcctcgcccggcccccgactcaacttcagcgaggactccaaagta
atcctgggagattcagcagaggatgcgtttgcatatgttcatcacctgacgctgtacgac
ctggaggctcgggggatggtgcgtcctttctgcatggcctacgtgtgctcggaccaggtg
aagctgatggagaacttttctgagctatcgacacgcttctctgaggcagctgaaagcctc
aagacgggaaacagacaagcattttctattgagctgcagagaaaactacaggagctcgag
tacagacgcctgacccttcgaaaggtcacagaaggtcagacgacggtaaatgggttgaca
gaatctgaaggagaaagtgaagagctcgaagctgtggagcgttcaatcttaaatcacaga
gagctccttcgtcaggtcgcatcctacccaaacaggaagctcaaacagcccgacttcctg
ccctatgacccagccacctctctcacagatccattgctgttgccaccttttgagccatgc
ttctcattctccacccccccctccatctcctgcaagtcagagcaccatctgaagccactg
gaggagctttgcaacgaatactacctgaatcttacgaaggaacgcctcacagacacagag
cgacgtctccgtggtgacagaagtgtcctgcgaactacttatgccacacagtcattgtcc
aggagactaatgctcaccaacttcctgtttgagctatggagcccggacgatgctgatgag
gagggcactgaggtggagctgcccaaggacacggggaataagaggagtggtgaggcgttt
cagccagaaccaccgagcatagagtcattcttctcctgtgtggaggagatcccaatcaaa
ctggtggcagaagcacatacgctgacccccgagcctggtcctggtacagagatgacgggg
agtgtaagcagcagcgacagcatcgaagtgctcggaactgagaagtcgtacatgacgcag
catgtcgctactggagtcgacagcagaggcacaccagtcggagtgacagagagttgcatc
aggcgtgcagcagtagacactggcatcagacgcccgcgagcttatgcaaagcgtgccgac
agcgaggacagcattgaagtgctcagcaccacagaatccatccttcccgaagacctcact
gccatcacagaggaggaagcagagctgcagcctctgagcaacggctttgagaatgaagaa
gaaccacagatggaggataagtctcacaaagtcctcaaagaggaagagacactgaatgca
cctgctgcagtaagcgaggatgaaaatgaggggcctgatgacgaagatcagtgttgcgtt
ggcagcgaagagcctttggagcaaacaatggttactgatgacatcatgatcaaagagcag
ccaggcgccataaagatgagtcagtttcacaaagacaatagtgaagagaagacctccaaa
ctactgcaagctgacgaagcggtgaagccctcacctgaggctcagcagaaggtgcggctg
attcctcaggtccatgtgaactttgcacctgcttcctacatggccgaggtggatcgctgg
tcttccccccgccctcccctgaggctgctgagtgttgatgaggagtcaacgctcagcagc
atcagtttcactgaatcctcagagcccccgtcccccacccaaaatatccacagcagcatc
tgctgggataagaggaggaagagaaaggctggactcagagccctcaggtttatcaagcac
aactcgttctcccagcatgcagtgttctgtctcctgagtggccggccactggttgtcatc
ggaggagatgagaatctagtcaggaagacggtggatgctctgaccctcttcctgcctgct
cctggtcctcatagaagtgctgtgaagatgtgtttgaccacgccccttcagctgactgac
ctgctcacctggagactgatgggagtgcacagatcatcctcggcttctttttccaccatc
cttccttctctgagtcgctacagtcgttatttggctctgctggacctcgaccagaggacg
ctgcggtgcccgtcttactctggttctcttctcagcagactggccaatcctcacactggt
atcatccggggcatcacctacgtgcagcatctggagagctgccttgctgcgctggtcaat
cacgtactggtgcacacatttatacctctttttaaaaatctacgtgtgactaaagagaag
ggtgacaccgaagtggattcctggtgtgaacgaggactctgcagtgaacgaggactctgc
agcagtgaatgtgatttgagagtgatgagctatctgtctcatctcattaaacagcggtat
acgggacgtggaccgccagtgttaagattcgcttacagctcagtgcaaacgcacagaaac
acaattacaacatag
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