Otariodibacter oris: A6A10_02330
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Entry
A6A10_02330 CDS
T06287
Symbol
ligA
Name
(GenBank) DNA ligase (NAD(+)) LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
ooi
Otariodibacter oris
Pathway
ooi03030
DNA replication
ooi03410
Base excision repair
ooi03420
Nucleotide excision repair
ooi03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ooi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
A6A10_02330 (ligA)
03410 Base excision repair
A6A10_02330 (ligA)
03420 Nucleotide excision repair
A6A10_02330 (ligA)
03430 Mismatch repair
A6A10_02330 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ooi03032
]
A6A10_02330 (ligA)
03400 DNA repair and recombination proteins [BR:
ooi03400
]
A6A10_02330 (ligA)
Enzymes [BR:
ooi01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
A6A10_02330 (ligA)
DNA replication proteins [BR:
ooi03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
A6A10_02330 (ligA)
DNA repair and recombination proteins [BR:
ooi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
A6A10_02330 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
A6A10_02330 (ligA)
MMR (mismatch excision repair)
DNA ligase
A6A10_02330 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
A6A10_02330 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
DNA_ligase_ZBD
PTCB-BRCT
HHH
Nlig-Ia
DNA_pol_lambd_f
5_3_exonuc
RTT107_BRCT_5
Beta-TrCP_D
Zn_ribbon_NUD
Motif
Other DBs
NCBI-ProteinID:
QGM80314
LinkDB
All DBs
Position
496522..498546
Genome browser
AA seq
674 aa
AA seq
DB search
MPKLDNVKQKLEEIKTLLRKYEYHYHVLDNPLVTDSEYDRVMNELKNIEWQHPELITNDS
PTQRVGAKPLDGFAQIKHEIPMLSLDNAFSNEELDGFLRRIEDRVIIDSSTIEFCCEPKL
DGLAVSILYVNGVLTQAATRGDGSTGEDITANIRTIRNIPLKLHSDNPPARLEVRGEVFM
PQQGFDALNEKALAKGEKTFANPRNAAAGSLRQLDPKITRQRPLMLNAYGIGIYESDDEL
PHTHFDRLQWLKTLGIPVNNEIILAKGRDELLAFYQSIQEKRSSLGYDIDGTVLKVNDID
LQERLGFISKAPRWAIAYKFPAQEEMTILNSVEFQVGRTGAITPVAKLEPVFVAGVTVSN
ATLHNGDEIERLGVVLGDTVIIRRAGDVIPQITGVVLERRPKNAEKIKFPTACPVCGSAV
VRVDGEAVARCTGGLICAAQRKEALKHFVSRKAMDIDGVGEKLIEQLMEKELIHTPADLF
KLDHATLVRLERMGEKSANNALESIDKSKNTTLARFLFALGIRDVGETTAQNLANHFGTL
EAIRQADIEQLKNVQDVGEVVANRLFQFWQEPHNVEVVEDLIAQGVHWQDVVKQEIADNP
LKDKTVVLTGTLTELTRDQAKAMLQQLGCKVVGSVSSKTDYLIAGEKAGSKLTKAQELGI
KILTEQDFIQLAGL
NT seq
2025 nt
NT seq
+upstream
nt +downstream
nt
atgccaaagttagacaacgttaaacaaaaactagaagaaataaaaacgttattaagaaaa
tatgaataccattatcacgtattagataatccattagtgaccgactcagaatacgatcgg
gtcatgaatgaattaaaaaatattgaatggcaacatcctgaattaattaccaatgattcg
ccgactcaacgagtgggtgcaaaacctttagatggctttgcacaaatcaagcacgaaatc
ccaatgctttctttggataatgcattctctaatgaggaattggatggatttttacgccgt
attgaagatcgtgtgatcattgatagttcaaccattgaattttgctgtgagcctaagctt
gatgggttagctgtgagtattctttatgtaaatggcgttttaacgcaagcagccactcgc
ggtgatggcagtacaggggaagatattaccgccaatattcgtaccatccgaaatattccg
cttaaattacatagcgataatccgcccgctcgtttagaagtgcgtggcgaagtatttatg
ccacaacaaggctttgacgcattaaatgaaaaagccttagcgaaaggtgaaaaaaccttt
gctaatccgagaaatgcggcagcaggatcgttacgtcaattggatccgaaaatcactcgt
cagcgtccgttaatgttaaatgcgtatggaattggtatttatgaaagtgatgatgaatta
ccgcatactcattttgatcgcttgcaatggttaaaaacactcggtattccggtcaataat
gaaattattttagctaaggggcgagatgaattattagctttttatcagagtatccaagaa
aaacgtagctcgcttggttacgatattgatggtacagtattaaaagtaaacgatatcgat
ctacaagaaagattaggctttatttctaaagcaccacgttgggcgattgcctataaattc
cccgctcaagaagaaatgacaattttaaatagcgttgaatttcaagtgggaagaacggga
gcaatcacaccagtcgctaaattagaacctgtttttgtggcaggtgtgacagtaagtaat
gcaaccttacataatggcgatgaaattgagcgcttgggtgttgtgctaggcgataccgtt
attattcgccgtgcgggtgatgttatccctcaaattactggtgttgtattggagcgacgt
ccaaaaaatgcagaaaaaatcaaatttccaaccgcttgtcctgtgtgtggttctgcggtg
gtacgagttgatggtgaagctgttgctcgttgtacaggtggcttaatttgtgcagcacaa
cgtaaagaagcgttaaaacattttgtttcacgcaaagcaatggatattgatggggtaggt
gaaaaattaattgaacaattaatggaaaaagagttgattcatacgcctgcggatttattc
aaattagatcacgcaaccttagttcgattagaacgtatgggtgagaaatcagcgaataat
gcattagagagtatcgataaatcaaaaaataccacgctagcacgttttctttttgccttg
gggatccgtgatgtcggggaaaccacagcacaaaatttagcaaatcattttggtacatta
gaagcgattcgccaagcagatattgagcaattaaaaaatgtgcaagatgtgggggaggtg
gttgctaatcgtcttttccaattctggcaagaacctcacaatgtggaagtggtggaagat
ttaattgcgcaaggcgtacattggcaagatgtggttaaacaagaaattgccgataatcca
ttaaaagataaaacagtcgtactaacgggaacattgaccgaacttacgcgagatcaagca
aaagcaatgttgcaacagcttggatgcaaagtcgtaggcagtgtatcaagcaaaaccgat
taccttattgcaggcgaaaaagcgggatcaaaactgactaaagcgcaagaattaggtatc
aaaattttaactgaacaagattttattcaactagcggggttataa
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